Wall clock time and date at job start Mon Mar 30 2020 01:01:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50693 * 1 3 3 N 1.31262 * 119.79748 * 2 1 4 4 C 1.33046 * 121.72322 * 180.02562 * 3 2 1 5 5 C 1.47895 * 119.45486 * 179.97438 * 4 3 2 6 6 C 1.39564 * 120.12508 * 186.66982 * 5 4 3 7 7 C 1.38520 * 119.80526 * 180.02562 * 6 5 4 8 8 N 1.39820 * 119.97530 * 179.97438 * 7 6 5 9 9 C 1.39092 * 120.05765 * 359.97438 * 7 6 5 10 10 C 1.38194 * 120.25144 * 0.02562 * 9 7 6 11 11 C 1.38251 * 120.19755 * 359.72632 * 10 9 7 12 12 F 1.35099 * 120.03108 * 180.29672 * 11 10 9 13 13 C 1.39938 * 121.09268 * 0.02562 * 4 3 2 14 14 C 1.36581 * 119.46369 * 359.97438 * 13 4 3 15 15 C 1.40945 * 119.80023 * 180.02562 * 2 1 3 16 16 C 1.41039 * 120.55072 * 0.26972 * 15 2 1 17 17 H 1.08000 * 119.99705 * 336.75586 * 16 15 2 18 18 C 1.40006 * 120.00176 * 156.75691 * 16 15 2 19 19 N 1.30805 * 120.00235 * 343.14275 * 18 16 15 20 20 Si 1.86800 * 120.00157 * 163.14511 * 18 16 15 21 21 H 1.48501 * 109.47297 * 59.99788 * 20 18 16 22 22 H 1.48499 * 109.47309 * 179.97438 * 20 18 16 23 23 H 1.48507 * 109.46982 * 299.99671 * 20 18 16 24 24 H 1.09004 * 109.46768 * 269.99584 * 1 2 3 25 25 H 1.09002 * 109.47482 * 29.99522 * 1 2 3 26 26 H 1.08995 * 109.47656 * 149.99782 * 1 2 3 27 27 H 1.08005 * 120.10126 * 359.97438 * 6 5 4 28 28 H 0.97007 * 120.00166 * 0.02562 * 8 7 6 29 29 H 0.96999 * 120.00624 * 179.97438 * 8 7 6 30 30 H 1.07998 * 119.87571 * 180.02562 * 9 7 6 31 31 H 1.08004 * 119.90084 * 180.02562 * 10 9 7 32 32 H 1.07993 * 120.26460 * 179.97438 * 13 4 3 33 33 H 1.07994 * 120.78935 * 179.97438 * 14 13 4 34 34 H 0.96994 * 120.00434 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 7 2.1592 1.1391 0.0000 4 6 3.4889 1.1838 -0.0005 5 6 4.1725 2.4953 -0.0011 6 6 5.5594 2.5622 -0.1418 7 6 6.1929 3.7941 -0.1409 8 7 7.5822 3.8653 -0.2811 9 6 5.4481 4.9604 -0.0006 10 6 4.0747 4.8968 0.1389 11 6 3.4311 3.6733 0.1343 12 9 2.0877 3.6154 0.2649 13 6 4.2515 0.0104 -0.0016 14 6 3.6204 -1.2009 -0.0016 15 6 2.2074 -1.2231 -0.0005 16 6 1.5097 -2.4488 -0.0068 17 1 0.4942 -2.4939 0.3580 18 6 2.1335 -3.6070 -0.4860 19 7 3.2117 -3.5130 -1.2206 20 14 1.4262 -5.2866 -0.0763 21 1 0.0406 -5.3818 -0.6019 22 1 2.2648 -6.3422 -0.6988 23 1 1.4104 -5.4711 1.3972 24 1 -0.3633 -0.0001 1.0277 25 1 -0.3634 0.8900 -0.5138 26 1 -0.3634 -0.8899 -0.5138 27 1 6.1372 1.6562 -0.2503 28 1 8.1021 3.0522 -0.3793 29 1 8.0262 4.7277 -0.2809 30 1 5.9450 5.9193 -0.0007 31 1 3.5018 5.8061 0.2471 32 1 5.3301 0.0623 -0.0024 33 1 4.1878 -2.1198 -0.0029 34 1 3.6442 -4.3153 -1.5523 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001243284776.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:01:56 Heat of formation + Delta-G solvation = -17.964900 kcal Electronic energy + Delta-G solvation = -19828.762561 eV Core-core repulsion = 16639.246517 eV Total energy + Delta-G solvation = -3189.516044 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 272.102 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -49.25727 -40.64225 -39.60392 -36.22216 -35.09151 -33.89355 -32.64838 -31.38651 -29.10057 -28.59352 -26.87180 -24.43707 -23.53962 -21.99116 -21.77773 -19.31422 -18.39846 -17.99692 -17.68415 -17.19815 -16.50078 -16.15867 -15.93409 -15.61730 -15.49621 -14.90405 -14.65496 -14.26368 -13.79650 -13.74885 -13.49555 -13.45429 -13.40465 -13.23780 -12.98092 -12.79481 -12.63809 -12.23153 -11.80362 -11.62143 -11.34052 -11.07397 -10.29290 -10.07945 -9.85471 -9.10783 -8.75030 -8.23689 -6.41400 0.00487 0.56417 0.97053 1.16340 1.39090 1.51189 1.59500 2.15149 2.60147 2.98696 3.03716 3.69338 3.73364 3.74793 3.99807 4.20089 4.36042 4.47200 4.56097 4.66842 4.85620 4.95561 4.97543 5.03445 5.07619 5.13797 5.26896 5.32720 5.42777 5.49976 5.57471 5.76179 5.90491 6.01697 6.09919 6.44968 6.64117 6.66684 6.76133 7.11296 7.75186 8.14148 Molecular weight = 272.10amu Principal moments of inertia in cm(-1) A = 0.028423 B = 0.004901 C = 0.004223 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 984.879555 B = 5712.297318 C = 6628.040334 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 C -0.022 4.022 3 N -0.452 5.452 4 C -0.025 4.025 5 C -0.003 4.003 6 C -0.192 4.192 7 C 0.216 3.784 8 N -0.863 5.863 9 C -0.182 4.182 10 C -0.102 4.102 11 C 0.008 3.992 12 F -0.150 7.150 13 C -0.125 4.125 14 C -0.168 4.168 15 C 0.045 3.955 16 C -0.452 4.452 17 H 0.096 0.904 18 C 0.034 3.966 19 N -0.805 5.805 20 Si 0.991 3.009 21 H -0.254 1.254 22 H -0.266 1.266 23 H -0.258 1.258 24 H 0.061 0.939 25 H 0.054 0.946 26 H 0.071 0.929 27 H 0.131 0.869 28 H 0.405 0.595 29 H 0.411 0.589 30 H 0.162 0.838 31 H 0.152 0.848 32 H 0.126 0.874 33 H 0.123 0.877 34 H 0.296 0.704 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.140 7.685 1.303 10.571 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 C -0.168 4.168 3 N -0.160 5.160 4 C -0.159 4.159 5 C -0.005 4.005 6 C -0.216 4.216 7 C 0.110 3.890 8 N -0.404 5.404 9 C -0.204 4.204 10 C -0.122 4.122 11 C -0.013 4.013 12 F -0.128 7.128 13 C -0.145 4.145 14 C -0.193 4.193 15 C 0.040 3.960 16 C -0.480 4.480 17 H 0.114 0.886 18 C -0.184 4.184 19 N -0.429 5.429 20 Si 0.810 3.190 21 H -0.178 1.178 22 H -0.190 1.190 23 H -0.182 1.182 24 H 0.079 0.921 25 H 0.073 0.927 26 H 0.089 0.911 27 H 0.149 0.851 28 H 0.234 0.766 29 H 0.242 0.758 30 H 0.180 0.820 31 H 0.170 0.830 32 H 0.144 0.856 33 H 0.141 0.859 34 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges 6.804 8.327 1.153 10.815 hybrid contribution 0.320 -1.719 -0.027 1.748 sum 7.124 6.608 1.127 9.782 Atomic orbital electron populations 1.20222 0.88959 1.01543 1.01277 1.21602 0.96982 0.87941 1.10227 1.67023 1.09252 1.30368 1.09348 1.19253 0.89216 0.92155 1.15321 1.18638 0.93400 0.90365 0.98143 1.20502 0.92018 0.97674 1.11436 1.17625 0.85761 0.92555 0.93060 1.42327 1.02318 1.12186 1.83591 1.20680 0.92332 0.97999 1.09435 1.21027 0.95577 0.95507 1.00047 1.17949 0.77452 0.94519 1.11423 1.91426 1.30258 1.97245 1.93908 1.21501 0.99779 0.92783 1.00422 1.21419 0.94917 0.97075 1.05903 1.18804 0.93223 0.94134 0.89861 1.19980 1.01239 0.92226 1.34586 0.88557 1.27007 0.94357 1.05605 0.91452 1.69822 1.17161 1.33940 1.21950 0.85102 0.79493 0.74487 0.79889 1.17794 1.19014 1.18231 0.92064 0.92680 0.91059 0.85127 0.76561 0.75846 0.82002 0.83041 0.85625 0.85948 0.89260 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -2.78 9.58 71.23 0.68 -2.10 16 2 C -0.02 -1.17 6.86 43.31 0.30 -0.87 16 3 N -0.45 -24.43 8.22 -171.00 -1.41 -25.83 16 4 C -0.03 -1.29 6.73 41.93 0.28 -1.00 16 5 C 0.00 -0.14 5.88 -20.01 -0.12 -0.25 16 6 C -0.19 -6.58 9.25 22.66 0.21 -6.37 16 7 C 0.22 5.66 6.75 38.14 0.26 5.92 16 8 N -0.86 -14.61 9.09 -51.40 -0.47 -15.07 16 9 C -0.18 -4.46 9.89 22.46 0.22 -4.23 16 10 C -0.10 -3.10 10.00 22.26 0.22 -2.87 16 11 C 0.01 0.34 7.27 22.66 0.16 0.51 16 12 F -0.15 -6.95 15.31 44.97 0.69 -6.26 16 13 C -0.12 -6.13 9.37 22.29 0.21 -5.92 16 14 C -0.17 -8.93 8.74 22.64 0.20 -8.74 16 15 C 0.04 2.42 5.61 -21.17 -0.12 2.31 16 16 C -0.45 -22.98 8.20 23.39 0.19 -22.78 16 17 H 0.10 4.57 6.77 -2.91 -0.02 4.55 16 18 C 0.03 1.59 5.19 85.27 0.44 2.03 16 19 N -0.81 -39.42 10.83 21.84 0.24 -39.18 16 20 Si 0.99 35.02 29.59 68.60 2.03 37.05 16 21 H -0.25 -8.64 7.11 99.48 0.71 -7.94 16 22 H -0.27 -8.88 7.11 99.48 0.71 -8.18 16 23 H -0.26 -8.98 7.11 99.48 0.71 -8.27 16 24 H 0.06 2.50 8.14 -2.38 -0.02 2.48 16 25 H 0.05 2.34 8.14 -2.39 -0.02 2.32 16 26 H 0.07 3.02 6.71 -2.39 -0.02 3.00 16 27 H 0.13 4.20 6.20 -2.91 -0.02 4.18 16 28 H 0.41 5.91 8.84 -92.70 -0.82 5.09 16 29 H 0.41 4.54 8.84 -92.71 -0.82 3.72 16 30 H 0.16 2.60 8.06 -2.91 -0.02 2.58 16 31 H 0.15 3.69 8.06 -2.91 -0.02 3.67 16 32 H 0.13 5.27 6.20 -2.91 -0.02 5.25 16 33 H 0.12 6.50 6.11 -2.91 -0.02 6.48 16 34 H 0.30 12.94 8.30 -92.71 -0.77 12.17 16 Total: -1.00 -66.33 294.05 3.76 -62.57 By element: Atomic # 1 Polarization: 31.57 SS G_CDS: -0.46 Total: 31.11 kcal Atomic # 6 Polarization: -47.53 SS G_CDS: 3.14 Total: -44.38 kcal Atomic # 7 Polarization: -78.45 SS G_CDS: -1.64 Total: -80.09 kcal Atomic # 9 Polarization: -6.95 SS G_CDS: 0.69 Total: -6.26 kcal Atomic # 14 Polarization: 35.02 SS G_CDS: 2.03 Total: 37.05 kcal Total: -66.33 3.76 -62.57 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001243284776.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.605 kcal (2) G-P(sol) polarization free energy of solvation -66.332 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.726 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.761 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.570 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.965 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds