Wall clock time and date at job start Mon Mar 30 2020 01:02:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.38870 * 119.24444 * 2 1 4 4 C 1.36890 * 119.80450 * 179.97438 * 3 2 1 5 5 C 1.41122 * 118.39333 * 359.72880 * 4 3 2 6 6 C 1.40875 * 120.71937 * 180.26318 * 5 4 3 7 7 H 1.08001 * 120.00218 * 151.38077 * 6 5 4 8 8 C 1.40060 * 120.00069 * 331.38736 * 6 5 4 9 9 N 1.30780 * 119.99779 * 348.68038 * 8 6 5 10 10 Si 1.86803 * 120.00202 * 168.69089 * 8 6 5 11 11 H 1.48497 * 109.46981 * 359.97438 * 10 8 6 12 12 H 1.48490 * 109.47132 * 119.99637 * 10 8 6 13 13 H 1.48497 * 109.46836 * 239.99846 * 10 8 6 14 14 C 1.41893 * 118.56053 * 0.50694 * 5 4 3 15 15 C 1.47769 * 119.99248 * 179.75709 * 14 5 4 16 16 C 1.39646 * 120.53678 * 316.30639 * 15 14 5 17 17 N 1.31679 * 120.57807 * 179.97438 * 16 15 14 18 18 C 1.32164 * 121.84691 * 0.02672 * 17 16 15 19 19 F 1.35095 * 119.48059 * 179.97438 * 18 17 16 20 20 C 1.38713 * 121.03364 * 359.97438 * 18 17 16 21 21 C 1.50701 * 120.34961 * 180.02562 * 20 18 17 22 22 C 1.38191 * 119.29699 * 0.28966 * 20 18 17 23 23 N 1.31743 * 119.24580 * 179.97438 * 2 1 3 24 24 H 1.08994 * 109.47210 * 270.02283 * 1 2 3 25 25 H 1.09002 * 109.46959 * 30.02574 * 1 2 3 26 26 H 1.08999 * 109.46896 * 150.01799 * 1 2 3 27 27 H 1.08000 * 120.10009 * 0.02562 * 3 2 1 28 28 H 1.07998 * 120.80259 * 179.97438 * 4 3 2 29 29 H 0.97006 * 120.00078 * 179.97438 * 9 8 6 30 30 H 1.08004 * 119.71270 * 0.02562 * 16 15 14 31 31 H 1.09000 * 109.47153 * 90.00104 * 21 20 18 32 32 H 1.08998 * 109.47360 * 329.99688 * 21 20 18 33 33 H 1.09002 * 109.47092 * 209.99270 * 21 20 18 34 34 H 1.08008 * 120.84019 * 179.73040 * 22 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1854 1.2117 0.0000 4 6 3.5543 1.2251 0.0005 5 6 4.2374 -0.0097 0.0069 6 6 5.6455 -0.0531 0.0133 7 1 6.1580 -0.8892 0.4659 8 6 6.3809 0.9880 -0.5671 9 7 5.7767 1.8833 -1.3045 10 14 8.2247 1.0977 -0.2882 11 1 8.6623 -0.0272 0.5768 12 1 8.9282 1.0214 -1.5937 13 1 8.5492 2.3864 0.3744 14 6 3.4754 -1.2066 0.0015 15 6 4.1582 -2.5171 0.0025 16 6 5.2611 -2.7431 -0.8236 17 7 5.8706 -3.9104 -0.8230 18 6 5.4701 -4.9058 -0.0512 19 9 6.1304 -6.0837 -0.0893 20 6 4.3824 -4.7598 0.7972 21 6 3.9393 -5.9049 1.6711 22 6 3.7061 -3.5551 0.8286 23 7 2.1506 -1.1495 0.0005 24 1 -0.3633 0.0004 1.0276 25 1 -0.3633 0.8898 -0.5142 26 1 -0.3633 -0.8901 -0.5136 27 1 1.6348 2.1408 0.0004 28 1 4.0982 2.1581 0.0001 29 1 6.2859 2.6046 -1.7062 30 1 5.6180 -1.9534 -1.4682 31 1 4.4586 -5.8536 2.6281 32 1 4.1748 -6.8490 1.1800 33 1 2.8640 -5.8401 1.8373 34 1 2.8534 -3.4156 1.4766 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001243397201.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:02:09 Heat of formation + Delta-G solvation = -12.246593 kcal Electronic energy + Delta-G solvation = -20048.594683 eV Core-core repulsion = 16859.326603 eV Total energy + Delta-G solvation = -3189.268080 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 272.102 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -49.99070 -41.26148 -40.00467 -36.21809 -34.77262 -34.28886 -32.73792 -31.13091 -29.63324 -28.13342 -26.33765 -24.78470 -23.96345 -22.58336 -21.77332 -19.36123 -18.92388 -18.24409 -17.36468 -17.12076 -17.02908 -16.14634 -15.70024 -15.26488 -14.98074 -14.60766 -14.55495 -14.40110 -14.15641 -13.94960 -13.71265 -13.47340 -13.37004 -13.16423 -13.01671 -12.92497 -12.64709 -12.60994 -12.22070 -11.70259 -11.24157 -10.86445 -10.66669 -10.26306 -9.98558 -9.74607 -9.16226 -8.71931 -6.45162 -0.22477 0.16897 0.78664 1.07446 1.36724 1.45573 1.49230 2.14059 2.59613 2.61904 2.69622 3.44616 3.57571 3.73409 3.87933 4.05237 4.10831 4.39168 4.58504 4.63396 4.65221 4.76867 4.83018 4.91357 4.99862 5.02534 5.06798 5.10459 5.18462 5.27241 5.33339 5.37000 5.68292 5.78942 5.91379 6.02455 6.44223 6.67685 6.68907 6.75557 7.65784 8.18365 Molecular weight = 272.10amu Principal moments of inertia in cm(-1) A = 0.012677 B = 0.008325 C = 0.005273 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2208.252999 B = 3362.581167 C = 5309.022897 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 C -0.008 4.008 3 C -0.144 4.144 4 C -0.140 4.140 5 C 0.059 3.941 6 C -0.461 4.461 7 H 0.079 0.921 8 C 0.044 3.956 9 N -0.811 5.811 10 Si 0.971 3.029 11 H -0.264 1.264 12 H -0.265 1.265 13 H -0.259 1.259 14 C 0.000 4.000 15 C -0.043 4.043 16 C 0.138 3.862 17 N -0.531 5.531 18 C 0.260 3.740 19 F -0.118 7.118 20 C -0.147 4.147 21 C -0.102 4.102 22 C -0.047 4.047 23 N -0.461 5.461 24 H 0.070 0.930 25 H 0.076 0.924 26 H 0.059 0.941 27 H 0.130 0.870 28 H 0.120 0.880 29 H 0.294 0.706 30 H 0.161 0.839 31 H 0.089 0.911 32 H 0.079 0.921 33 H 0.091 0.909 34 H 0.153 0.847 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.192 -5.120 4.258 7.385 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C -0.151 4.151 3 C -0.164 4.164 4 C -0.167 4.167 5 C 0.054 3.946 6 C -0.490 4.490 7 H 0.097 0.903 8 C -0.174 4.174 9 N -0.436 5.436 10 Si 0.792 3.208 11 H -0.188 1.188 12 H -0.189 1.189 13 H -0.183 1.183 14 C -0.137 4.137 15 C -0.046 4.046 16 C -0.020 4.020 17 N -0.245 5.245 18 C 0.107 3.893 19 F -0.097 7.097 20 C -0.151 4.151 21 C -0.159 4.159 22 C -0.073 4.073 23 N -0.170 5.170 24 H 0.089 0.911 25 H 0.095 0.905 26 H 0.078 0.922 27 H 0.148 0.852 28 H 0.137 0.863 29 H 0.105 0.895 30 H 0.178 0.822 31 H 0.107 0.893 32 H 0.098 0.902 33 H 0.110 0.890 34 H 0.171 0.829 Dipole moment (debyes) X Y Z Total from point charges -2.877 -5.869 3.562 7.444 hybrid contribution 0.983 1.235 0.209 1.592 sum -1.894 -4.634 3.771 6.267 Atomic orbital electron populations 1.20370 0.87855 1.02403 1.02173 1.21106 0.97296 0.87945 1.08779 1.21624 0.94851 0.98791 1.01133 1.21506 0.93724 0.98374 1.03049 1.18621 0.94731 0.91558 0.89650 1.19660 0.91124 1.05784 1.32384 0.90335 1.26622 1.05315 0.93367 0.92046 1.69757 1.40434 1.11512 1.21908 0.85284 0.76518 0.79530 0.79427 1.18811 1.18930 1.18346 1.19426 0.88886 0.91136 1.14244 1.19480 0.95524 0.93261 0.96368 1.22646 0.91641 0.91339 0.96396 1.66894 1.32657 1.01290 1.23671 1.18263 0.91979 0.82300 0.96729 1.91535 1.80375 1.42408 1.95364 1.20789 0.95609 0.98681 0.99971 1.20761 1.03185 0.93730 0.98220 1.21646 0.98687 0.90330 0.96588 1.66925 1.09120 1.30230 1.10716 0.91136 0.90475 0.92186 0.85199 0.86255 0.89470 0.82215 0.89280 0.90207 0.89035 0.82904 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -2.17 10.15 71.24 0.72 -1.45 16 2 C -0.01 -0.35 6.79 42.72 0.29 -0.06 16 3 C -0.14 -6.10 9.64 22.10 0.21 -5.89 16 4 C -0.14 -6.77 8.72 22.66 0.20 -6.57 16 5 C 0.06 2.95 5.55 -21.02 -0.12 2.83 16 6 C -0.46 -22.69 6.72 23.36 0.16 -22.53 16 7 H 0.08 3.89 6.50 -2.91 -0.02 3.87 16 8 C 0.04 2.03 5.26 85.29 0.45 2.48 16 9 N -0.81 -38.59 10.90 21.85 0.24 -38.35 16 10 Si 0.97 36.39 29.58 68.60 2.03 38.41 16 11 H -0.26 -10.12 7.11 99.48 0.71 -9.41 16 12 H -0.26 -9.65 7.11 99.48 0.71 -8.94 16 13 H -0.26 -9.20 7.11 99.48 0.71 -8.49 16 14 C 0.00 0.01 6.45 42.46 0.27 0.29 16 15 C -0.04 -1.87 5.27 -19.95 -0.11 -1.97 16 16 C 0.14 6.01 9.04 85.06 0.77 6.78 16 17 N -0.53 -22.27 10.36 -195.65 -2.03 -24.29 16 18 C 0.26 9.57 8.36 84.76 0.71 10.28 16 19 F -0.12 -3.97 16.49 44.97 0.74 -3.23 16 20 C -0.15 -4.72 5.90 -19.76 -0.12 -4.83 16 21 C -0.10 -2.23 9.85 71.24 0.70 -1.53 16 22 C -0.05 -1.68 9.49 22.72 0.22 -1.47 16 23 N -0.46 -20.96 10.06 -171.15 -1.72 -22.68 16 24 H 0.07 1.92 8.14 -2.39 -0.02 1.90 16 25 H 0.08 2.02 8.07 -2.39 -0.02 2.00 16 26 H 0.06 1.81 8.14 -2.39 -0.02 1.79 16 27 H 0.13 4.61 8.06 -2.91 -0.02 4.58 16 28 H 0.12 5.89 6.33 -2.91 -0.02 5.87 16 29 H 0.29 12.60 8.30 -92.70 -0.77 11.84 16 30 H 0.16 7.38 6.75 -2.91 -0.02 7.36 16 31 H 0.09 1.70 8.14 -2.39 -0.02 1.68 16 32 H 0.08 1.60 7.65 -2.39 -0.02 1.58 16 33 H 0.09 1.68 8.09 -2.39 -0.02 1.66 16 34 H 0.15 5.03 8.06 -2.91 -0.02 5.01 16 Total: -1.00 -56.24 298.13 4.75 -51.48 By element: Atomic # 1 Polarization: 21.17 SS G_CDS: 1.13 Total: 22.30 kcal Atomic # 6 Polarization: -28.01 SS G_CDS: 4.36 Total: -23.65 kcal Atomic # 7 Polarization: -81.82 SS G_CDS: -3.51 Total: -85.33 kcal Atomic # 9 Polarization: -3.97 SS G_CDS: 0.74 Total: -3.23 kcal Atomic # 14 Polarization: 36.39 SS G_CDS: 2.03 Total: 38.41 kcal Total: -56.24 4.75 -51.48 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001243397201.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.237 kcal (2) G-P(sol) polarization free energy of solvation -56.237 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.000 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.754 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -51.483 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.247 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds