Wall clock time and date at job start Mon Mar 30 2020 01:09:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.50691 * 109.47051 * 2 1 4 4 N 1.31749 * 119.70328 * 85.80931 * 3 2 1 5 5 C 1.31885 * 121.85352 * 179.97438 * 4 3 2 6 6 C 1.38312 * 121.03059 * 359.97438 * 5 4 3 7 7 C 1.38411 * 119.28139 * 0.02562 * 6 5 4 8 8 C 1.39304 * 119.70357 * 265.52958 * 3 2 1 9 9 C 1.48385 * 120.53345 * 0.02562 * 8 3 2 10 10 C 1.39010 * 120.41908 * 112.48234 * 9 8 3 11 11 C 1.40956 * 118.12710 * 179.97438 * 10 9 8 12 12 C 1.41374 * 120.57352 * 179.97438 * 11 10 9 13 13 H 1.08001 * 119.99718 * 204.61234 * 12 11 10 14 14 C 1.39899 * 120.00209 * 24.60102 * 12 11 10 15 15 N 1.30865 * 119.99883 * 13.90365 * 14 12 11 16 16 Si 1.86799 * 120.00140 * 193.89870 * 14 12 11 17 17 H 1.48497 * 109.47051 * 60.00490 * 16 14 12 18 18 H 1.48498 * 109.46900 * 179.97438 * 16 14 12 19 19 H 1.48497 * 109.47111 * 300.00221 * 16 14 12 20 20 C 1.40802 * 118.85303 * 359.97438 * 11 10 9 21 21 N 1.31500 * 120.69864 * 359.97423 * 20 11 10 22 22 C 1.32164 * 122.07381 * 359.75236 * 21 20 11 23 23 F 1.35109 * 119.45712 * 180.26691 * 22 21 20 24 24 H 1.09000 * 109.47362 * 304.70707 * 1 2 3 25 25 H 1.09001 * 109.46982 * 64.70949 * 1 2 3 26 26 H 1.09006 * 109.47185 * 184.70542 * 1 2 3 27 27 H 1.08998 * 109.46706 * 239.99412 * 2 1 3 28 28 H 1.09006 * 109.46823 * 120.00165 * 2 1 3 29 29 H 1.08003 * 119.48291 * 179.97438 * 5 4 3 30 30 H 1.07997 * 120.35853 * 180.02562 * 6 5 4 31 31 H 1.08003 * 120.84071 * 180.02562 * 7 6 5 32 32 H 1.07997 * 120.93380 * 359.97438 * 10 9 8 33 33 H 0.96992 * 119.99869 * 180.02562 * 15 14 12 34 34 H 1.08003 * 119.65015 * 179.97438 * 20 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4207 0.0000 4 7 2.1711 2.0641 1.1413 5 6 2.6074 3.3077 1.1907 6 6 2.9405 3.9928 0.0363 7 6 2.8118 3.3596 -1.1877 8 6 2.3513 2.0401 -1.2063 9 6 2.1999 1.3123 -2.4906 10 6 1.2366 1.7049 -3.4127 11 6 1.1352 0.9797 -4.6171 12 6 0.1734 1.3339 -5.5909 13 1 -0.1804 0.5947 -6.2943 14 6 -0.3202 2.6419 -5.6433 15 7 0.2886 3.5977 -4.9887 16 14 -1.8482 3.0241 -6.6475 17 1 -2.9915 2.2297 -6.1310 18 1 -2.1626 4.4714 -6.5390 19 1 -1.6055 2.6750 -8.0703 20 6 2.0083 -0.1034 -4.8337 21 7 2.9041 -0.4347 -3.9299 22 6 3.0307 0.2259 -2.7922 23 9 3.9732 -0.1568 -1.9030 24 1 -0.3634 0.5851 0.8448 25 1 -0.3633 0.4390 -0.9292 26 1 -0.3634 -1.0243 0.0843 27 1 1.8933 -0.5139 -0.8899 28 1 1.8933 -0.5139 0.8900 29 1 2.7062 3.7988 2.1476 30 1 3.2972 5.0108 0.0894 31 1 3.0651 3.8707 -2.1049 32 1 0.5842 2.5418 -3.2118 33 1 -0.0538 4.5044 -5.0247 34 1 1.9415 -0.6682 -5.7519 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001242524270.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:09:49 Heat of formation + Delta-G solvation = -11.870755 kcal Electronic energy + Delta-G solvation = -20470.076281 eV Core-core repulsion = 17280.824499 eV Total energy + Delta-G solvation = -3189.251782 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 272.102 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -49.47570 -41.35582 -39.95841 -36.03649 -35.34311 -34.51672 -32.32460 -31.68334 -29.98224 -27.41276 -25.44679 -25.21524 -23.64364 -22.71937 -22.11874 -19.37956 -18.53208 -17.93122 -17.62737 -17.36993 -16.91009 -16.43734 -16.25347 -15.26107 -15.16653 -14.82954 -14.63767 -14.27253 -14.13373 -13.95853 -13.87602 -13.67396 -13.36594 -13.09369 -12.97188 -12.84320 -12.43692 -12.26278 -12.00926 -11.88764 -11.26163 -10.95488 -10.58983 -10.28121 -10.16967 -9.80433 -9.38015 -8.76879 -6.52365 0.00627 0.28361 0.54374 0.81881 1.41311 1.50223 1.53449 2.15982 2.55476 2.80014 3.23597 3.32754 3.44752 3.65465 3.84543 4.00513 4.22419 4.23914 4.31649 4.39334 4.44600 4.61443 4.64529 4.84733 4.91557 4.93546 5.00084 5.06421 5.13408 5.24278 5.24715 5.33760 5.58016 5.72245 5.77729 5.89741 6.34355 6.59674 6.63896 7.01035 7.30924 8.15131 Molecular weight = 272.10amu Principal moments of inertia in cm(-1) A = 0.017957 B = 0.006781 C = 0.005934 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1558.868934 B = 4127.995142 C = 4717.392614 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.075 4.075 3 C 0.134 3.866 4 N -0.500 5.500 5 C 0.093 3.907 6 C -0.167 4.167 7 C -0.072 4.072 8 C -0.099 4.099 9 C -0.080 4.080 10 C -0.111 4.111 11 C 0.036 3.964 12 C -0.457 4.457 13 H 0.098 0.902 14 C 0.036 3.964 15 N -0.809 5.809 16 Si 0.988 3.012 17 H -0.259 1.259 18 H -0.269 1.269 19 H -0.255 1.255 20 C -0.002 4.002 21 N -0.501 5.501 22 C 0.141 3.859 23 F -0.147 7.147 24 H 0.063 0.937 25 H 0.036 0.964 26 H 0.078 0.922 27 H 0.061 0.939 28 H 0.088 0.912 29 H 0.195 0.805 30 H 0.172 0.828 31 H 0.131 0.869 32 H 0.131 0.869 33 H 0.296 0.704 34 H 0.157 0.843 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.843 3.597 6.253 7.446 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C -0.113 4.113 3 C -0.003 4.003 4 N -0.209 5.209 5 C -0.064 4.064 6 C -0.186 4.186 7 C -0.098 4.098 8 C -0.101 4.101 9 C -0.084 4.084 10 C -0.136 4.136 11 C 0.032 3.968 12 C -0.485 4.485 13 H 0.116 0.884 14 C -0.182 4.182 15 N -0.433 5.433 16 Si 0.808 3.192 17 H -0.183 1.183 18 H -0.193 1.193 19 H -0.179 1.179 20 C -0.163 4.163 21 N -0.213 5.213 22 C -0.012 4.012 23 F -0.127 7.127 24 H 0.082 0.918 25 H 0.055 0.945 26 H 0.097 0.903 27 H 0.079 0.921 28 H 0.106 0.894 29 H 0.211 0.789 30 H 0.190 0.810 31 H 0.149 0.851 32 H 0.149 0.851 33 H 0.107 0.893 34 H 0.174 0.826 Dipole moment (debyes) X Y Z Total from point charges -1.446 2.723 6.981 7.632 hybrid contribution -0.366 1.190 -1.174 1.711 sum -1.812 3.913 5.807 7.233 Atomic orbital electron populations 1.21590 0.93167 1.02899 1.01302 1.20485 0.97430 0.90538 1.02874 1.21361 0.94688 0.96832 0.87389 1.67469 1.14439 1.10756 1.28209 1.23405 0.93373 0.89570 1.00057 1.22386 1.01601 1.02823 0.91837 1.21873 0.95116 0.92883 0.99879 1.19640 1.02009 0.95490 0.93001 1.19037 0.98434 0.95899 0.95075 1.21681 0.98431 1.01750 0.91743 1.18804 0.92705 0.92333 0.92996 1.19903 1.18588 0.96638 1.13367 0.88409 1.26870 1.00124 0.95173 0.96034 1.69779 1.36629 1.02828 1.34105 0.85122 0.76880 0.78130 0.79030 1.18291 1.19342 1.17913 1.22600 0.94498 1.01487 0.97762 1.66265 1.22905 1.30157 1.01977 1.17656 0.95140 0.98486 0.89912 1.91389 1.63950 1.91594 1.65744 0.91831 0.94453 0.90287 0.92084 0.89358 0.78873 0.81014 0.85105 0.85148 0.89312 0.82599 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.25 9.89 71.98 0.71 -3.54 16 2 C -0.08 -2.72 5.86 29.85 0.17 -2.55 16 3 C 0.13 5.12 6.02 42.83 0.26 5.38 16 4 N -0.50 -16.99 10.26 -183.04 -1.88 -18.87 16 5 C 0.09 2.51 11.17 84.70 0.95 3.46 16 6 C -0.17 -4.52 10.10 22.33 0.23 -4.29 16 7 C -0.07 -2.55 9.92 22.68 0.22 -2.32 16 8 C -0.10 -4.06 4.99 -19.95 -0.10 -4.16 16 9 C -0.08 -3.74 4.51 -19.95 -0.09 -3.83 16 10 C -0.11 -5.43 8.53 23.12 0.20 -5.23 16 11 C 0.04 1.81 5.59 -21.21 -0.12 1.69 16 12 C -0.46 -21.50 9.09 23.44 0.21 -21.29 16 13 H 0.10 4.27 7.88 -2.91 -0.02 4.25 16 14 C 0.04 1.57 5.24 85.24 0.45 2.02 16 15 N -0.81 -37.20 10.77 21.82 0.24 -36.97 16 16 Si 0.99 33.33 29.58 68.60 2.03 35.36 16 17 H -0.26 -8.61 7.11 99.48 0.71 -7.90 16 18 H -0.27 -8.70 7.11 99.48 0.71 -8.00 16 19 H -0.26 -8.32 7.11 99.48 0.71 -7.61 16 20 C 0.00 -0.09 10.96 85.37 0.94 0.85 16 21 N -0.50 -25.15 10.33 -193.73 -2.00 -27.15 16 22 C 0.14 6.94 6.93 85.08 0.59 7.53 16 23 F -0.15 -7.05 16.10 44.97 0.72 -6.32 16 24 H 0.06 1.90 8.14 -2.39 -0.02 1.88 16 25 H 0.04 1.34 8.14 -2.39 -0.02 1.32 16 26 H 0.08 2.16 8.14 -2.38 -0.02 2.14 16 27 H 0.06 2.50 5.04 -2.39 -0.01 2.49 16 28 H 0.09 2.88 8.14 -2.38 -0.02 2.86 16 29 H 0.19 3.44 8.06 -2.91 -0.02 3.41 16 30 H 0.17 3.17 8.06 -2.91 -0.02 3.15 16 31 H 0.13 4.66 8.06 -2.91 -0.02 4.63 16 32 H 0.13 6.58 6.12 -2.91 -0.02 6.56 16 33 H 0.30 12.26 8.30 -92.71 -0.77 11.49 16 34 H 0.16 6.70 8.06 -2.91 -0.02 6.68 16 Total: -1.00 -57.73 299.32 4.85 -52.88 By element: Atomic # 1 Polarization: 26.23 SS G_CDS: 1.13 Total: 27.35 kcal Atomic # 6 Polarization: -30.90 SS G_CDS: 4.62 Total: -26.29 kcal Atomic # 7 Polarization: -79.34 SS G_CDS: -3.65 Total: -82.99 kcal Atomic # 9 Polarization: -7.05 SS G_CDS: 0.72 Total: -6.32 kcal Atomic # 14 Polarization: 33.33 SS G_CDS: 2.03 Total: 35.36 kcal Total: -57.73 4.85 -52.88 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001242524270.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.011 kcal (2) G-P(sol) polarization free energy of solvation -57.733 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.722 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.851 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -52.882 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.871 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds