Wall clock time and date at job start Mon Mar 30 2020 01:01:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50707 * 1 3 3 C 1.38872 * 119.24735 * 2 1 4 4 C 1.36876 * 119.80456 * 179.97438 * 3 2 1 5 5 C 1.41118 * 118.40072 * 0.02562 * 4 3 2 6 6 C 1.40870 * 120.71940 * 179.97438 * 5 4 3 7 7 H 1.08001 * 119.99299 * 150.75592 * 6 5 4 8 8 C 1.40051 * 120.00510 * 330.75562 * 6 5 4 9 9 N 1.30777 * 120.00413 * 163.00820 * 8 6 5 10 10 Si 1.86806 * 119.99899 * 343.01195 * 8 6 5 11 11 H 1.48501 * 109.47065 * 90.38438 * 10 8 6 12 12 H 1.48494 * 109.47111 * 210.38697 * 10 8 6 13 13 H 1.48497 * 109.47040 * 330.38686 * 10 8 6 14 14 C 1.41897 * 118.56011 * 359.97438 * 5 4 3 15 15 C 1.47746 * 119.99826 * 179.97438 * 14 5 4 16 16 C 1.39629 * 120.13005 * 310.20962 * 15 14 5 17 17 C 1.38506 * 119.79283 * 179.72051 * 16 15 14 18 18 N 1.39823 * 119.96707 * 180.27736 * 17 16 15 19 19 C 1.39098 * 120.06509 * 0.55208 * 17 16 15 20 20 C 1.38197 * 120.26815 * 359.72053 * 19 17 16 21 21 C 1.38243 * 120.20420 * 0.02562 * 20 19 17 22 22 F 1.35098 * 120.03558 * 180.02562 * 21 20 19 23 23 N 1.31730 * 119.24224 * 180.27239 * 2 1 3 24 24 H 1.08992 * 109.46972 * 89.99589 * 1 2 3 25 25 H 1.08992 * 109.47141 * 210.00124 * 1 2 3 26 26 H 1.09002 * 109.46702 * 330.00144 * 1 2 3 27 27 H 1.08005 * 120.09459 * 359.97438 * 3 2 1 28 28 H 1.08003 * 120.79727 * 179.97438 * 4 3 2 29 29 H 0.97003 * 120.00342 * 179.97438 * 9 8 6 30 30 H 1.07998 * 120.10552 * 359.97438 * 16 15 14 31 31 H 0.97006 * 119.99964 * 180.27887 * 18 17 16 32 32 H 0.97006 * 120.00177 * 0.27669 * 18 17 16 33 33 H 1.08000 * 119.86503 * 179.70320 * 19 17 16 34 34 H 1.08002 * 119.90222 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1856 1.2117 0.0000 4 6 3.5543 1.2250 0.0005 5 6 4.2375 -0.0098 0.0005 6 6 5.6455 -0.0531 0.0005 7 1 6.1601 -0.8854 0.4575 8 6 6.3781 0.9832 -0.5920 9 7 7.6481 1.1274 -0.3153 10 14 5.5411 2.1594 -1.7775 11 1 4.9989 3.3188 -1.0244 12 1 6.5273 2.6373 -2.7795 13 1 4.4316 1.4570 -2.4710 14 6 3.4755 -1.2067 0.0005 15 6 4.1581 -2.5170 -0.0001 16 6 5.1731 -2.7781 -0.9228 17 6 5.8123 -4.0068 -0.9133 18 7 6.8331 -4.2701 -1.8319 19 6 5.4360 -4.9811 0.0053 20 6 4.4279 -4.7275 0.9160 21 6 3.7860 -3.5032 0.9199 22 9 2.8013 -3.2588 1.8120 23 7 2.1506 -1.1494 -0.0055 24 1 -0.3633 0.0001 -1.0276 25 1 -0.3633 -0.8899 0.5138 26 1 -0.3633 0.8900 0.5138 27 1 1.6348 2.1408 -0.0004 28 1 4.0982 2.1581 0.0001 29 1 8.1556 1.8449 -0.7260 30 1 5.4615 -2.0230 -1.6389 31 1 7.2784 -5.1319 -1.8284 32 1 7.0960 -3.5910 -2.4728 33 1 5.9333 -5.9398 0.0066 34 1 4.1402 -5.4885 1.6264 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001243284788.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:01:59 Heat of formation + Delta-G solvation = -2.735675 kcal Electronic energy + Delta-G solvation = -20413.548101 eV Core-core repulsion = 17224.692445 eV Total energy + Delta-G solvation = -3188.855655 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 272.102 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -47.81553 -39.14529 -38.10061 -34.33015 -33.84834 -32.21513 -31.56238 -29.60943 -27.95768 -27.51548 -24.52133 -22.77846 -22.07306 -20.92632 -20.20362 -17.56689 -16.85445 -16.67637 -16.36406 -15.73839 -15.09365 -14.63225 -14.33888 -14.26301 -13.61741 -13.46859 -13.31178 -13.00872 -12.40481 -12.31534 -12.22579 -12.13578 -12.00103 -11.57107 -11.54454 -11.21095 -10.85662 -10.52365 -10.29135 -9.97913 -9.76165 -9.55944 -8.72107 -8.34036 -8.08018 -7.59350 -7.17264 -6.87473 -4.64056 1.67979 2.04373 2.40759 2.66354 2.94715 3.05218 3.15408 3.77922 4.23976 4.30081 4.41795 5.10055 5.19399 5.32256 5.43257 5.63372 5.82997 5.87473 6.04141 6.09167 6.26493 6.31155 6.36854 6.43094 6.53205 6.58332 6.73004 6.84616 6.86012 7.08165 7.11879 7.35604 7.37446 7.58644 7.74981 7.91817 8.12306 8.13783 8.35748 8.52617 9.37767 9.82396 Molecular weight = 272.10amu Principal moments of inertia in cm(-1) A = 0.013463 B = 0.009782 C = 0.006272 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2079.267402 B = 2861.726663 C = 4463.020224 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 C -0.016 4.016 3 C -0.112 4.112 4 C -0.210 4.210 5 C 0.063 3.937 6 C -0.419 4.419 7 H 0.102 0.898 8 C 0.083 3.917 9 N -0.789 5.789 10 Si 0.910 3.090 11 H -0.266 1.266 12 H -0.287 1.287 13 H -0.246 1.246 14 C 0.033 3.967 15 C 0.033 3.967 16 C -0.136 4.136 17 C 0.197 3.803 18 N -0.882 5.882 19 C -0.186 4.186 20 C -0.118 4.118 21 C 0.051 3.949 22 F -0.141 7.141 23 N -0.429 5.429 24 H 0.051 0.949 25 H 0.058 0.942 26 H 0.053 0.947 27 H 0.104 0.896 28 H 0.113 0.887 29 H 0.289 0.711 30 H 0.135 0.865 31 H 0.392 0.608 32 H 0.397 0.603 33 H 0.119 0.881 34 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.622 -5.182 -2.891 6.152 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.155 4.155 3 C -0.132 4.132 4 C -0.235 4.235 5 C 0.058 3.942 6 C -0.446 4.446 7 H 0.120 0.880 8 C -0.138 4.138 9 N -0.411 5.411 10 Si 0.736 3.264 11 H -0.192 1.192 12 H -0.214 1.214 13 H -0.169 1.169 14 C -0.108 4.108 15 C 0.031 3.969 16 C -0.159 4.159 17 C 0.094 3.906 18 N -0.422 5.422 19 C -0.209 4.209 20 C -0.138 4.138 21 C 0.029 3.971 22 F -0.120 7.120 23 N -0.136 5.136 24 H 0.070 0.930 25 H 0.077 0.923 26 H 0.072 0.928 27 H 0.123 0.877 28 H 0.131 0.869 29 H 0.100 0.900 30 H 0.152 0.848 31 H 0.220 0.780 32 H 0.225 0.775 33 H 0.137 0.863 34 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges -1.909 -5.806 -2.832 6.736 hybrid contribution 0.541 1.513 -0.477 1.677 sum -1.368 -4.293 -3.309 5.590 Atomic orbital electron populations 1.20285 0.91062 1.01182 1.00629 1.20276 0.95154 0.88172 1.11932 1.21190 0.94781 0.97633 0.99607 1.21195 0.94114 0.97576 1.10614 1.18389 0.94392 0.90904 0.90506 1.19499 0.89433 1.05986 1.29721 0.87996 1.26234 0.94790 0.96545 0.96240 1.69655 1.08854 1.28301 1.34314 0.86376 0.79668 0.80402 0.79953 1.19206 1.21430 1.16945 1.19226 0.88273 0.90821 1.12484 1.18152 0.94401 0.91187 0.93175 1.20607 0.98217 0.95593 1.01523 1.17618 0.89340 0.93384 0.90283 1.42345 1.41026 1.19344 1.39454 1.20224 1.02137 0.99220 0.99307 1.20604 0.97332 0.95605 1.00215 1.17594 0.91731 0.94959 0.92800 1.91429 1.59765 1.94853 1.65930 1.66916 1.09368 1.29280 1.08074 0.93046 0.92253 0.92761 0.87747 0.86912 0.90016 0.84753 0.78039 0.77470 0.86329 0.85740 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -1.30 10.15 36.01 0.37 -0.93 16 2 C -0.02 -0.35 6.79 -82.40 -0.56 -0.91 16 3 C -0.11 -2.45 9.64 -39.84 -0.38 -2.84 16 4 C -0.21 -4.99 7.31 -38.98 -0.29 -5.27 16 5 C 0.06 1.59 5.13 -106.41 -0.55 1.05 16 6 C -0.42 -10.64 7.55 -37.91 -0.29 -10.93 16 7 H 0.10 2.75 6.95 -52.49 -0.36 2.39 16 8 C 0.08 2.03 5.44 -17.32 -0.09 1.93 16 9 N -0.79 -19.43 13.93 55.55 0.77 -18.66 16 10 Si 0.91 19.49 24.53 -169.99 -4.17 15.32 16 11 H -0.27 -5.55 6.46 56.52 0.37 -5.19 16 12 H -0.29 -5.88 7.11 56.52 0.40 -5.48 16 13 H -0.25 -5.49 6.99 56.52 0.40 -5.10 16 14 C 0.03 0.81 6.12 -82.24 -0.50 0.31 16 15 C 0.03 0.75 5.07 -104.87 -0.53 0.22 16 16 C -0.14 -2.76 7.88 -38.96 -0.31 -3.06 16 17 C 0.20 3.33 6.75 -83.79 -0.57 2.77 16 18 N -0.88 -11.50 9.09 32.40 0.29 -11.21 16 19 C -0.19 -2.94 9.89 -39.28 -0.39 -3.33 16 20 C -0.12 -2.05 10.00 -39.59 -0.40 -2.45 16 21 C 0.05 1.08 7.25 -38.95 -0.28 0.80 16 22 F -0.14 -3.18 16.46 2.25 0.04 -3.14 16 23 N -0.43 -10.51 9.71 -5.45 -0.05 -10.56 16 24 H 0.05 0.83 8.14 -51.93 -0.42 0.41 16 25 H 0.06 1.03 8.14 -51.93 -0.42 0.61 16 26 H 0.05 0.82 8.07 -51.93 -0.42 0.40 16 27 H 0.10 1.93 8.06 -52.48 -0.42 1.51 16 28 H 0.11 2.59 4.50 -52.48 -0.24 2.36 16 29 H 0.29 6.43 8.30 -40.82 -0.34 6.09 16 30 H 0.13 2.80 7.29 -52.49 -0.38 2.41 16 31 H 0.39 3.99 8.84 -40.82 -0.36 3.63 16 32 H 0.40 4.88 8.84 -40.82 -0.36 4.52 16 33 H 0.12 1.49 8.06 -52.49 -0.42 1.06 16 34 H 0.12 1.81 8.06 -52.49 -0.42 1.39 16 LS Contribution 292.52 15.07 4.41 4.41 Total: -1.00 -28.59 292.52 -6.89 -35.48 By element: Atomic # 1 Polarization: 14.43 SS G_CDS: -3.42 Total: 11.02 kcal Atomic # 6 Polarization: -17.89 SS G_CDS: -4.76 Total: -22.65 kcal Atomic # 7 Polarization: -41.44 SS G_CDS: 1.02 Total: -40.43 kcal Atomic # 9 Polarization: -3.18 SS G_CDS: 0.04 Total: -3.14 kcal Atomic # 14 Polarization: 19.49 SS G_CDS: -4.17 Total: 15.32 kcal Total LS contribution 4.41 Total: 4.41 kcal Total: -28.59 -6.89 -35.48 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001243284788.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.740 kcal (2) G-P(sol) polarization free energy of solvation -28.587 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.153 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.889 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.476 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.736 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds