Wall clock time and date at job start Mon Mar 30 2020 01:01:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 N 1.31843 * 119.54149 * 2 1 4 4 C 1.31717 * 121.93167 * 179.97438 * 3 2 1 5 5 C 1.39373 * 120.76153 * 359.97367 * 4 3 2 6 6 C 1.48406 * 120.50187 * 180.02562 * 5 4 3 7 7 C 1.39805 * 119.96895 * 180.20954 * 6 5 4 8 8 C 1.38229 * 120.42406 * 180.25800 * 7 6 5 9 9 C 1.38067 * 120.34750 * 359.78996 * 8 7 6 10 10 F 1.35104 * 120.04083 * 179.97438 * 9 8 7 11 11 C 1.41035 * 119.91561 * 359.97438 * 9 8 7 12 12 C 1.41324 * 120.20729 * 179.97438 * 11 9 8 13 13 H 1.08003 * 119.99581 * 334.67692 * 12 11 9 14 14 C 1.39913 * 120.00180 * 154.67583 * 12 11 9 15 15 N 1.30857 * 119.99699 * 342.93251 * 14 12 11 16 16 Si 1.86798 * 120.00194 * 162.93610 * 14 12 11 17 17 H 1.48499 * 109.46919 * 60.00161 * 16 14 12 18 18 H 1.48499 * 109.47049 * 179.97438 * 16 14 12 19 19 H 1.48495 * 109.46986 * 299.99875 * 16 14 12 20 20 C 1.38667 * 119.95885 * 0.02562 * 6 5 4 21 21 C 1.39599 * 119.00233 * 0.30039 * 5 4 3 22 22 C 1.38967 * 119.53759 * 179.97438 * 2 1 3 23 23 N 1.39722 * 120.43691 * 0.04042 * 22 2 1 24 24 H 1.09000 * 109.47479 * 90.00110 * 1 2 3 25 25 H 1.09001 * 109.47571 * 209.99925 * 1 2 3 26 26 H 1.09004 * 109.47127 * 329.99896 * 1 2 3 27 27 H 1.08008 * 119.61550 * 179.97438 * 4 3 2 28 28 H 1.08004 * 119.78743 * 0.04781 * 7 6 5 29 29 H 1.08004 * 119.82654 * 179.76843 * 8 7 6 30 30 H 0.96998 * 120.00101 * 179.97438 * 15 14 12 31 31 H 1.07998 * 120.17484 * 0.02562 * 20 6 5 32 32 H 1.07998 * 120.87423 * 179.70211 * 21 5 4 33 33 H 0.97005 * 119.99793 * 0.02562 * 23 22 2 34 34 H 0.96999 * 120.00280 * 180.02562 * 23 22 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.1570 1.1470 0.0000 4 6 3.4730 1.2020 0.0005 5 6 4.2352 0.0351 0.0016 6 6 5.7177 0.1037 0.0027 7 6 6.4713 -1.0738 -0.0006 8 6 7.8526 -1.0209 0.0058 9 6 8.5040 0.1964 0.0112 10 9 9.8543 0.2409 0.0179 11 6 7.7581 1.3933 0.0096 12 6 8.4185 2.6428 0.0156 13 1 9.4162 2.7242 0.4212 14 6 7.7800 3.7741 -0.5038 15 7 6.7387 3.6371 -1.2843 16 14 8.4140 5.4802 -0.0831 17 1 9.8177 5.6152 -0.5484 18 1 7.5701 6.5012 -0.7544 19 1 8.3584 5.6802 1.3872 20 6 6.3539 1.3358 0.0032 21 6 3.5832 -1.1992 -0.0042 22 6 2.1921 -1.2091 0.0005 23 7 1.4929 -2.4188 0.0002 24 1 -0.3634 0.0000 -1.0276 25 1 -0.3634 -0.8900 0.5138 26 1 -0.3633 0.8900 0.5139 27 1 3.9672 2.1624 0.0001 28 1 5.9710 -2.0310 -0.0048 29 1 8.4252 -1.9366 0.0069 30 1 6.2957 4.4215 -1.6441 31 1 5.7733 2.2465 0.0032 32 1 4.1439 -2.1222 -0.0084 33 1 0.5229 -2.4183 -0.0007 34 1 1.9775 -3.2591 0.0010 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001242411370.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:01:38 Heat of formation + Delta-G solvation = -21.743911 kcal Electronic energy + Delta-G solvation = -19721.176697 eV Core-core repulsion = 16531.496783 eV Total energy + Delta-G solvation = -3189.679914 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 272.102 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -49.22142 -41.29490 -39.18608 -36.16748 -35.80015 -34.24800 -31.79972 -31.07137 -30.43069 -27.46570 -27.33040 -24.39547 -23.57512 -22.72685 -21.53324 -19.36713 -18.36735 -18.12997 -17.63611 -17.05568 -16.73594 -16.31772 -15.99658 -15.85823 -15.51749 -15.31406 -14.57439 -14.48866 -14.14648 -13.69275 -13.57118 -13.33971 -13.26034 -12.99812 -12.91368 -12.71112 -12.62475 -12.19585 -12.13432 -11.97246 -11.40596 -11.17114 -10.57578 -10.35538 -9.54493 -8.97825 -8.70776 -8.37228 -6.44455 -0.14838 0.54450 0.88490 1.11456 1.36928 1.48422 1.52375 2.18057 2.58746 2.91156 3.02468 3.55341 3.56552 3.82747 3.88204 4.01136 4.20953 4.28363 4.49741 4.59287 4.63206 4.75351 4.82563 4.93140 5.02345 5.13344 5.20737 5.23354 5.43672 5.51687 5.67255 5.79470 5.96864 6.01212 6.14314 6.45583 6.51416 6.75189 6.83041 6.99255 7.21153 8.24010 Molecular weight = 272.10amu Principal moments of inertia in cm(-1) A = 0.019351 B = 0.005637 C = 0.004425 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1446.611180 B = 4966.377983 C = 6325.524148 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.089 4.089 2 C 0.025 3.975 3 N -0.466 5.466 4 C 0.028 3.972 5 C -0.040 4.040 6 C -0.052 4.052 7 C -0.192 4.192 8 C -0.119 4.119 9 C -0.058 4.058 10 F -0.169 7.169 11 C 0.054 3.946 12 C -0.494 4.494 13 H 0.072 0.928 14 C 0.040 3.960 15 N -0.814 5.814 16 Si 0.982 3.018 17 H -0.262 1.262 18 H -0.262 1.262 19 H -0.259 1.259 20 C -0.141 4.141 21 C -0.160 4.160 22 C 0.179 3.821 23 N -0.851 5.851 24 H 0.082 0.918 25 H 0.094 0.906 26 H 0.071 0.929 27 H 0.136 0.864 28 H 0.141 0.859 29 H 0.135 0.865 30 H 0.293 0.707 31 H 0.122 0.878 32 H 0.153 0.847 33 H 0.411 0.589 34 H 0.410 0.590 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.834 -8.683 1.747 14.781 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.119 4.119 3 N -0.174 5.174 4 C -0.131 4.131 5 C -0.043 4.043 6 C -0.053 4.053 7 C -0.211 4.211 8 C -0.138 4.138 9 C -0.078 4.078 10 F -0.149 7.149 11 C 0.051 3.949 12 C -0.522 4.522 13 H 0.090 0.910 14 C -0.176 4.176 15 N -0.439 5.439 16 Si 0.802 3.198 17 H -0.186 1.186 18 H -0.186 1.186 19 H -0.183 1.183 20 C -0.161 4.161 21 C -0.190 4.190 22 C 0.070 3.930 23 N -0.394 5.394 24 H 0.101 0.899 25 H 0.112 0.888 26 H 0.090 0.910 27 H 0.153 0.847 28 H 0.158 0.842 29 H 0.153 0.847 30 H 0.104 0.896 31 H 0.139 0.861 32 H 0.171 0.829 33 H 0.244 0.756 34 H 0.240 0.760 Dipole moment (debyes) X Y Z Total from point charges -12.444 -7.757 1.587 14.749 hybrid contribution 1.419 -0.012 -0.026 1.419 sum -11.025 -7.769 1.562 13.577 Atomic orbital electron populations 1.20596 0.86602 1.03942 1.03475 1.21439 0.98364 0.86843 1.05236 1.67256 1.09698 1.29664 1.10816 1.22446 0.89066 0.98087 1.03505 1.19651 0.92847 0.94196 0.97616 1.18685 0.91017 0.93854 1.01747 1.20632 0.92045 0.97230 1.11157 1.20769 0.95375 0.95294 1.02358 1.18307 0.75988 0.95431 1.18098 1.91239 1.30767 1.97505 1.95361 1.17903 0.92965 0.92180 0.91827 1.19647 1.02530 0.93236 1.36812 0.90985 1.26694 0.94167 1.05089 0.91651 1.69824 1.18047 1.34438 1.21583 0.85243 0.79292 0.75387 0.79837 1.18610 1.18573 1.18331 1.21310 0.93235 0.96712 1.04802 1.21243 0.92637 0.98053 1.07095 1.18431 0.91264 0.88674 0.94614 1.42318 1.09520 1.03675 1.83892 0.89930 0.88794 0.90994 0.84674 0.84158 0.84700 0.89596 0.86083 0.82901 0.75650 0.75991 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -1.70 9.73 71.23 0.69 -1.01 16 2 C 0.03 0.74 6.80 42.73 0.29 1.03 16 3 N -0.47 -17.30 10.25 -182.51 -1.87 -19.17 16 4 C 0.03 1.14 10.59 84.98 0.90 2.04 16 5 C -0.04 -1.60 5.89 -19.97 -0.12 -1.72 16 6 C -0.05 -2.34 5.87 -20.09 -0.12 -2.46 16 7 C -0.19 -7.79 9.44 22.65 0.21 -7.58 16 8 C -0.12 -5.18 9.99 22.23 0.22 -4.96 16 9 C -0.06 -3.01 7.31 22.92 0.17 -2.84 16 10 F -0.17 -8.78 16.71 44.97 0.75 -8.03 16 11 C 0.05 2.99 5.57 -21.27 -0.12 2.88 16 12 C -0.49 -27.45 8.77 23.44 0.21 -27.25 16 13 H 0.07 4.00 7.74 -2.91 -0.02 3.98 16 14 C 0.04 2.05 5.15 85.24 0.44 2.49 16 15 N -0.81 -42.28 10.97 21.82 0.24 -42.04 16 16 Si 0.98 38.81 29.59 68.60 2.03 40.84 16 17 H -0.26 -10.15 7.11 99.48 0.71 -9.45 16 18 H -0.26 -9.62 7.11 99.48 0.71 -8.92 16 19 H -0.26 -10.03 7.11 99.48 0.71 -9.33 16 20 C -0.14 -7.33 8.07 22.93 0.18 -7.15 16 21 C -0.16 -4.97 9.40 22.81 0.21 -4.76 16 22 C 0.18 4.66 6.75 38.27 0.26 4.92 16 23 N -0.85 -13.02 8.99 -51.18 -0.46 -13.48 16 24 H 0.08 1.39 8.14 -2.39 -0.02 1.37 16 25 H 0.09 1.16 6.53 -2.39 -0.02 1.15 16 26 H 0.07 1.45 8.14 -2.39 -0.02 1.43 16 27 H 0.14 6.05 6.21 -2.91 -0.02 6.03 16 28 H 0.14 4.50 6.24 -2.91 -0.02 4.48 16 29 H 0.14 4.90 8.06 -2.91 -0.02 4.88 16 30 H 0.29 13.79 8.30 -92.71 -0.77 13.02 16 31 H 0.12 6.48 4.34 -2.91 -0.01 6.47 16 32 H 0.15 3.95 6.30 -2.91 -0.02 3.93 16 33 H 0.41 4.22 6.83 -92.70 -0.63 3.59 16 34 H 0.41 4.65 8.85 -92.71 -0.82 3.83 16 Total: -1.00 -65.65 292.83 3.86 -61.79 By element: Atomic # 1 Polarization: 26.73 SS G_CDS: -0.27 Total: 26.46 kcal Atomic # 6 Polarization: -49.80 SS G_CDS: 3.44 Total: -46.37 kcal Atomic # 7 Polarization: -72.60 SS G_CDS: -2.09 Total: -74.69 kcal Atomic # 9 Polarization: -8.78 SS G_CDS: 0.75 Total: -8.03 kcal Atomic # 14 Polarization: 38.81 SS G_CDS: 2.03 Total: 40.84 kcal Total: -65.65 3.86 -61.79 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001242411370.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.048 kcal (2) G-P(sol) polarization free energy of solvation -65.647 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.599 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.855 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.792 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.744 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds