Wall clock time and date at job start Mon Mar 30 2020 01:02:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 C 1.38352 * 120.30590 * 2 1 4 4 N 1.31952 * 121.14181 * 179.97438 * 3 2 1 5 5 C 1.31903 * 121.84542 * 0.02562 * 4 3 2 6 6 F 1.35101 * 119.75770 * 179.97438 * 5 4 3 7 7 C 1.39983 * 120.47572 * 0.02562 * 5 4 3 8 8 C 1.47740 * 120.57884 * 179.97438 * 7 5 4 9 9 N 1.32614 * 119.99523 * 49.48259 * 8 7 5 10 10 C 1.31743 * 121.71320 * 179.97438 * 9 8 7 11 11 C 1.50699 * 119.23772 * 180.02562 * 10 9 8 12 12 C 1.38871 * 121.51188 * 359.97438 * 10 9 8 13 13 C 1.36876 * 119.80530 * 359.97438 * 12 10 9 14 14 C 1.41122 * 118.40088 * 359.73069 * 13 12 10 15 15 C 1.40874 * 120.71838 * 180.26474 * 14 13 12 16 16 H 1.08004 * 119.99337 * 206.70414 * 15 14 13 17 17 C 1.40058 * 120.00327 * 26.71193 * 15 14 13 18 18 N 1.30786 * 120.00017 * 12.11473 * 17 15 14 19 19 Si 1.86802 * 120.00094 * 192.12277 * 17 15 14 20 20 H 1.48490 * 109.46975 * 359.97438 * 19 17 15 21 21 H 1.48507 * 109.46953 * 119.99607 * 19 17 15 22 22 H 1.48502 * 109.46904 * 239.99724 * 19 17 15 23 23 C 1.38345 * 120.31033 * 179.72209 * 2 1 3 24 24 H 1.08994 * 109.46901 * 90.00251 * 1 2 3 25 25 H 1.09008 * 109.46910 * 209.99772 * 1 2 3 26 26 H 1.08995 * 109.47117 * 329.99605 * 1 2 3 27 27 H 1.07999 * 119.42600 * 0.02562 * 3 2 1 28 28 H 1.09005 * 109.46817 * 90.00658 * 11 10 9 29 29 H 1.09002 * 109.46757 * 209.99721 * 11 10 9 30 30 H 1.08990 * 109.47702 * 330.00157 * 11 10 9 31 31 H 1.07997 * 120.09513 * 180.02562 * 12 10 9 32 32 H 1.08001 * 120.79819 * 180.02562 * 13 12 10 33 33 H 0.97000 * 120.00071 * 180.02562 * 18 17 15 34 34 H 1.08006 * 120.84282 * 359.97438 * 23 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2052 1.1945 0.0000 4 7 3.5246 1.2137 0.0005 5 6 4.2368 0.1035 0.0005 6 9 5.5860 0.1724 0.0005 7 6 3.6047 -1.1455 -0.0005 8 6 4.4002 -2.3904 -0.0011 9 7 5.3856 -2.5479 0.8723 10 6 6.1160 -3.6440 0.9022 11 6 7.2219 -3.7641 1.9189 12 6 5.8894 -4.6914 0.0190 13 6 4.8870 -4.5950 -0.9080 14 6 4.1043 -3.4210 -0.9306 15 6 3.0565 -3.2725 -1.8604 16 1 2.7528 -2.2861 -2.1786 17 6 2.4086 -4.4038 -2.3721 18 7 2.6044 -5.5742 -1.8222 19 14 1.2648 -4.2412 -3.8400 20 1 1.2142 -2.8218 -4.2732 21 1 1.7686 -5.0821 -4.9556 22 1 -0.0980 -4.6906 -3.4578 23 6 2.2052 -1.1943 0.0058 24 1 -0.3633 0.0000 -1.0276 25 1 -0.3633 -0.8901 0.5138 26 1 -0.3633 0.8899 0.5139 27 1 1.6608 2.1272 0.0004 28 1 6.8296 -4.2140 2.8309 29 1 8.0177 -4.3915 1.5175 30 1 7.6181 -2.7739 2.1435 31 1 6.5019 -5.5798 0.0641 32 1 4.6965 -5.4001 -1.6022 33 1 2.1560 -6.3579 -2.1768 34 1 1.6841 -2.1403 0.0108 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001243162418.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:02:08 Heat of formation + Delta-G solvation = 1.648816 kcal Electronic energy + Delta-G solvation = -20374.228966 eV Core-core repulsion = 17185.563436 eV Total energy + Delta-G solvation = -3188.665530 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 272.102 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -48.12379 -39.62221 -38.39585 -34.50093 -33.12042 -32.77914 -30.97114 -29.77230 -27.87635 -26.58249 -24.83491 -23.31948 -22.25203 -20.75822 -20.22287 -17.57981 -17.25443 -16.72108 -15.74927 -15.35842 -15.14544 -14.44763 -14.12220 -13.94622 -13.46133 -13.25257 -13.08214 -12.85781 -12.61032 -12.20052 -12.06489 -11.92258 -11.82252 -11.79870 -11.57847 -11.27362 -11.20715 -11.05029 -10.65284 -10.05098 -9.58670 -9.22998 -9.18532 -8.46320 -8.16384 -8.13205 -7.47569 -7.01478 -4.66338 1.38431 1.70590 2.46930 2.82281 2.91024 2.96381 3.04207 3.69702 4.14634 4.21734 4.40181 5.06445 5.17775 5.19046 5.41731 5.46437 5.57206 5.79999 5.89999 5.99663 6.07156 6.15860 6.24097 6.37871 6.40247 6.49319 6.62534 6.69056 6.78688 6.89081 6.92513 7.05236 7.23597 7.55456 7.69196 7.79118 8.17619 8.23608 8.45525 8.52432 9.46631 9.85049 Molecular weight = 272.10amu Principal moments of inertia in cm(-1) A = 0.011479 B = 0.010488 C = 0.006043 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2438.681547 B = 2668.974448 C = 4632.154543 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.102 4.102 2 C -0.159 4.159 3 C 0.107 3.893 4 N -0.520 5.520 5 C 0.296 3.704 6 F -0.109 7.109 7 C -0.033 4.033 8 C 0.006 3.994 9 N -0.441 5.441 10 C -0.002 4.002 11 C -0.075 4.075 12 C -0.140 4.140 13 C -0.125 4.125 14 C 0.088 3.912 15 C -0.439 4.439 16 H 0.086 0.914 17 C 0.074 3.926 18 N -0.784 5.784 19 Si 0.910 3.090 20 H -0.257 1.257 21 H -0.269 1.269 22 H -0.270 1.270 23 C -0.031 4.031 24 H 0.070 0.930 25 H 0.067 0.933 26 H 0.065 0.935 27 H 0.155 0.845 28 H 0.050 0.950 29 H 0.053 0.947 30 H 0.057 0.943 31 H 0.101 0.899 32 H 0.132 0.868 33 H 0.286 0.714 34 H 0.149 0.851 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.975 3.261 0.634 5.180 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C -0.161 4.161 3 C -0.050 4.050 4 N -0.233 5.233 5 C 0.143 3.857 6 F -0.088 7.088 7 C -0.037 4.037 8 C -0.131 4.131 9 N -0.149 5.149 10 C -0.145 4.145 11 C -0.133 4.133 12 C -0.160 4.160 13 C -0.151 4.151 14 C 0.083 3.917 15 C -0.467 4.467 16 H 0.104 0.896 17 C -0.146 4.146 18 N -0.408 5.408 19 Si 0.734 3.266 20 H -0.180 1.180 21 H -0.194 1.194 22 H -0.195 1.195 23 C -0.057 4.057 24 H 0.088 0.912 25 H 0.086 0.914 26 H 0.084 0.916 27 H 0.172 0.828 28 H 0.069 0.931 29 H 0.072 0.928 30 H 0.076 0.924 31 H 0.119 0.881 32 H 0.150 0.850 33 H 0.097 0.903 34 H 0.166 0.834 Dipole moment (debyes) X Y Z Total from point charges -3.367 4.453 1.205 5.711 hybrid contribution -0.796 -1.607 -1.301 2.216 sum -4.163 2.846 -0.095 5.043 Atomic orbital electron populations 1.20627 0.90297 1.02656 1.02348 1.20772 0.97493 0.93848 1.03977 1.22142 0.87655 0.97408 0.97826 1.66826 1.09180 1.30993 1.16318 1.18329 0.78619 0.89174 0.99611 1.91580 1.27213 1.96817 1.93181 1.19162 0.93406 0.91406 0.99714 1.19032 0.99887 0.95387 0.98841 1.66847 1.03799 1.23071 1.21175 1.20287 1.00904 0.91865 1.01444 1.20298 0.95224 1.01161 0.96574 1.21301 0.99038 0.98099 0.97555 1.21485 0.94266 0.99651 0.99649 1.18289 0.91813 0.90876 0.90676 1.19614 1.13378 0.94181 1.19571 0.89632 1.26014 0.97001 0.94495 0.97041 1.69745 1.35336 1.00243 1.35506 0.86189 0.79495 0.80260 0.80660 1.18003 1.19383 1.19500 1.21637 0.92171 0.98608 0.93303 0.91165 0.91364 0.91634 0.82785 0.93084 0.92773 0.92428 0.88074 0.85009 0.90291 0.83355 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.21 10.03 36.01 0.36 -0.84 16 2 C -0.16 -2.55 5.89 -104.54 -0.62 -3.17 16 3 C 0.11 1.75 10.85 -17.46 -0.19 1.56 16 4 N -0.52 -10.39 10.36 -13.19 -0.14 -10.53 16 5 C 0.30 6.60 8.39 -16.87 -0.14 6.46 16 6 F -0.11 -2.55 16.50 2.25 0.04 -2.51 16 7 C -0.03 -0.74 5.09 -104.69 -0.53 -1.27 16 8 C 0.01 0.16 6.15 -82.25 -0.51 -0.35 16 9 N -0.44 -10.97 9.73 -5.45 -0.05 -11.03 16 10 C 0.00 -0.05 6.79 -82.40 -0.56 -0.61 16 11 C -0.07 -1.36 10.15 36.01 0.37 -1.00 16 12 C -0.14 -3.15 9.64 -39.84 -0.38 -3.54 16 13 C -0.12 -3.05 8.73 -38.98 -0.34 -3.39 16 14 C 0.09 2.22 5.58 -106.41 -0.59 1.63 16 15 C -0.44 -10.53 7.16 -37.90 -0.27 -10.80 16 16 H 0.09 2.03 6.60 -52.48 -0.35 1.68 16 17 C 0.07 1.67 5.26 -17.31 -0.09 1.58 16 18 N -0.78 -18.19 10.81 55.55 0.60 -17.59 16 19 Si 0.91 16.98 29.58 -169.99 -5.03 11.95 16 20 H -0.26 -4.81 7.11 56.52 0.40 -4.41 16 21 H -0.27 -4.99 7.11 56.52 0.40 -4.59 16 22 H -0.27 -4.91 7.11 56.52 0.40 -4.51 16 23 C -0.03 -0.61 7.78 -38.87 -0.30 -0.91 16 24 H 0.07 0.77 8.14 -51.93 -0.42 0.35 16 25 H 0.07 0.78 8.09 -51.92 -0.42 0.36 16 26 H 0.06 0.62 8.09 -51.93 -0.42 0.20 16 27 H 0.15 1.90 8.06 -52.49 -0.42 1.48 16 28 H 0.05 0.86 8.14 -51.93 -0.42 0.44 16 29 H 0.05 0.85 8.07 -51.93 -0.42 0.43 16 30 H 0.06 1.03 8.14 -51.93 -0.42 0.61 16 31 H 0.10 1.98 8.06 -52.49 -0.42 1.55 16 32 H 0.13 3.24 6.21 -52.49 -0.33 2.91 16 33 H 0.29 5.99 8.30 -40.82 -0.34 5.65 16 34 H 0.15 2.92 7.33 -52.48 -0.38 2.53 16 LS Contribution 299.02 15.07 4.51 4.51 Total: -1.00 -27.70 299.02 -7.44 -35.14 By element: Atomic # 1 Polarization: 8.27 SS G_CDS: -3.56 Total: 4.70 kcal Atomic # 6 Polarization: -10.85 SS G_CDS: -3.80 Total: -14.65 kcal Atomic # 7 Polarization: -39.55 SS G_CDS: 0.41 Total: -39.14 kcal Atomic # 9 Polarization: -2.55 SS G_CDS: 0.04 Total: -2.51 kcal Atomic # 14 Polarization: 16.98 SS G_CDS: -5.03 Total: 11.95 kcal Total LS contribution 4.51 Total: 4.51 kcal Total: -27.70 -7.44 -35.14 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001243162418.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.791 kcal (2) G-P(sol) polarization free energy of solvation -27.703 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.087 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.438 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.142 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.649 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds