Wall clock time and date at job start Mon Mar 30 2020 01:02:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.38333 * 120.31277 * 2 1 4 4 N 1.31963 * 121.12284 * 179.97438 * 3 2 1 5 5 C 1.31899 * 121.84281 * 359.69576 * 4 3 2 6 6 F 1.35102 * 119.76062 * 180.28891 * 5 4 3 7 7 C 1.39933 * 120.48553 * 0.59280 * 5 4 3 8 8 C 1.47881 * 120.57665 * 179.70031 * 7 5 4 9 9 C 1.39936 * 119.45541 * 186.54410 * 8 7 5 10 10 C 1.36588 * 119.46650 * 180.02562 * 9 8 7 11 11 C 1.41314 * 118.41532 * 359.97438 * 10 9 8 12 12 C 1.41040 * 120.55119 * 179.97438 * 11 10 9 13 13 H 1.08002 * 120.00691 * 157.10576 * 12 11 10 14 14 C 1.40025 * 119.99810 * 337.11289 * 12 11 10 15 15 N 1.30796 * 119.99593 * 343.38981 * 14 12 11 16 16 Si 1.86793 * 120.00088 * 163.39354 * 14 12 11 17 17 H 1.48500 * 109.47393 * 89.99558 * 16 14 12 18 18 H 1.48497 * 109.47335 * 209.99647 * 16 14 12 19 19 H 1.48508 * 109.47026 * 329.99672 * 16 14 12 20 20 C 1.40948 * 118.90322 * 0.24999 * 11 10 9 21 21 C 1.50692 * 119.80276 * 179.72558 * 20 11 10 22 22 N 1.31273 * 120.40141 * 359.47938 * 20 11 10 23 23 C 1.38376 * 120.31109 * 179.97438 * 2 1 3 24 24 H 1.08994 * 109.47613 * 270.02597 * 1 2 3 25 25 H 1.09005 * 109.46594 * 30.02524 * 1 2 3 26 26 H 1.08999 * 109.47196 * 150.02115 * 1 2 3 27 27 H 1.07998 * 119.44217 * 359.97438 * 3 2 1 28 28 H 1.07999 * 120.26590 * 359.97438 * 9 8 7 29 29 H 1.07995 * 120.78818 * 180.02562 * 10 9 8 30 30 H 0.97003 * 119.99665 * 180.02562 * 15 14 12 31 31 H 1.09002 * 109.47367 * 90.00134 * 21 20 11 32 32 H 1.08998 * 109.47931 * 210.00343 * 21 20 11 33 33 H 1.09003 * 109.46932 * 330.00216 * 21 20 11 34 34 H 1.08005 * 120.83679 * 0.05271 * 23 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2052 1.1942 0.0000 4 7 3.5247 1.2129 0.0005 5 6 4.2363 0.1023 0.0070 6 9 5.5856 0.1705 0.0131 7 6 3.6041 -1.1460 0.0011 8 6 4.4001 -2.3923 0.0017 9 6 3.7508 -3.6235 -0.1431 10 6 4.4857 -4.7748 -0.1420 11 6 5.8877 -4.6776 0.0061 12 6 6.6900 -5.8376 0.0140 13 1 7.7371 -5.7718 -0.2422 14 6 6.1288 -7.0746 0.3538 15 7 4.9754 -7.1226 0.9688 16 14 7.0274 -8.6562 -0.0709 17 1 7.9226 -9.0339 1.0521 18 1 6.0392 -9.7402 -0.3022 19 1 7.8348 -8.4518 -1.3004 20 6 6.4705 -3.4026 0.1519 21 6 7.9629 -3.2757 0.3175 22 7 5.7217 -2.3245 0.1393 23 6 2.2053 -1.1946 0.0005 24 1 -0.3634 0.0005 1.0276 25 1 -0.3633 0.8898 -0.5143 26 1 -0.3633 -0.8902 -0.5135 27 1 1.6612 2.1272 -0.0004 28 1 2.6773 -3.6631 -0.2539 29 1 4.0068 -5.7364 -0.2526 30 1 4.5868 -7.9796 1.2046 31 1 8.4303 -3.1777 -0.6624 32 1 8.1885 -2.3941 0.9173 33 1 8.3498 -4.1638 0.8173 34 1 1.6842 -2.1406 0.0001 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001243163357.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:02:57 Heat of formation + Delta-G solvation = 6.660754 kcal Electronic energy + Delta-G solvation = -19850.886516 eV Core-core repulsion = 16662.438320 eV Total energy + Delta-G solvation = -3188.448196 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 272.102 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -48.03264 -39.70615 -38.45370 -34.56118 -33.29864 -32.75267 -31.09254 -30.11956 -27.18227 -26.63664 -25.46808 -23.50532 -22.24368 -20.59781 -20.19428 -17.62521 -17.36105 -16.80233 -15.70827 -15.31882 -15.21851 -14.68668 -14.06336 -14.01840 -13.59417 -13.20210 -13.15353 -12.88163 -12.65564 -12.23004 -12.07798 -12.06553 -11.78999 -11.71743 -11.51479 -11.37300 -11.22788 -10.96855 -10.77354 -9.96024 -9.76481 -9.38076 -9.28153 -8.53139 -8.33696 -8.11009 -7.39895 -7.09478 -4.66241 1.16537 1.50112 2.53093 2.84137 2.87554 2.91850 3.06708 3.63874 3.98816 4.17000 4.45128 4.88199 5.04024 5.08357 5.22570 5.44568 5.49638 5.61738 5.74876 5.90332 5.99144 6.07573 6.27611 6.37221 6.44867 6.54842 6.60507 6.66563 6.74922 6.77368 6.99903 7.11748 7.18994 7.54135 7.65546 7.75455 8.10267 8.19189 8.37886 8.49734 9.48740 9.73425 Molecular weight = 272.10amu Principal moments of inertia in cm(-1) A = 0.028785 B = 0.004897 C = 0.004232 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 972.504795 B = 5715.950508 C = 6614.569514 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.103 4.103 2 C -0.147 4.147 3 C 0.093 3.907 4 N -0.513 5.513 5 C 0.294 3.706 6 F -0.094 7.094 7 C -0.039 4.039 8 C -0.016 4.016 9 C -0.117 4.117 10 C -0.147 4.147 11 C 0.074 3.926 12 C -0.419 4.419 13 H 0.092 0.908 14 C 0.070 3.930 15 N -0.770 5.770 16 Si 0.917 3.083 17 H -0.265 1.265 18 H -0.272 1.272 19 H -0.256 1.256 20 C 0.012 3.988 21 C -0.072 4.072 22 N -0.432 5.432 23 C -0.077 4.077 24 H 0.070 0.930 25 H 0.066 0.934 26 H 0.067 0.933 27 H 0.155 0.845 28 H 0.101 0.899 29 H 0.131 0.869 30 H 0.289 0.711 31 H 0.050 0.950 32 H 0.052 0.948 33 H 0.066 0.934 34 H 0.139 0.861 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.995 3.625 -1.344 7.133 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C -0.149 4.149 3 C -0.064 4.064 4 N -0.227 5.227 5 C 0.140 3.860 6 F -0.073 7.073 7 C -0.043 4.043 8 C -0.149 4.149 9 C -0.138 4.138 10 C -0.171 4.171 11 C 0.069 3.931 12 C -0.447 4.447 13 H 0.110 0.890 14 C -0.152 4.152 15 N -0.392 5.392 16 Si 0.740 3.260 17 H -0.189 1.189 18 H -0.197 1.197 19 H -0.179 1.179 20 C -0.135 4.135 21 C -0.130 4.130 22 N -0.140 5.140 23 C -0.103 4.103 24 H 0.088 0.912 25 H 0.085 0.915 26 H 0.086 0.914 27 H 0.172 0.828 28 H 0.119 0.881 29 H 0.149 0.851 30 H 0.100 0.900 31 H 0.069 0.931 32 H 0.071 0.929 33 H 0.085 0.915 34 H 0.157 0.843 Dipole moment (debyes) X Y Z Total from point charges -5.309 5.054 -1.147 7.420 hybrid contribution -0.373 -2.376 -0.163 2.411 sum -5.682 2.679 -1.311 6.417 Atomic orbital electron populations 1.20636 0.90293 1.02774 1.02305 1.20703 0.97340 0.93814 1.03036 1.22106 0.87718 0.97357 0.99192 1.66860 1.09202 1.31161 1.15449 1.18199 0.79191 0.88729 0.99895 1.91653 1.26204 1.96649 1.92781 1.19485 0.93261 0.92275 0.99283 1.18375 0.89523 0.89753 1.17295 1.21207 0.98554 0.93088 1.00934 1.21357 0.94223 0.97464 1.04097 1.18478 0.92975 0.93021 0.88625 1.19812 0.97763 0.90929 1.36181 0.88987 1.26172 0.94855 1.01986 0.92169 1.69779 1.15830 1.29066 1.24557 0.86140 0.80030 0.79334 0.80495 1.18944 1.19705 1.17942 1.21027 0.95295 0.88281 1.08922 1.20270 0.90963 1.01296 1.00472 1.66888 1.04957 1.33223 1.08963 1.21381 0.92025 0.98377 0.98518 0.91181 0.91460 0.91450 0.82821 0.88118 0.85094 0.90000 0.93150 0.92906 0.91476 0.84291 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.01 10.03 36.00 0.36 -0.65 16 2 C -0.15 -2.09 5.89 -104.54 -0.62 -2.70 16 3 C 0.09 1.41 10.85 -17.46 -0.19 1.22 16 4 N -0.51 -9.79 10.36 -13.21 -0.14 -9.93 16 5 C 0.29 6.28 8.41 -16.89 -0.14 6.14 16 6 F -0.09 -2.16 15.37 2.25 0.03 -2.13 16 7 C -0.04 -0.81 5.89 -104.67 -0.62 -1.43 16 8 C -0.02 -0.38 6.73 -82.76 -0.56 -0.94 16 9 C -0.12 -2.66 9.39 -39.54 -0.37 -3.03 16 10 C -0.15 -3.59 8.75 -39.01 -0.34 -3.93 16 11 C 0.07 1.86 5.61 -106.64 -0.60 1.26 16 12 C -0.42 -9.95 8.20 -37.85 -0.31 -10.26 16 13 H 0.09 2.05 6.77 -52.49 -0.36 1.70 16 14 C 0.07 1.56 5.20 -17.32 -0.09 1.47 16 15 N -0.77 -17.79 10.81 55.55 0.60 -17.19 16 16 Si 0.92 16.55 29.59 -169.99 -5.03 11.52 16 17 H -0.26 -4.73 7.11 56.52 0.40 -4.33 16 18 H -0.27 -4.82 7.11 56.52 0.40 -4.42 16 19 H -0.26 -4.60 7.11 56.52 0.40 -4.20 16 20 C 0.01 0.30 6.86 -81.81 -0.56 -0.26 16 21 C -0.07 -1.51 9.57 36.00 0.34 -1.16 16 22 N -0.43 -10.86 8.27 -5.40 -0.04 -10.90 16 23 C -0.08 -1.29 9.18 -38.89 -0.36 -1.65 16 24 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 25 H 0.07 0.54 8.09 -51.93 -0.42 0.12 16 26 H 0.07 0.61 8.09 -51.93 -0.42 0.19 16 27 H 0.15 1.75 8.06 -52.49 -0.42 1.32 16 28 H 0.10 1.95 6.27 -52.49 -0.33 1.62 16 29 H 0.13 3.19 6.09 -52.49 -0.32 2.87 16 30 H 0.29 5.99 8.30 -40.82 -0.34 5.65 16 31 H 0.05 0.97 8.14 -51.93 -0.42 0.54 16 32 H 0.05 1.05 8.14 -51.93 -0.42 0.63 16 33 H 0.07 1.33 6.72 -51.93 -0.35 0.98 16 34 H 0.14 2.09 6.33 -52.48 -0.33 1.76 16 LS Contribution 295.42 15.07 4.45 4.45 Total: -1.00 -27.96 295.42 -7.52 -35.48 By element: Atomic # 1 Polarization: 7.98 SS G_CDS: -3.35 Total: 4.62 kcal Atomic # 6 Polarization: -11.88 SS G_CDS: -4.04 Total: -15.93 kcal Atomic # 7 Polarization: -38.44 SS G_CDS: 0.42 Total: -38.02 kcal Atomic # 9 Polarization: -2.16 SS G_CDS: 0.03 Total: -2.13 kcal Atomic # 14 Polarization: 16.55 SS G_CDS: -5.03 Total: 11.52 kcal Total LS contribution 4.45 Total: 4.45 kcal Total: -27.96 -7.52 -35.48 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001243163357.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.140 kcal (2) G-P(sol) polarization free energy of solvation -27.959 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 14.181 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.520 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.479 kcal (6) G-S(sol) free energy of system = (1) + (5) 6.661 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds