Wall clock time and date at job start Mon Mar 30 2020 01:01:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50707 * 1 3 3 C 1.38872 * 119.24735 * 2 1 4 4 C 1.36876 * 119.80456 * 179.97438 * 3 2 1 5 5 C 1.41118 * 118.40072 * 0.02562 * 4 3 2 6 6 C 1.40870 * 120.71940 * 179.97438 * 5 4 3 7 7 H 1.08001 * 119.99299 * 150.75592 * 6 5 4 8 8 C 1.40051 * 120.00510 * 330.75562 * 6 5 4 9 9 N 1.30777 * 120.00413 * 163.00820 * 8 6 5 10 10 Si 1.86806 * 119.99899 * 343.01195 * 8 6 5 11 11 H 1.48501 * 109.47065 * 90.38438 * 10 8 6 12 12 H 1.48494 * 109.47111 * 210.38697 * 10 8 6 13 13 H 1.48497 * 109.47040 * 330.38686 * 10 8 6 14 14 C 1.41897 * 118.56011 * 359.97438 * 5 4 3 15 15 C 1.47746 * 119.99826 * 179.97438 * 14 5 4 16 16 C 1.39629 * 120.13005 * 310.20962 * 15 14 5 17 17 C 1.38506 * 119.79283 * 179.72051 * 16 15 14 18 18 N 1.39823 * 119.96707 * 180.27736 * 17 16 15 19 19 C 1.39098 * 120.06509 * 0.55208 * 17 16 15 20 20 C 1.38197 * 120.26815 * 359.72053 * 19 17 16 21 21 C 1.38243 * 120.20420 * 0.02562 * 20 19 17 22 22 F 1.35098 * 120.03558 * 180.02562 * 21 20 19 23 23 N 1.31730 * 119.24224 * 180.27239 * 2 1 3 24 24 H 1.08992 * 109.46972 * 89.99589 * 1 2 3 25 25 H 1.08992 * 109.47141 * 210.00124 * 1 2 3 26 26 H 1.09002 * 109.46702 * 330.00144 * 1 2 3 27 27 H 1.08005 * 120.09459 * 359.97438 * 3 2 1 28 28 H 1.08003 * 120.79727 * 179.97438 * 4 3 2 29 29 H 0.97003 * 120.00342 * 179.97438 * 9 8 6 30 30 H 1.07998 * 120.10552 * 359.97438 * 16 15 14 31 31 H 0.97006 * 119.99964 * 180.27887 * 18 17 16 32 32 H 0.97006 * 120.00177 * 0.27669 * 18 17 16 33 33 H 1.08000 * 119.86503 * 179.70320 * 19 17 16 34 34 H 1.08002 * 119.90222 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1856 1.2117 0.0000 4 6 3.5543 1.2250 0.0005 5 6 4.2375 -0.0098 0.0005 6 6 5.6455 -0.0531 0.0005 7 1 6.1601 -0.8854 0.4575 8 6 6.3781 0.9832 -0.5920 9 7 7.6481 1.1274 -0.3153 10 14 5.5411 2.1594 -1.7775 11 1 4.9989 3.3188 -1.0244 12 1 6.5273 2.6373 -2.7795 13 1 4.4316 1.4570 -2.4710 14 6 3.4755 -1.2067 0.0005 15 6 4.1581 -2.5170 -0.0001 16 6 5.1731 -2.7781 -0.9228 17 6 5.8123 -4.0068 -0.9133 18 7 6.8331 -4.2701 -1.8319 19 6 5.4360 -4.9811 0.0053 20 6 4.4279 -4.7275 0.9160 21 6 3.7860 -3.5032 0.9199 22 9 2.8013 -3.2588 1.8120 23 7 2.1506 -1.1494 -0.0055 24 1 -0.3633 0.0001 -1.0276 25 1 -0.3633 -0.8899 0.5138 26 1 -0.3633 0.8900 0.5138 27 1 1.6348 2.1408 -0.0004 28 1 4.0982 2.1581 0.0001 29 1 8.1556 1.8449 -0.7260 30 1 5.4615 -2.0230 -1.6389 31 1 7.2784 -5.1319 -1.8284 32 1 7.0960 -3.5910 -2.4728 33 1 5.9333 -5.9398 0.0066 34 1 4.1402 -5.4885 1.6264 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001243284788.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:01:58 Heat of formation + Delta-G solvation = -21.070513 kcal Electronic energy + Delta-G solvation = -20414.343159 eV Core-core repulsion = 17224.692445 eV Total energy + Delta-G solvation = -3189.650714 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 272.102 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -49.45336 -40.83054 -39.60780 -36.11865 -35.23718 -33.82886 -33.31560 -31.14309 -29.64867 -28.90417 -26.20064 -24.43458 -23.66276 -22.54944 -21.81445 -19.42110 -18.38154 -18.02921 -17.85561 -17.47471 -16.69751 -16.20181 -16.00663 -15.76026 -15.34435 -15.08400 -14.92487 -14.59125 -13.99197 -13.81001 -13.74071 -13.66836 -13.56838 -13.21914 -13.02037 -12.85854 -12.55401 -12.17648 -11.94301 -11.67469 -11.35438 -11.15744 -10.41474 -10.07394 -9.80998 -9.29468 -8.99529 -8.23486 -6.52031 0.09444 0.56905 0.67097 0.92183 1.20869 1.33723 1.42452 2.03891 2.54614 2.86658 3.05332 3.43309 3.63851 3.71884 4.03082 4.16423 4.22173 4.34453 4.49154 4.59110 4.70865 4.77885 4.92972 4.95507 5.02257 5.05982 5.20574 5.28535 5.39983 5.44318 5.50892 5.61230 5.74248 5.96272 6.02343 6.21443 6.54198 6.63718 6.64372 7.11713 7.58357 8.05512 Molecular weight = 272.10amu Principal moments of inertia in cm(-1) A = 0.013463 B = 0.009782 C = 0.006272 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2079.267402 B = 2861.726663 C = 4463.020224 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 C -0.020 4.020 3 C -0.117 4.117 4 C -0.223 4.223 5 C 0.042 3.958 6 C -0.438 4.438 7 H 0.070 0.930 8 C 0.057 3.943 9 N -0.822 5.822 10 Si 0.958 3.042 11 H -0.253 1.253 12 H -0.269 1.269 13 H -0.264 1.264 14 C 0.017 3.983 15 C 0.001 3.999 16 C -0.156 4.156 17 C 0.205 3.795 18 N -0.864 5.864 19 C -0.173 4.173 20 C -0.106 4.106 21 C 0.014 3.986 22 F -0.158 7.158 23 N -0.454 5.454 24 H 0.069 0.931 25 H 0.057 0.943 26 H 0.084 0.916 27 H 0.145 0.855 28 H 0.119 0.881 29 H 0.299 0.701 30 H 0.115 0.885 31 H 0.411 0.589 32 H 0.402 0.598 33 H 0.165 0.835 34 H 0.157 0.843 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.236 -5.827 -3.549 7.180 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C -0.160 4.160 3 C -0.136 4.136 4 C -0.248 4.248 5 C 0.037 3.963 6 C -0.467 4.467 7 H 0.088 0.912 8 C -0.162 4.162 9 N -0.446 5.446 10 Si 0.782 3.218 11 H -0.178 1.178 12 H -0.195 1.195 13 H -0.188 1.188 14 C -0.123 4.123 15 C -0.002 4.002 16 C -0.180 4.180 17 C 0.100 3.900 18 N -0.405 5.405 19 C -0.195 4.195 20 C -0.125 4.125 21 C -0.008 4.008 22 F -0.137 7.137 23 N -0.163 5.163 24 H 0.087 0.913 25 H 0.076 0.924 26 H 0.103 0.897 27 H 0.163 0.837 28 H 0.136 0.864 29 H 0.110 0.890 30 H 0.133 0.867 31 H 0.242 0.758 32 H 0.231 0.769 33 H 0.183 0.817 34 H 0.175 0.825 Dipole moment (debyes) X Y Z Total from point charges -2.479 -6.473 -3.504 7.767 hybrid contribution 0.665 1.574 -0.276 1.730 sum -1.815 -4.900 -3.781 6.449 Atomic orbital electron populations 1.20384 0.87566 1.02637 1.02206 1.21227 0.97634 0.87894 1.09232 1.21607 0.94245 0.99270 0.98494 1.21418 0.95297 0.97249 1.10859 1.18600 0.94482 0.91928 0.91252 1.19268 0.89763 1.05980 1.31648 0.91189 1.26735 0.95137 0.97384 0.96905 1.69658 1.09700 1.29565 1.35648 0.85643 0.78659 0.78955 0.78578 1.17827 1.19548 1.18836 1.19709 0.88732 0.92011 1.11812 1.18330 0.95766 0.91135 0.94954 1.20496 0.98973 0.96882 1.01665 1.17728 0.89240 0.92352 0.90728 1.42309 1.39596 1.20408 1.38190 1.20704 1.00994 1.00404 0.97418 1.20986 0.96437 0.94529 1.00521 1.17938 0.92912 0.96487 0.93447 1.91367 1.60641 1.95151 1.66497 1.67056 1.09385 1.30531 1.09304 0.91265 0.92438 0.89692 0.83747 0.86367 0.89017 0.86652 0.75820 0.76942 0.81723 0.82499 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 19. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -2.31 10.15 71.24 0.72 -1.58 16 2 C -0.02 -0.87 6.79 42.73 0.29 -0.58 16 3 C -0.12 -4.94 9.64 22.10 0.21 -4.73 16 4 C -0.22 -10.64 7.31 22.66 0.17 -10.48 16 5 C 0.04 2.21 5.13 -21.02 -0.11 2.10 16 6 C -0.44 -23.49 7.55 23.35 0.18 -23.31 16 7 H 0.07 4.08 6.95 -2.91 -0.02 4.06 16 8 C 0.06 2.84 5.44 85.29 0.46 3.30 16 9 N -0.82 -41.59 13.93 21.85 0.30 -41.28 16 10 Si 0.96 40.33 24.53 68.60 1.68 42.01 16 11 H -0.25 -10.03 6.46 99.48 0.64 -9.39 16 12 H -0.27 -10.44 7.11 99.48 0.71 -9.74 16 13 H -0.26 -11.78 6.99 99.48 0.70 -11.08 16 14 C 0.02 0.88 6.12 42.45 0.26 1.13 16 15 C 0.00 0.03 5.07 -20.02 -0.10 -0.08 16 16 C -0.16 -6.57 7.88 22.67 0.18 -6.39 16 17 C 0.21 6.73 6.75 38.14 0.26 6.99 16 18 N -0.86 -20.86 9.09 -51.41 -0.47 -21.33 16 19 C -0.17 -4.97 9.89 22.47 0.22 -4.75 16 20 C -0.11 -3.49 10.00 22.26 0.22 -3.27 16 21 C 0.01 0.60 7.25 22.68 0.16 0.76 16 22 F -0.16 -7.32 16.46 44.97 0.74 -6.58 16 23 N -0.45 -22.68 9.71 -171.16 -1.66 -24.34 16 24 H 0.07 2.04 8.14 -2.39 -0.02 2.02 16 25 H 0.06 1.90 8.14 -2.39 -0.02 1.88 16 26 H 0.08 2.25 8.07 -2.39 -0.02 2.23 16 27 H 0.14 4.85 8.06 -2.91 -0.02 4.83 16 28 H 0.12 5.40 4.50 -2.91 -0.01 5.38 16 29 H 0.30 13.48 8.30 -92.71 -0.77 12.72 16 30 H 0.12 5.15 7.29 -2.91 -0.02 5.13 16 31 H 0.41 6.98 8.84 -92.70 -0.82 6.17 16 32 H 0.40 9.43 8.84 -92.70 -0.82 8.61 16 33 H 0.17 3.25 8.06 -2.91 -0.02 3.23 16 34 H 0.16 4.09 8.06 -2.91 -0.02 4.07 16 Total: -1.00 -65.49 292.52 3.18 -62.31 By element: Atomic # 1 Polarization: 30.66 SS G_CDS: -0.55 Total: 30.11 kcal Atomic # 6 Polarization: -44.02 SS G_CDS: 3.13 Total: -40.89 kcal Atomic # 7 Polarization: -85.13 SS G_CDS: -1.83 Total: -86.96 kcal Atomic # 9 Polarization: -7.32 SS G_CDS: 0.74 Total: -6.58 kcal Atomic # 14 Polarization: 40.33 SS G_CDS: 1.68 Total: 42.01 kcal Total: -65.49 3.18 -62.31 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001243284788.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.239 kcal (2) G-P(sol) polarization free energy of solvation -65.488 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.250 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.179 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.309 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.071 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds