Wall clock time and date at job start Mon Mar 30 2020 01:01:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 N 1.31885 * 119.50476 * 2 1 4 4 C 1.31653 * 121.96018 * 179.72147 * 3 2 1 5 5 C 1.39706 * 120.71542 * 0.59184 * 4 3 2 6 6 C 1.47880 * 120.52973 * 179.70086 * 5 4 3 7 7 C 1.39126 * 120.24591 * 129.72450 * 6 5 4 8 8 C 1.38030 * 120.13288 * 180.25672 * 7 6 5 9 9 C 1.39178 * 120.64456 * 359.43956 * 8 7 6 10 10 F 1.35103 * 119.74973 * 180.26057 * 9 8 7 11 11 C 1.37651 * 120.49887 * 0.56363 * 9 8 7 12 12 C 1.40711 * 119.84592 * 359.71760 * 11 9 8 13 13 C 1.40883 * 120.31566 * 179.97438 * 12 11 9 14 14 H 1.08004 * 120.00302 * 153.02124 * 13 12 11 15 15 C 1.40060 * 120.00156 * 333.01791 * 13 12 11 16 16 N 1.30776 * 120.00122 * 344.48399 * 15 13 12 17 17 Si 1.86799 * 120.00064 * 164.47696 * 15 13 12 18 18 H 1.48507 * 109.47003 * 60.00351 * 17 15 13 19 19 H 1.48501 * 109.47291 * 180.02562 * 17 15 13 20 20 H 1.48500 * 109.47458 * 300.00710 * 17 15 13 21 21 C 1.39908 * 118.94250 * 359.42480 * 5 4 3 22 22 C 1.39011 * 118.22546 * 0.28190 * 21 5 4 23 23 N 1.39728 * 120.41540 * 180.02562 * 22 21 5 24 24 H 1.08992 * 109.47021 * 269.97485 * 1 2 3 25 25 H 1.09004 * 109.47076 * 29.98031 * 1 2 3 26 26 H 1.09001 * 109.47030 * 149.97638 * 1 2 3 27 27 H 1.08000 * 119.64697 * 180.29263 * 4 3 2 28 28 H 1.07997 * 119.93548 * 359.97377 * 7 6 5 29 29 H 1.07993 * 119.67684 * 179.70504 * 8 7 6 30 30 H 1.08003 * 120.07410 * 179.74449 * 11 9 8 31 31 H 0.96996 * 120.00014 * 179.97438 * 16 15 13 32 32 H 1.07996 * 120.89057 * 180.29384 * 21 5 4 33 33 H 0.96997 * 120.00154 * 359.97438 * 23 22 21 34 34 H 0.97000 * 119.99276 * 179.97438 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.1566 1.1478 0.0000 4 6 3.4719 1.2042 0.0054 5 6 4.2363 0.0349 -0.0009 6 6 5.7135 0.1031 -0.0015 7 6 6.4495 -0.6366 0.9188 8 6 7.8281 -0.5671 0.9196 9 6 8.4988 0.2307 -0.0027 10 9 9.8488 0.2812 0.0110 11 6 7.7968 0.9735 -0.9248 12 6 6.3907 0.9227 -0.9406 13 6 5.6623 1.6793 -1.8797 14 1 4.6850 1.3483 -2.1986 15 6 6.2055 2.8609 -2.3997 16 7 7.2280 3.4250 -1.8111 17 14 5.4696 3.6310 -3.9343 18 1 4.0458 3.9707 -3.6835 19 1 6.2204 4.8653 -4.2775 20 1 5.5576 2.6688 -5.0620 21 6 3.5820 -1.2018 -0.0009 22 6 2.1919 -1.2101 -0.0006 23 7 1.4917 -2.4192 0.0000 24 1 -0.3633 -0.0005 1.0276 25 1 -0.3633 0.8902 -0.5135 26 1 -0.3633 -0.8898 -0.5142 27 1 3.9654 2.1649 0.0100 28 1 5.9411 -1.2629 1.6368 29 1 8.3919 -1.1407 1.6403 30 1 8.3241 1.5934 -1.6348 31 1 7.6045 4.2431 -2.1715 32 1 4.1418 -2.1253 -0.0010 33 1 1.9755 -3.2599 -0.0002 34 1 0.5217 -2.4179 0.0006 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001242412211.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:01:42 Heat of formation + Delta-G solvation = -22.750856 kcal Electronic energy + Delta-G solvation = -19985.491150 eV Core-core repulsion = 16795.767571 eV Total energy + Delta-G solvation = -3189.723579 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 272.102 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -49.57792 -41.13747 -39.19273 -35.99399 -35.66649 -34.20140 -31.77991 -31.05811 -30.17338 -27.84554 -27.05715 -23.97097 -23.47312 -22.92209 -21.49714 -19.51659 -18.37318 -17.90237 -17.61653 -16.72584 -16.70373 -16.44882 -16.23946 -15.90284 -15.46610 -15.35003 -14.74605 -14.41431 -14.01913 -13.84311 -13.44283 -13.22935 -13.17255 -13.03688 -12.89020 -12.78993 -12.41558 -12.16660 -12.06994 -11.91435 -11.52956 -11.11767 -10.35504 -10.13226 -9.51903 -9.06463 -8.71552 -8.33619 -6.43478 0.17246 0.68647 0.86176 1.02235 1.36038 1.46165 1.48466 2.15830 2.59607 3.01228 3.06525 3.54823 3.71932 3.77564 3.97979 4.10636 4.39133 4.39888 4.53872 4.70409 4.77820 4.81726 4.86560 5.01577 5.02034 5.15664 5.25315 5.27188 5.58511 5.59169 5.73334 5.77785 5.95382 6.00176 6.23805 6.52183 6.56620 6.80097 6.83825 7.05568 7.36680 8.21419 Molecular weight = 272.10amu Principal moments of inertia in cm(-1) A = 0.014304 B = 0.007494 C = 0.005212 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1956.982498 B = 3735.644985 C = 5370.543655 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.086 4.086 2 C 0.014 3.986 3 N -0.471 5.471 4 C 0.043 3.957 5 C -0.006 4.006 6 C -0.190 4.190 7 C -0.041 4.041 8 C -0.274 4.274 9 C 0.096 3.904 10 F -0.166 7.166 11 C -0.221 4.221 12 C 0.124 3.876 13 C -0.460 4.460 14 H 0.080 0.920 15 C 0.041 3.959 16 N -0.812 5.812 17 Si 0.972 3.028 18 H -0.261 1.261 19 H -0.265 1.265 20 H -0.259 1.259 21 C -0.170 4.170 22 C 0.176 3.824 23 N -0.855 5.855 24 H 0.081 0.919 25 H 0.067 0.933 26 H 0.089 0.911 27 H 0.130 0.870 28 H 0.133 0.867 29 H 0.129 0.871 30 H 0.110 0.890 31 H 0.292 0.708 32 H 0.142 0.858 33 H 0.407 0.593 34 H 0.410 0.590 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.291 -8.315 1.526 13.318 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.130 4.130 3 N -0.179 5.179 4 C -0.116 4.116 5 C -0.009 4.009 6 C -0.192 4.192 7 C -0.059 4.059 8 C -0.293 4.293 9 C 0.077 3.923 10 F -0.145 7.145 11 C -0.241 4.241 12 C 0.121 3.879 13 C -0.488 4.488 14 H 0.098 0.902 15 C -0.177 4.177 16 N -0.436 5.436 17 Si 0.792 3.208 18 H -0.185 1.185 19 H -0.189 1.189 20 H -0.183 1.183 21 C -0.201 4.201 22 C 0.068 3.932 23 N -0.398 5.398 24 H 0.100 0.900 25 H 0.086 0.914 26 H 0.108 0.892 27 H 0.148 0.852 28 H 0.151 0.849 29 H 0.147 0.853 30 H 0.128 0.872 31 H 0.103 0.897 32 H 0.159 0.841 33 H 0.238 0.762 34 H 0.242 0.758 Dipole moment (debyes) X Y Z Total from point charges -10.564 -7.295 1.521 12.928 hybrid contribution 1.060 -0.224 -0.649 1.263 sum -9.504 -7.519 0.872 12.150 Atomic orbital electron populations 1.20541 0.86974 1.03531 1.03252 1.21342 0.98128 0.86883 1.06601 1.67213 1.10089 1.29535 1.11092 1.22405 0.88492 0.98062 1.02679 1.19404 0.92845 0.93331 0.95307 1.18800 0.91043 1.07980 1.01361 1.20708 0.92327 0.96314 0.96594 1.20514 0.95050 1.08812 1.04951 1.17986 0.75421 0.99971 0.98964 1.91330 1.31120 1.95730 1.96352 1.21162 0.95204 1.04978 1.02798 1.17537 0.90600 0.89490 0.90287 1.19627 1.03395 1.05342 1.20462 0.90237 1.26727 0.94287 0.96956 0.99718 1.69816 1.20312 1.16689 1.36797 0.85387 0.79418 0.78116 0.77848 1.18547 1.18876 1.18347 1.21260 0.92545 0.97826 1.08446 1.18404 0.91267 0.88536 0.94976 1.42290 1.09355 1.03713 1.84410 0.89993 0.91382 0.89207 0.85239 0.84876 0.85297 0.87165 0.89663 0.84063 0.76247 0.75847 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -1.86 9.73 71.24 0.69 -1.17 16 2 C 0.01 0.44 6.80 42.74 0.29 0.73 16 3 N -0.47 -18.70 10.25 -182.20 -1.87 -20.57 16 4 C 0.04 1.88 9.20 85.07 0.78 2.66 16 5 C -0.01 -0.26 4.92 -19.96 -0.10 -0.36 16 6 C -0.19 -8.73 5.54 -19.61 -0.11 -8.84 16 7 C -0.04 -1.71 9.52 22.43 0.21 -1.49 16 8 C -0.27 -11.72 10.01 22.45 0.22 -11.49 16 9 C 0.10 4.65 7.28 22.36 0.16 4.81 16 10 F -0.17 -7.81 17.26 44.97 0.78 -7.04 16 11 C -0.22 -11.67 8.63 22.74 0.20 -11.48 16 12 C 0.12 6.42 5.55 -21.13 -0.12 6.31 16 13 C -0.46 -23.73 7.13 23.36 0.17 -23.56 16 14 H 0.08 4.10 6.65 -2.91 -0.02 4.08 16 15 C 0.04 1.99 5.17 85.29 0.44 2.43 16 16 N -0.81 -41.63 10.98 21.85 0.24 -41.39 16 17 Si 0.97 38.13 29.59 68.60 2.03 40.16 16 18 H -0.26 -10.21 7.11 99.48 0.71 -9.51 16 19 H -0.26 -9.78 7.11 99.48 0.71 -9.07 16 20 H -0.26 -9.96 7.11 99.48 0.71 -9.26 16 21 C -0.17 -5.79 9.55 22.86 0.22 -5.57 16 22 C 0.18 5.08 6.75 38.26 0.26 5.34 16 23 N -0.85 -15.38 8.99 -51.19 -0.46 -15.84 16 24 H 0.08 1.53 8.14 -2.39 -0.02 1.51 16 25 H 0.07 1.56 8.14 -2.38 -0.02 1.54 16 26 H 0.09 1.37 6.53 -2.39 -0.02 1.35 16 27 H 0.13 6.27 7.33 -2.91 -0.02 6.24 16 28 H 0.13 4.55 8.05 -2.91 -0.02 4.53 16 29 H 0.13 4.75 8.06 -2.91 -0.02 4.73 16 30 H 0.11 6.14 6.26 -2.91 -0.02 6.12 16 31 H 0.29 13.64 8.29 -92.71 -0.77 12.87 16 32 H 0.14 4.20 8.06 -2.91 -0.02 4.18 16 33 H 0.41 5.77 8.85 -92.71 -0.82 4.95 16 34 H 0.41 5.26 6.82 -92.71 -0.63 4.63 16 Total: -1.00 -61.20 295.35 3.76 -57.44 By element: Atomic # 1 Polarization: 29.19 SS G_CDS: -0.29 Total: 28.90 kcal Atomic # 6 Polarization: -45.00 SS G_CDS: 3.32 Total: -41.67 kcal Atomic # 7 Polarization: -75.71 SS G_CDS: -2.09 Total: -77.79 kcal Atomic # 9 Polarization: -7.81 SS G_CDS: 0.78 Total: -7.04 kcal Atomic # 14 Polarization: 38.13 SS G_CDS: 2.03 Total: 40.16 kcal Total: -61.20 3.76 -57.44 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001242412211.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.689 kcal (2) G-P(sol) polarization free energy of solvation -61.196 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.507 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.756 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.440 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.751 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds