Wall clock time and date at job start Mon Mar 30 2020 01:01:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 N 1.31885 * 119.50476 * 2 1 4 4 C 1.31653 * 121.96018 * 179.72147 * 3 2 1 5 5 C 1.39706 * 120.71542 * 0.59184 * 4 3 2 6 6 C 1.47880 * 120.52973 * 179.70086 * 5 4 3 7 7 C 1.39126 * 120.24591 * 129.72450 * 6 5 4 8 8 C 1.38030 * 120.13288 * 180.25672 * 7 6 5 9 9 C 1.39178 * 120.64456 * 359.43956 * 8 7 6 10 10 F 1.35103 * 119.74973 * 180.26057 * 9 8 7 11 11 C 1.37651 * 120.49887 * 0.56363 * 9 8 7 12 12 C 1.40711 * 119.84592 * 359.71760 * 11 9 8 13 13 C 1.40883 * 120.31566 * 179.97438 * 12 11 9 14 14 H 1.08004 * 120.00302 * 153.02124 * 13 12 11 15 15 C 1.40060 * 120.00156 * 333.01791 * 13 12 11 16 16 N 1.30776 * 120.00122 * 344.48399 * 15 13 12 17 17 Si 1.86799 * 120.00064 * 164.47696 * 15 13 12 18 18 H 1.48507 * 109.47003 * 60.00351 * 17 15 13 19 19 H 1.48501 * 109.47291 * 180.02562 * 17 15 13 20 20 H 1.48500 * 109.47458 * 300.00710 * 17 15 13 21 21 C 1.39908 * 118.94250 * 359.42480 * 5 4 3 22 22 C 1.39011 * 118.22546 * 0.28190 * 21 5 4 23 23 N 1.39728 * 120.41540 * 180.02562 * 22 21 5 24 24 H 1.08992 * 109.47021 * 269.97485 * 1 2 3 25 25 H 1.09004 * 109.47076 * 29.98031 * 1 2 3 26 26 H 1.09001 * 109.47030 * 149.97638 * 1 2 3 27 27 H 1.08000 * 119.64697 * 180.29263 * 4 3 2 28 28 H 1.07997 * 119.93548 * 359.97377 * 7 6 5 29 29 H 1.07993 * 119.67684 * 179.70504 * 8 7 6 30 30 H 1.08003 * 120.07410 * 179.74449 * 11 9 8 31 31 H 0.96996 * 120.00014 * 179.97438 * 16 15 13 32 32 H 1.07996 * 120.89057 * 180.29384 * 21 5 4 33 33 H 0.96997 * 120.00154 * 359.97438 * 23 22 21 34 34 H 0.97000 * 119.99276 * 179.97438 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.1566 1.1478 0.0000 4 6 3.4719 1.2042 0.0054 5 6 4.2363 0.0349 -0.0009 6 6 5.7135 0.1031 -0.0015 7 6 6.4495 -0.6366 0.9188 8 6 7.8281 -0.5671 0.9196 9 6 8.4988 0.2307 -0.0027 10 9 9.8488 0.2812 0.0110 11 6 7.7968 0.9735 -0.9248 12 6 6.3907 0.9227 -0.9406 13 6 5.6623 1.6793 -1.8797 14 1 4.6850 1.3483 -2.1986 15 6 6.2055 2.8609 -2.3997 16 7 7.2280 3.4250 -1.8111 17 14 5.4696 3.6310 -3.9343 18 1 4.0458 3.9707 -3.6835 19 1 6.2204 4.8653 -4.2775 20 1 5.5576 2.6688 -5.0620 21 6 3.5820 -1.2018 -0.0009 22 6 2.1919 -1.2101 -0.0006 23 7 1.4917 -2.4192 0.0000 24 1 -0.3633 -0.0005 1.0276 25 1 -0.3633 0.8902 -0.5135 26 1 -0.3633 -0.8898 -0.5142 27 1 3.9654 2.1649 0.0100 28 1 5.9411 -1.2629 1.6368 29 1 8.3919 -1.1407 1.6403 30 1 8.3241 1.5934 -1.6348 31 1 7.6045 4.2431 -2.1715 32 1 4.1418 -2.1253 -0.0010 33 1 1.9755 -3.2599 -0.0002 34 1 0.5217 -2.4179 0.0006 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001242412211.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:01:42 Heat of formation + Delta-G solvation = -7.607753 kcal Electronic energy + Delta-G solvation = -19984.834496 eV Core-core repulsion = 16795.767571 eV Total energy + Delta-G solvation = -3189.066924 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 272.102 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -47.72218 -39.70237 -37.47684 -34.73155 -33.88852 -32.72458 -30.00426 -29.70431 -28.70575 -26.30069 -25.37983 -22.53636 -21.90337 -21.20232 -19.89481 -17.70617 -17.13389 -16.38491 -15.92383 -15.31562 -14.99817 -14.74890 -14.48786 -14.37374 -14.05829 -14.01142 -13.03999 -12.73757 -12.47696 -12.35902 -11.98190 -11.87531 -11.71348 -11.61843 -11.29548 -11.18401 -10.80894 -10.74159 -10.50228 -10.16585 -9.77275 -9.34921 -8.84984 -8.63857 -7.70186 -7.39020 -7.08132 -6.88538 -4.59009 1.70635 2.12347 2.60403 2.76798 3.00490 3.04084 3.10664 3.81703 4.08214 4.37348 4.54943 5.00031 5.23651 5.36134 5.52163 5.58473 5.80505 5.82880 5.88910 5.96132 6.08804 6.24857 6.36436 6.43047 6.54638 6.80204 6.84737 7.00557 7.09243 7.28122 7.36538 7.55505 7.64315 7.71906 7.80348 7.92787 8.04368 8.37195 8.61762 8.65949 8.81999 9.95730 Molecular weight = 272.10amu Principal moments of inertia in cm(-1) A = 0.014304 B = 0.007494 C = 0.005212 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1956.982498 B = 3735.644985 C = 5370.543655 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.086 4.086 2 C 0.018 3.982 3 N -0.453 5.453 4 C 0.068 3.932 5 C 0.015 3.985 6 C -0.192 4.192 7 C -0.042 4.042 8 C -0.279 4.279 9 C 0.110 3.890 10 F -0.167 7.167 11 C -0.195 4.195 12 C 0.149 3.851 13 C -0.441 4.441 14 H 0.087 0.913 15 C 0.077 3.923 16 N -0.778 5.778 17 Si 0.909 3.091 18 H -0.259 1.259 19 H -0.276 1.276 20 H -0.262 1.262 21 C -0.167 4.167 22 C 0.162 3.838 23 N -0.879 5.879 24 H 0.063 0.937 25 H 0.071 0.929 26 H 0.057 0.943 27 H 0.160 0.840 28 H 0.100 0.900 29 H 0.101 0.899 30 H 0.131 0.869 31 H 0.287 0.713 32 H 0.124 0.876 33 H 0.394 0.606 34 H 0.394 0.606 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.871 -6.118 1.147 10.034 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.123 4.123 3 N -0.161 5.161 4 C -0.093 4.093 5 C 0.013 3.987 6 C -0.194 4.194 7 C -0.060 4.060 8 C -0.299 4.299 9 C 0.091 3.909 10 F -0.146 7.146 11 C -0.215 4.215 12 C 0.146 3.854 13 C -0.469 4.469 14 H 0.105 0.895 15 C -0.144 4.144 16 N -0.402 5.402 17 Si 0.732 3.268 18 H -0.184 1.184 19 H -0.201 1.201 20 H -0.186 1.186 21 C -0.197 4.197 22 C 0.057 3.943 23 N -0.421 5.421 24 H 0.082 0.918 25 H 0.090 0.910 26 H 0.076 0.924 27 H 0.177 0.823 28 H 0.118 0.882 29 H 0.119 0.881 30 H 0.148 0.852 31 H 0.098 0.902 32 H 0.142 0.858 33 H 0.221 0.779 34 H 0.223 0.777 Dipole moment (debyes) X Y Z Total from point charges -8.142 -5.062 1.133 9.654 hybrid contribution 0.475 -0.748 -0.639 1.092 sum -7.668 -5.810 0.495 9.633 Atomic orbital electron populations 1.20400 0.90327 1.02059 1.01629 1.20553 0.95954 0.87301 1.08522 1.67236 1.10733 1.27669 1.10428 1.22829 0.87660 0.98873 0.99943 1.19507 0.93903 0.92194 0.93143 1.18486 0.89577 1.09151 1.02177 1.20364 0.92519 0.96482 0.96677 1.20184 0.94499 1.09691 1.05485 1.17779 0.75277 0.99433 0.98446 1.91341 1.31228 1.95671 1.96313 1.21238 0.94698 1.03695 1.01841 1.17232 0.90497 0.88394 0.89271 1.19591 1.03483 1.04474 1.19323 0.89457 1.26008 0.94065 0.96878 0.97448 1.69764 1.18981 1.16005 1.35418 0.86318 0.80419 0.78643 0.81375 1.18363 1.20080 1.18623 1.21138 0.91446 0.98435 1.08707 1.18426 0.91784 0.87167 0.96925 1.42363 1.08494 1.04792 1.86469 0.91845 0.91048 0.92381 0.82317 0.88228 0.88056 0.85175 0.90180 0.85850 0.77858 0.77690 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -1.11 9.73 36.01 0.35 -0.76 16 2 C 0.02 0.31 6.80 -82.27 -0.56 -0.25 16 3 N -0.45 -9.05 10.25 -8.94 -0.09 -9.14 16 4 C 0.07 1.44 9.20 -17.08 -0.16 1.28 16 5 C 0.02 0.32 4.92 -104.78 -0.52 -0.20 16 6 C -0.19 -4.35 5.54 -104.24 -0.58 -4.93 16 7 C -0.04 -0.89 9.52 -39.33 -0.37 -1.27 16 8 C -0.28 -6.11 10.01 -39.31 -0.39 -6.50 16 9 C 0.11 2.62 7.28 -39.45 -0.29 2.33 16 10 F -0.17 -3.85 17.26 2.25 0.04 -3.81 16 11 C -0.19 -4.91 8.63 -38.86 -0.34 -5.24 16 12 C 0.15 3.71 5.55 -106.58 -0.59 3.12 16 13 C -0.44 -10.82 7.13 -37.90 -0.27 -11.09 16 14 H 0.09 2.14 6.65 -52.48 -0.35 1.79 16 15 C 0.08 1.81 5.17 -17.32 -0.09 1.72 16 16 N -0.78 -18.98 10.98 55.55 0.61 -18.37 16 17 Si 0.91 18.03 29.59 -169.99 -5.03 13.00 16 18 H -0.26 -5.18 7.11 56.52 0.40 -4.78 16 19 H -0.28 -5.32 7.11 56.52 0.40 -4.91 16 20 H -0.26 -5.19 7.11 56.52 0.40 -4.79 16 21 C -0.17 -3.02 9.55 -38.67 -0.37 -3.39 16 22 C 0.16 2.60 6.75 -83.67 -0.56 2.04 16 23 N -0.88 -10.05 8.99 32.47 0.29 -9.75 16 24 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 25 H 0.07 0.92 8.14 -51.93 -0.42 0.50 16 26 H 0.06 0.59 6.53 -51.93 -0.34 0.25 16 27 H 0.16 3.55 7.33 -52.49 -0.38 3.17 16 28 H 0.10 1.85 8.05 -52.49 -0.42 1.43 16 29 H 0.10 1.99 8.06 -52.49 -0.42 1.57 16 30 H 0.13 3.40 6.26 -52.48 -0.33 3.07 16 31 H 0.29 6.40 8.29 -40.82 -0.34 6.06 16 32 H 0.12 2.03 8.06 -52.49 -0.42 1.61 16 33 H 0.39 3.79 8.85 -40.82 -0.36 3.42 16 34 H 0.39 3.63 6.82 -40.82 -0.28 3.35 16 LS Contribution 295.35 15.07 4.45 4.45 Total: -1.00 -26.95 295.35 -7.75 -34.70 By element: Atomic # 1 Polarization: 15.34 SS G_CDS: -3.29 Total: 12.05 kcal Atomic # 6 Polarization: -18.39 SS G_CDS: -4.74 Total: -23.13 kcal Atomic # 7 Polarization: -38.07 SS G_CDS: 0.81 Total: -37.26 kcal Atomic # 9 Polarization: -3.85 SS G_CDS: 0.04 Total: -3.81 kcal Atomic # 14 Polarization: 18.03 SS G_CDS: -5.03 Total: 13.00 kcal Total LS contribution 4.45 Total: 4.45 kcal Total: -26.95 -7.75 -34.70 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001242412211.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.092 kcal (2) G-P(sol) polarization free energy of solvation -26.946 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.146 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.753 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.699 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.608 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds