Wall clock time and date at job start Mon Mar 30 2020 01:09:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.50691 * 109.47051 * 2 1 4 4 N 1.31749 * 119.70328 * 85.80931 * 3 2 1 5 5 C 1.31885 * 121.85352 * 179.97438 * 4 3 2 6 6 C 1.38312 * 121.03059 * 359.97438 * 5 4 3 7 7 C 1.38411 * 119.28139 * 0.02562 * 6 5 4 8 8 C 1.39304 * 119.70357 * 265.52958 * 3 2 1 9 9 C 1.48385 * 120.53345 * 0.02562 * 8 3 2 10 10 C 1.39010 * 120.41908 * 112.48234 * 9 8 3 11 11 C 1.40956 * 118.12710 * 179.97438 * 10 9 8 12 12 C 1.41374 * 120.57352 * 179.97438 * 11 10 9 13 13 H 1.08001 * 119.99718 * 204.61234 * 12 11 10 14 14 C 1.39899 * 120.00209 * 24.60102 * 12 11 10 15 15 N 1.30865 * 119.99883 * 13.90365 * 14 12 11 16 16 Si 1.86799 * 120.00140 * 193.89870 * 14 12 11 17 17 H 1.48497 * 109.47051 * 60.00490 * 16 14 12 18 18 H 1.48498 * 109.46900 * 179.97438 * 16 14 12 19 19 H 1.48497 * 109.47111 * 300.00221 * 16 14 12 20 20 C 1.40802 * 118.85303 * 359.97438 * 11 10 9 21 21 N 1.31500 * 120.69864 * 359.97423 * 20 11 10 22 22 C 1.32164 * 122.07381 * 359.75236 * 21 20 11 23 23 F 1.35109 * 119.45712 * 180.26691 * 22 21 20 24 24 H 1.09000 * 109.47362 * 304.70707 * 1 2 3 25 25 H 1.09001 * 109.46982 * 64.70949 * 1 2 3 26 26 H 1.09006 * 109.47185 * 184.70542 * 1 2 3 27 27 H 1.08998 * 109.46706 * 239.99412 * 2 1 3 28 28 H 1.09006 * 109.46823 * 120.00165 * 2 1 3 29 29 H 1.08003 * 119.48291 * 179.97438 * 5 4 3 30 30 H 1.07997 * 120.35853 * 180.02562 * 6 5 4 31 31 H 1.08003 * 120.84071 * 180.02562 * 7 6 5 32 32 H 1.07997 * 120.93380 * 359.97438 * 10 9 8 33 33 H 0.96992 * 119.99869 * 180.02562 * 15 14 12 34 34 H 1.08003 * 119.65015 * 179.97438 * 20 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4207 0.0000 4 7 2.1711 2.0641 1.1413 5 6 2.6074 3.3077 1.1907 6 6 2.9405 3.9928 0.0363 7 6 2.8118 3.3596 -1.1877 8 6 2.3513 2.0401 -1.2063 9 6 2.1999 1.3123 -2.4906 10 6 1.2366 1.7049 -3.4127 11 6 1.1352 0.9797 -4.6171 12 6 0.1734 1.3339 -5.5909 13 1 -0.1804 0.5947 -6.2943 14 6 -0.3202 2.6419 -5.6433 15 7 0.2886 3.5977 -4.9887 16 14 -1.8482 3.0241 -6.6475 17 1 -2.9915 2.2297 -6.1310 18 1 -2.1626 4.4714 -6.5390 19 1 -1.6055 2.6750 -8.0703 20 6 2.0083 -0.1034 -4.8337 21 7 2.9041 -0.4347 -3.9299 22 6 3.0307 0.2259 -2.7922 23 9 3.9732 -0.1568 -1.9030 24 1 -0.3634 0.5851 0.8448 25 1 -0.3633 0.4390 -0.9292 26 1 -0.3634 -1.0243 0.0843 27 1 1.8933 -0.5139 -0.8899 28 1 1.8933 -0.5139 0.8900 29 1 2.7062 3.7988 2.1476 30 1 3.2972 5.0108 0.0894 31 1 3.0651 3.8707 -2.1049 32 1 0.5842 2.5418 -3.2118 33 1 -0.0538 4.5044 -5.0247 34 1 1.9415 -0.6682 -5.7519 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001242524270.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:09:49 Heat of formation + Delta-G solvation = 1.378019 kcal Electronic energy + Delta-G solvation = -20469.501771 eV Core-core repulsion = 17280.824499 eV Total energy + Delta-G solvation = -3188.677272 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 272.102 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -47.65131 -39.95135 -38.22415 -34.29677 -33.94316 -33.01749 -30.61277 -30.16580 -28.48177 -25.62111 -24.09374 -23.68701 -21.86962 -21.17917 -20.65767 -17.66165 -16.71261 -16.40398 -16.06561 -15.90055 -15.31875 -14.78389 -14.67316 -13.87539 -13.59070 -13.44401 -13.21857 -12.68747 -12.50762 -12.39323 -12.18901 -11.94274 -11.87397 -11.60981 -11.38447 -11.28808 -10.99935 -10.80161 -10.61518 -10.27454 -9.58102 -9.47505 -9.19747 -8.71951 -8.38405 -8.23088 -7.65106 -7.06088 -4.70998 1.40377 1.65562 2.25473 2.61126 2.90908 2.92401 2.98471 3.69168 4.12358 4.30279 4.61557 5.01076 5.08029 5.20345 5.27367 5.30659 5.49760 5.65913 5.72083 5.76790 5.89548 6.09286 6.17741 6.25359 6.35727 6.44572 6.53295 6.59475 6.61647 6.76706 6.84280 6.87301 7.08276 7.37925 7.56886 7.68040 8.13374 8.34445 8.40221 8.41869 9.14416 9.83749 Molecular weight = 272.10amu Principal moments of inertia in cm(-1) A = 0.017957 B = 0.006781 C = 0.005934 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1558.868934 B = 4127.995142 C = 4717.392614 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.075 4.075 3 C 0.145 3.855 4 N -0.487 5.487 5 C 0.087 3.913 6 C -0.182 4.182 7 C -0.058 4.058 8 C -0.063 4.063 9 C -0.097 4.097 10 C -0.094 4.094 11 C 0.055 3.945 12 C -0.437 4.437 13 H 0.088 0.912 14 C 0.072 3.928 15 N -0.788 5.788 16 Si 0.918 3.082 17 H -0.261 1.261 18 H -0.276 1.276 19 H -0.262 1.262 20 C 0.011 3.989 21 N -0.487 5.487 22 C 0.164 3.836 23 F -0.145 7.145 24 H 0.053 0.947 25 H 0.059 0.941 26 H 0.058 0.942 27 H 0.085 0.915 28 H 0.075 0.925 29 H 0.149 0.851 30 H 0.130 0.870 31 H 0.136 0.864 32 H 0.141 0.859 33 H 0.287 0.713 34 H 0.139 0.861 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.010 2.062 5.416 5.883 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.113 4.113 3 C 0.008 3.992 4 N -0.196 5.196 5 C -0.070 4.070 6 C -0.202 4.202 7 C -0.084 4.084 8 C -0.066 4.066 9 C -0.101 4.101 10 C -0.120 4.120 11 C 0.050 3.950 12 C -0.466 4.466 13 H 0.106 0.894 14 C -0.148 4.148 15 N -0.412 5.412 16 Si 0.741 3.259 17 H -0.185 1.185 18 H -0.201 1.201 19 H -0.186 1.186 20 C -0.150 4.150 21 N -0.199 5.199 22 C 0.011 3.989 23 F -0.125 7.125 24 H 0.072 0.928 25 H 0.078 0.922 26 H 0.077 0.923 27 H 0.104 0.896 28 H 0.094 0.906 29 H 0.167 0.833 30 H 0.148 0.852 31 H 0.154 0.846 32 H 0.159 0.841 33 H 0.098 0.902 34 H 0.157 0.843 Dipole moment (debyes) X Y Z Total from point charges -0.633 1.200 6.134 6.283 hybrid contribution -0.666 1.568 -0.980 1.965 sum -1.299 2.768 5.155 5.993 Atomic orbital electron populations 1.21654 0.94317 1.01635 1.02206 1.20501 0.96431 0.90804 1.03565 1.21309 0.94239 0.96356 0.87327 1.67397 1.13745 1.09365 1.29111 1.22601 0.95804 0.90560 0.98080 1.21982 1.03439 1.01295 0.93443 1.21730 0.94762 0.93500 0.98409 1.19595 0.99100 0.94229 0.93634 1.18951 0.99998 0.96804 0.94396 1.21763 0.97647 1.01399 0.91150 1.18486 0.92175 0.91914 0.92396 1.19554 1.18348 0.95575 1.13168 0.89392 1.26018 0.97672 0.95865 0.95212 1.69729 1.35544 1.02172 1.33758 0.86185 0.81000 0.78154 0.80536 1.18527 1.20092 1.18613 1.22328 0.94436 1.01074 0.97170 1.66297 1.22455 1.29664 1.01500 1.17477 0.94276 0.97475 0.89701 1.91416 1.63883 1.91499 1.65709 0.92755 0.92210 0.92315 0.89609 0.90632 0.83322 0.85182 0.84644 0.84145 0.90159 0.84348 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.26 9.89 37.16 0.37 -1.90 16 2 C -0.08 -1.34 5.86 -27.89 -0.16 -1.51 16 3 C 0.15 2.79 6.02 -82.24 -0.50 2.29 16 4 N -0.49 -8.74 10.26 -9.21 -0.09 -8.84 16 5 C 0.09 1.32 11.17 -17.50 -0.20 1.12 16 6 C -0.18 -2.73 10.10 -39.49 -0.40 -3.13 16 7 C -0.06 -1.05 9.92 -38.95 -0.39 -1.44 16 8 C -0.06 -1.28 4.99 -104.75 -0.52 -1.80 16 9 C -0.10 -2.19 4.51 -104.75 -0.47 -2.66 16 10 C -0.09 -2.23 8.53 -38.27 -0.33 -2.55 16 11 C 0.05 1.33 5.59 -106.71 -0.60 0.73 16 12 C -0.44 -10.21 9.09 -37.77 -0.34 -10.55 16 13 H 0.09 1.92 7.88 -52.49 -0.41 1.51 16 14 C 0.07 1.59 5.24 -17.34 -0.09 1.50 16 15 N -0.79 -18.07 10.77 55.54 0.60 -17.48 16 16 Si 0.92 16.73 29.58 -169.99 -5.03 11.70 16 17 H -0.26 -4.75 7.11 56.52 0.40 -4.35 16 18 H -0.28 -4.96 7.11 56.52 0.40 -4.56 16 19 H -0.26 -4.72 7.11 56.52 0.40 -4.32 16 20 C 0.01 0.27 10.96 -16.73 -0.18 0.08 16 21 N -0.49 -11.83 10.33 -12.58 -0.13 -11.96 16 22 C 0.16 3.90 6.93 -16.73 -0.12 3.78 16 23 F -0.15 -3.37 16.10 2.25 0.04 -3.33 16 24 H 0.05 0.83 8.14 -51.93 -0.42 0.41 16 25 H 0.06 1.05 8.14 -51.93 -0.42 0.63 16 26 H 0.06 0.82 8.14 -51.93 -0.42 0.40 16 27 H 0.09 1.69 5.04 -51.93 -0.26 1.43 16 28 H 0.08 1.24 8.14 -51.93 -0.42 0.82 16 29 H 0.15 1.71 8.06 -52.48 -0.42 1.29 16 30 H 0.13 1.51 8.06 -52.49 -0.42 1.08 16 31 H 0.14 2.39 8.06 -52.48 -0.42 1.97 16 32 H 0.14 3.41 6.12 -52.49 -0.32 3.09 16 33 H 0.29 6.02 8.30 -40.82 -0.34 5.68 16 34 H 0.14 2.91 8.06 -52.48 -0.42 2.49 16 LS Contribution 299.32 15.07 4.51 4.51 Total: -1.00 -26.29 299.32 -7.54 -33.84 By element: Atomic # 1 Polarization: 11.08 SS G_CDS: -3.51 Total: 7.56 kcal Atomic # 6 Polarization: -12.09 SS G_CDS: -3.92 Total: -16.02 kcal Atomic # 7 Polarization: -38.64 SS G_CDS: 0.37 Total: -38.27 kcal Atomic # 9 Polarization: -3.37 SS G_CDS: 0.04 Total: -3.33 kcal Atomic # 14 Polarization: 16.73 SS G_CDS: -5.03 Total: 11.70 kcal Total LS contribution 4.51 Total: 4.51 kcal Total: -26.29 -7.54 -33.84 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001242524270.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.217 kcal (2) G-P(sol) polarization free energy of solvation -26.295 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 8.923 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.545 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.839 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.378 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds