Wall clock time and date at job start Mon Mar 30 2020 01:01:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50693 * 1 3 3 N 1.31262 * 119.79748 * 2 1 4 4 C 1.33046 * 121.72322 * 180.02562 * 3 2 1 5 5 C 1.47895 * 119.45486 * 179.97438 * 4 3 2 6 6 C 1.39564 * 120.12508 * 186.66982 * 5 4 3 7 7 C 1.38520 * 119.80526 * 180.02562 * 6 5 4 8 8 N 1.39820 * 119.97530 * 179.97438 * 7 6 5 9 9 C 1.39092 * 120.05765 * 359.97438 * 7 6 5 10 10 C 1.38194 * 120.25144 * 0.02562 * 9 7 6 11 11 C 1.38251 * 120.19755 * 359.72632 * 10 9 7 12 12 F 1.35099 * 120.03108 * 180.29672 * 11 10 9 13 13 C 1.39938 * 121.09268 * 0.02562 * 4 3 2 14 14 C 1.36581 * 119.46369 * 359.97438 * 13 4 3 15 15 C 1.40945 * 119.80023 * 180.02562 * 2 1 3 16 16 C 1.41039 * 120.55072 * 0.26972 * 15 2 1 17 17 H 1.08000 * 119.99705 * 336.75586 * 16 15 2 18 18 C 1.40006 * 120.00176 * 156.75691 * 16 15 2 19 19 N 1.30805 * 120.00235 * 343.14275 * 18 16 15 20 20 Si 1.86800 * 120.00157 * 163.14511 * 18 16 15 21 21 H 1.48501 * 109.47297 * 59.99788 * 20 18 16 22 22 H 1.48499 * 109.47309 * 179.97438 * 20 18 16 23 23 H 1.48507 * 109.46982 * 299.99671 * 20 18 16 24 24 H 1.09004 * 109.46768 * 269.99584 * 1 2 3 25 25 H 1.09002 * 109.47482 * 29.99522 * 1 2 3 26 26 H 1.08995 * 109.47656 * 149.99782 * 1 2 3 27 27 H 1.08005 * 120.10126 * 359.97438 * 6 5 4 28 28 H 0.97007 * 120.00166 * 0.02562 * 8 7 6 29 29 H 0.96999 * 120.00624 * 179.97438 * 8 7 6 30 30 H 1.07998 * 119.87571 * 180.02562 * 9 7 6 31 31 H 1.08004 * 119.90084 * 180.02562 * 10 9 7 32 32 H 1.07993 * 120.26460 * 179.97438 * 13 4 3 33 33 H 1.07994 * 120.78935 * 179.97438 * 14 13 4 34 34 H 0.96994 * 120.00434 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 7 2.1592 1.1391 0.0000 4 6 3.4889 1.1838 -0.0005 5 6 4.1725 2.4953 -0.0011 6 6 5.5594 2.5622 -0.1418 7 6 6.1929 3.7941 -0.1409 8 7 7.5822 3.8653 -0.2811 9 6 5.4481 4.9604 -0.0006 10 6 4.0747 4.8968 0.1389 11 6 3.4311 3.6733 0.1343 12 9 2.0877 3.6154 0.2649 13 6 4.2515 0.0104 -0.0016 14 6 3.6204 -1.2009 -0.0016 15 6 2.2074 -1.2231 -0.0005 16 6 1.5097 -2.4488 -0.0068 17 1 0.4942 -2.4939 0.3580 18 6 2.1335 -3.6070 -0.4860 19 7 3.2117 -3.5130 -1.2206 20 14 1.4262 -5.2866 -0.0763 21 1 0.0406 -5.3818 -0.6019 22 1 2.2648 -6.3422 -0.6988 23 1 1.4104 -5.4711 1.3972 24 1 -0.3633 -0.0001 1.0277 25 1 -0.3634 0.8900 -0.5138 26 1 -0.3634 -0.8899 -0.5138 27 1 6.1372 1.6562 -0.2503 28 1 8.1021 3.0522 -0.3793 29 1 8.0262 4.7277 -0.2809 30 1 5.9450 5.9193 -0.0007 31 1 3.5018 5.8061 0.2471 32 1 5.3301 0.0623 -0.0024 33 1 4.1878 -2.1198 -0.0029 34 1 3.6442 -4.3153 -1.5523 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001243284776.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:01:57 Heat of formation + Delta-G solvation = -1.002875 kcal Electronic energy + Delta-G solvation = -19828.027033 eV Core-core repulsion = 16639.246517 eV Total energy + Delta-G solvation = -3188.780515 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 272.102 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -47.67847 -39.02342 -38.09223 -34.54119 -33.78036 -32.26651 -30.84819 -29.83292 -27.72247 -26.91092 -25.17871 -22.89337 -21.96342 -20.45922 -20.04777 -17.50992 -16.95308 -16.76685 -16.33127 -15.59112 -14.88585 -14.59120 -14.35022 -14.11513 -13.98293 -13.21222 -13.09092 -12.63723 -12.49436 -12.35763 -12.04355 -11.77023 -11.68490 -11.55991 -11.30009 -11.21383 -10.88690 -10.75714 -10.37713 -9.92398 -9.82193 -9.52270 -8.73180 -8.25568 -7.99322 -7.42719 -7.06350 -6.91288 -4.56352 1.48911 1.91933 2.66055 2.91469 2.93438 2.96374 3.17634 3.70806 4.04885 4.15676 4.59454 5.07633 5.18083 5.38369 5.56085 5.57344 5.84352 5.91305 6.20775 6.29902 6.36653 6.51118 6.58118 6.65576 6.67695 6.75134 6.80432 6.87146 6.99437 7.14381 7.28838 7.31415 7.64408 7.74490 7.80728 7.87824 7.94000 8.29422 8.48637 8.61093 9.61948 9.83956 Molecular weight = 272.10amu Principal moments of inertia in cm(-1) A = 0.028423 B = 0.004901 C = 0.004223 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 984.879555 B = 5712.297318 C = 6628.040334 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 C 0.008 3.992 3 N -0.429 5.429 4 C -0.014 4.014 5 C 0.034 3.966 6 C -0.186 4.186 7 C 0.204 3.796 8 N -0.884 5.884 9 C -0.200 4.200 10 C -0.111 4.111 11 C 0.048 3.952 12 F -0.127 7.127 13 C -0.119 4.119 14 C -0.148 4.148 15 C 0.074 3.926 16 C -0.425 4.425 17 H 0.090 0.910 18 C 0.071 3.929 19 N -0.774 5.774 20 Si 0.916 3.084 21 H -0.261 1.261 22 H -0.276 1.276 23 H -0.260 1.260 24 H 0.048 0.952 25 H 0.051 0.949 26 H 0.065 0.935 27 H 0.126 0.874 28 H 0.395 0.605 29 H 0.393 0.607 30 H 0.118 0.882 31 H 0.125 0.875 32 H 0.100 0.900 33 H 0.129 0.871 34 H 0.288 0.712 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.442 6.454 1.207 8.528 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C -0.139 4.139 3 N -0.137 5.137 4 C -0.147 4.147 5 C 0.031 3.969 6 C -0.209 4.209 7 C 0.101 3.899 8 N -0.424 5.424 9 C -0.223 4.223 10 C -0.131 4.131 11 C 0.026 3.974 12 F -0.105 7.105 13 C -0.139 4.139 14 C -0.173 4.173 15 C 0.069 3.931 16 C -0.454 4.454 17 H 0.108 0.892 18 C -0.150 4.150 19 N -0.397 5.397 20 Si 0.740 3.260 21 H -0.185 1.185 22 H -0.200 1.200 23 H -0.184 1.184 24 H 0.067 0.933 25 H 0.070 0.930 26 H 0.084 0.916 27 H 0.144 0.856 28 H 0.223 0.777 29 H 0.221 0.779 30 H 0.136 0.864 31 H 0.143 0.857 32 H 0.118 0.882 33 H 0.147 0.853 34 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges 5.064 7.069 1.065 8.761 hybrid contribution 0.608 -1.594 0.029 1.706 sum 5.672 5.475 1.094 7.958 Atomic orbital electron populations 1.20253 0.90989 1.01220 1.00409 1.21025 0.95248 0.87899 1.09742 1.66930 1.08285 1.30140 1.08389 1.18598 0.89248 0.90207 1.16634 1.18539 0.91865 0.91425 0.95056 1.20422 0.93268 0.95981 1.11261 1.17559 0.83979 0.93475 0.94887 1.42361 1.04036 1.10494 1.85524 1.20173 0.93140 0.96364 1.12616 1.20705 0.94502 0.96200 1.01676 1.17508 0.78106 0.93056 1.08748 1.91498 1.28558 1.97050 1.93405 1.21253 0.98439 0.93360 1.00844 1.21344 0.94683 0.96694 1.04569 1.18460 0.92626 0.93187 0.88783 1.19728 1.00600 0.91679 1.33371 0.89189 1.26131 0.94263 1.02221 0.92381 1.69782 1.16040 1.32430 1.21430 0.86212 0.80063 0.79508 0.80254 1.18512 1.20038 1.18436 0.93297 0.93010 0.91583 0.85612 0.77687 0.77925 0.86420 0.85726 0.88166 0.85296 0.90120 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -1.53 9.58 36.00 0.34 -1.18 16 2 C 0.01 0.20 6.86 -81.81 -0.56 -0.36 16 3 N -0.43 -11.09 8.22 -5.40 -0.04 -11.13 16 4 C -0.01 -0.33 6.73 -82.75 -0.56 -0.89 16 5 C 0.03 0.72 5.88 -104.85 -0.62 0.10 16 6 C -0.19 -3.30 9.25 -38.98 -0.36 -3.66 16 7 C 0.20 3.04 6.75 -83.79 -0.57 2.48 16 8 N -0.88 -9.49 9.09 32.40 0.29 -9.19 16 9 C -0.20 -2.90 9.89 -39.28 -0.39 -3.29 16 10 C -0.11 -1.83 10.00 -39.59 -0.40 -2.22 16 11 C 0.05 0.97 7.27 -38.98 -0.28 0.69 16 12 F -0.13 -2.85 15.31 2.25 0.03 -2.81 16 13 C -0.12 -2.80 9.37 -39.54 -0.37 -3.18 16 14 C -0.15 -3.76 8.74 -39.01 -0.34 -4.10 16 15 C 0.07 1.93 5.61 -106.64 -0.60 1.33 16 16 C -0.43 -10.45 8.20 -37.86 -0.31 -10.76 16 17 H 0.09 2.08 6.77 -52.49 -0.36 1.72 16 18 C 0.07 1.64 5.19 -17.33 -0.09 1.55 16 19 N -0.77 -18.50 10.83 55.55 0.60 -17.90 16 20 Si 0.92 17.11 29.59 -169.99 -5.03 12.08 16 21 H -0.26 -4.81 7.11 56.52 0.40 -4.40 16 22 H -0.28 -5.02 7.11 56.52 0.40 -4.62 16 23 H -0.26 -4.84 7.11 56.52 0.40 -4.44 16 24 H 0.05 0.97 8.14 -51.93 -0.42 0.55 16 25 H 0.05 1.06 8.14 -51.93 -0.42 0.64 16 26 H 0.07 1.35 6.71 -51.93 -0.35 1.00 16 27 H 0.13 2.09 6.20 -52.48 -0.33 1.76 16 28 H 0.40 3.69 8.84 -40.82 -0.36 3.33 16 29 H 0.39 3.25 8.84 -40.82 -0.36 2.89 16 30 H 0.12 1.34 8.06 -52.49 -0.42 0.92 16 31 H 0.12 1.73 8.06 -52.48 -0.42 1.30 16 32 H 0.10 2.06 6.20 -52.49 -0.33 1.73 16 33 H 0.13 3.26 6.11 -52.49 -0.32 2.94 16 34 H 0.29 6.20 8.30 -40.82 -0.34 5.86 16 LS Contribution 294.05 15.07 4.43 4.43 Total: -1.00 -28.81 294.05 -8.03 -36.84 By element: Atomic # 1 Polarization: 14.40 SS G_CDS: -3.22 Total: 11.18 kcal Atomic # 6 Polarization: -18.40 SS G_CDS: -5.09 Total: -23.49 kcal Atomic # 7 Polarization: -39.08 SS G_CDS: 0.85 Total: -38.23 kcal Atomic # 9 Polarization: -2.85 SS G_CDS: 0.03 Total: -2.81 kcal Atomic # 14 Polarization: 17.11 SS G_CDS: -5.03 Total: 12.08 kcal Total LS contribution 4.43 Total: 4.43 kcal Total: -28.81 -8.03 -36.84 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001243284776.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.838 kcal (2) G-P(sol) polarization free energy of solvation -28.813 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.025 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.028 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.841 kcal (6) G-S(sol) free energy of system = (1) + (5) -1.003 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds