Wall clock time and date at job start Mon Mar 30 2020 01:02:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 C 1.38352 * 120.30590 * 2 1 4 4 N 1.31952 * 121.14181 * 179.97438 * 3 2 1 5 5 C 1.31903 * 121.84542 * 0.02562 * 4 3 2 6 6 F 1.35101 * 119.75770 * 179.97438 * 5 4 3 7 7 C 1.39983 * 120.47572 * 0.02562 * 5 4 3 8 8 C 1.47740 * 120.57884 * 179.97438 * 7 5 4 9 9 N 1.32614 * 119.99523 * 49.48259 * 8 7 5 10 10 C 1.31743 * 121.71320 * 179.97438 * 9 8 7 11 11 C 1.50699 * 119.23772 * 180.02562 * 10 9 8 12 12 C 1.38871 * 121.51188 * 359.97438 * 10 9 8 13 13 C 1.36876 * 119.80530 * 359.97438 * 12 10 9 14 14 C 1.41122 * 118.40088 * 359.73069 * 13 12 10 15 15 C 1.40874 * 120.71838 * 180.26474 * 14 13 12 16 16 H 1.08004 * 119.99337 * 206.70414 * 15 14 13 17 17 C 1.40058 * 120.00327 * 26.71193 * 15 14 13 18 18 N 1.30786 * 120.00017 * 12.11473 * 17 15 14 19 19 Si 1.86802 * 120.00094 * 192.12277 * 17 15 14 20 20 H 1.48490 * 109.46975 * 359.97438 * 19 17 15 21 21 H 1.48507 * 109.46953 * 119.99607 * 19 17 15 22 22 H 1.48502 * 109.46904 * 239.99724 * 19 17 15 23 23 C 1.38345 * 120.31033 * 179.72209 * 2 1 3 24 24 H 1.08994 * 109.46901 * 90.00251 * 1 2 3 25 25 H 1.09008 * 109.46910 * 209.99772 * 1 2 3 26 26 H 1.08995 * 109.47117 * 329.99605 * 1 2 3 27 27 H 1.07999 * 119.42600 * 0.02562 * 3 2 1 28 28 H 1.09005 * 109.46817 * 90.00658 * 11 10 9 29 29 H 1.09002 * 109.46757 * 209.99721 * 11 10 9 30 30 H 1.08990 * 109.47702 * 330.00157 * 11 10 9 31 31 H 1.07997 * 120.09513 * 180.02562 * 12 10 9 32 32 H 1.08001 * 120.79819 * 180.02562 * 13 12 10 33 33 H 0.97000 * 120.00071 * 180.02562 * 18 17 15 34 34 H 1.08006 * 120.84282 * 359.97438 * 23 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2052 1.1945 0.0000 4 7 3.5246 1.2137 0.0005 5 6 4.2368 0.1035 0.0005 6 9 5.5860 0.1724 0.0005 7 6 3.6047 -1.1455 -0.0005 8 6 4.4002 -2.3904 -0.0011 9 7 5.3856 -2.5479 0.8723 10 6 6.1160 -3.6440 0.9022 11 6 7.2219 -3.7641 1.9189 12 6 5.8894 -4.6914 0.0190 13 6 4.8870 -4.5950 -0.9080 14 6 4.1043 -3.4210 -0.9306 15 6 3.0565 -3.2725 -1.8604 16 1 2.7528 -2.2861 -2.1786 17 6 2.4086 -4.4038 -2.3721 18 7 2.6044 -5.5742 -1.8222 19 14 1.2648 -4.2412 -3.8400 20 1 1.2142 -2.8218 -4.2732 21 1 1.7686 -5.0821 -4.9556 22 1 -0.0980 -4.6906 -3.4578 23 6 2.2052 -1.1943 0.0058 24 1 -0.3633 0.0000 -1.0276 25 1 -0.3633 -0.8901 0.5138 26 1 -0.3633 0.8899 0.5139 27 1 1.6608 2.1272 0.0004 28 1 6.8296 -4.2140 2.8309 29 1 8.0177 -4.3915 1.5175 30 1 7.6181 -2.7739 2.1435 31 1 6.5019 -5.5798 0.0641 32 1 4.6965 -5.4001 -1.6022 33 1 2.1560 -6.3579 -2.1768 34 1 1.6841 -2.1403 0.0108 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001243162418.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:02:07 Heat of formation + Delta-G solvation = -13.559467 kcal Electronic energy + Delta-G solvation = -20374.888446 eV Core-core repulsion = 17185.563436 eV Total energy + Delta-G solvation = -3189.325010 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 272.102 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -49.83266 -41.16505 -40.09720 -36.24255 -34.62103 -34.23928 -32.74412 -31.36985 -29.57391 -27.80084 -26.48251 -24.93637 -23.84088 -22.48481 -21.82871 -19.34096 -18.86889 -18.26817 -17.46107 -17.00237 -16.75451 -16.16217 -15.69223 -15.44578 -14.93527 -14.64306 -14.60267 -14.41716 -14.18962 -13.82922 -13.54275 -13.34470 -13.20431 -13.17317 -13.07229 -12.80825 -12.68353 -12.63816 -12.19511 -11.75506 -11.26478 -10.82335 -10.71099 -10.14754 -9.96193 -9.74622 -9.19629 -8.72496 -6.47182 -0.14355 0.18793 0.76453 1.06488 1.37569 1.47439 1.51902 2.14224 2.61636 2.68651 2.72480 3.49070 3.63805 3.77338 3.97102 4.04899 4.25026 4.35429 4.45054 4.59328 4.81489 4.86511 4.90096 4.93369 4.95297 4.98022 5.12248 5.19229 5.22084 5.28905 5.29399 5.40000 5.70898 5.79057 5.90763 6.00573 6.42240 6.66518 6.69777 6.74210 7.66423 8.17622 Molecular weight = 272.10amu Principal moments of inertia in cm(-1) A = 0.011479 B = 0.010488 C = 0.006043 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2438.681547 B = 2668.974448 C = 4632.154543 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.101 4.101 2 C -0.139 4.139 3 C 0.116 3.884 4 N -0.529 5.529 5 C 0.266 3.734 6 F -0.127 7.127 7 C -0.060 4.060 8 C -0.012 4.012 9 N -0.465 5.465 10 C -0.018 4.018 11 C -0.069 4.069 12 C -0.142 4.142 13 C -0.147 4.147 14 C 0.060 3.940 15 C -0.455 4.455 16 H 0.080 0.920 17 C 0.041 3.959 18 N -0.810 5.810 19 Si 0.979 3.021 20 H -0.258 1.258 21 H -0.265 1.265 22 H -0.257 1.257 23 C -0.041 4.041 24 H 0.086 0.914 25 H 0.071 0.929 26 H 0.099 0.901 27 H 0.206 0.794 28 H 0.065 0.935 29 H 0.081 0.919 30 H 0.055 0.945 31 H 0.131 0.869 32 H 0.125 0.875 33 H 0.295 0.705 34 H 0.139 0.861 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.039 4.097 0.361 7.306 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C -0.141 4.141 3 C -0.041 4.041 4 N -0.243 5.243 5 C 0.114 3.886 6 F -0.107 7.107 7 C -0.064 4.064 8 C -0.150 4.150 9 N -0.174 5.174 10 C -0.161 4.161 11 C -0.127 4.127 12 C -0.162 4.162 13 C -0.173 4.173 14 C 0.056 3.944 15 C -0.483 4.483 16 H 0.098 0.902 17 C -0.176 4.176 18 N -0.434 5.434 19 Si 0.799 3.201 20 H -0.181 1.181 21 H -0.190 1.190 22 H -0.181 1.181 23 C -0.067 4.067 24 H 0.104 0.896 25 H 0.090 0.910 26 H 0.118 0.882 27 H 0.223 0.777 28 H 0.084 0.916 29 H 0.100 0.900 30 H 0.074 0.926 31 H 0.149 0.851 32 H 0.143 0.857 33 H 0.106 0.894 34 H 0.157 0.843 Dipole moment (debyes) X Y Z Total from point charges -5.413 5.281 0.951 7.621 hybrid contribution -0.222 -1.822 -1.158 2.170 sum -5.634 3.458 -0.207 6.614 Atomic orbital electron populations 1.20775 0.86511 1.04591 1.03880 1.21258 0.99945 0.92275 1.00642 1.23069 0.86526 0.99502 0.95025 1.66915 1.10848 1.29940 1.16622 1.18441 0.78266 0.89900 1.01978 1.91511 1.28581 1.96940 1.93628 1.19262 0.94600 0.90752 1.01810 1.19477 1.00268 0.96453 0.98761 1.66954 1.04522 1.24127 1.21794 1.21088 1.01490 0.91321 1.02201 1.20350 0.94452 1.01852 0.96012 1.21608 0.98729 0.99126 0.96762 1.21560 0.95430 0.99674 1.00641 1.18629 0.92783 0.91523 0.91496 1.19673 1.13838 0.94598 1.20226 0.90163 1.26772 0.98065 0.93699 0.99085 1.69776 1.36099 1.01015 1.36556 0.85179 0.77876 0.80012 0.77051 1.18120 1.18994 1.18116 1.21696 0.91166 0.99836 0.94010 0.89574 0.91049 0.88186 0.77709 0.91644 0.90024 0.92600 0.85117 0.85743 0.89371 0.84283 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.95 10.03 71.24 0.71 -1.24 16 2 C -0.14 -4.15 5.89 -19.81 -0.12 -4.26 16 3 C 0.12 3.46 10.85 84.70 0.92 4.38 16 4 N -0.53 -20.75 10.36 -195.65 -2.03 -22.77 16 5 C 0.27 12.20 8.39 85.11 0.71 12.91 16 6 F -0.13 -6.26 16.50 44.97 0.74 -5.52 16 7 C -0.06 -2.80 5.09 -19.91 -0.10 -2.90 16 8 C -0.01 -0.63 6.15 42.45 0.26 -0.37 16 9 N -0.47 -24.05 9.73 -171.17 -1.66 -25.71 16 10 C -0.02 -0.86 6.79 42.72 0.29 -0.57 16 11 C -0.07 -2.47 10.15 71.24 0.72 -1.74 16 12 C -0.14 -6.53 9.64 22.10 0.21 -6.32 16 13 C -0.15 -7.47 8.73 22.66 0.20 -7.28 16 14 C 0.06 3.17 5.58 -21.02 -0.12 3.06 16 15 C -0.45 -22.53 7.16 23.36 0.17 -22.36 16 16 H 0.08 3.93 6.60 -2.91 -0.02 3.91 16 17 C 0.04 1.87 5.26 85.29 0.45 2.32 16 18 N -0.81 -38.08 10.81 21.85 0.24 -37.84 16 19 Si 0.98 34.31 29.58 68.60 2.03 36.34 16 20 H -0.26 -8.99 7.11 99.48 0.71 -8.28 16 21 H -0.27 -9.09 7.11 99.48 0.71 -8.39 16 22 H -0.26 -8.42 7.11 99.48 0.71 -7.72 16 23 C -0.04 -1.60 7.78 22.73 0.18 -1.42 16 24 H 0.09 1.50 8.14 -2.39 -0.02 1.48 16 25 H 0.07 1.39 8.09 -2.38 -0.02 1.37 16 26 H 0.10 1.32 8.09 -2.39 -0.02 1.30 16 27 H 0.21 3.93 8.06 -2.91 -0.02 3.91 16 28 H 0.06 2.13 8.14 -2.38 -0.02 2.11 16 29 H 0.08 2.42 8.07 -2.39 -0.02 2.40 16 30 H 0.05 1.99 8.14 -2.39 -0.02 1.97 16 31 H 0.13 5.03 8.06 -2.91 -0.02 5.01 16 32 H 0.12 6.36 6.21 -2.91 -0.02 6.34 16 33 H 0.30 12.38 8.30 -92.71 -0.77 11.61 16 34 H 0.14 5.62 7.33 -2.91 -0.02 5.60 16 Total: -1.00 -63.61 299.02 4.94 -58.67 By element: Atomic # 1 Polarization: 21.49 SS G_CDS: 1.13 Total: 22.62 kcal Atomic # 6 Polarization: -30.28 SS G_CDS: 4.49 Total: -25.79 kcal Atomic # 7 Polarization: -82.87 SS G_CDS: -3.46 Total: -86.33 kcal Atomic # 9 Polarization: -6.26 SS G_CDS: 0.74 Total: -5.52 kcal Atomic # 14 Polarization: 34.31 SS G_CDS: 2.03 Total: 36.34 kcal Total: -63.61 4.94 -58.67 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001243162418.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.112 kcal (2) G-P(sol) polarization free energy of solvation -63.608 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.496 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.936 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.672 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.559 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds