Wall clock time and date at job start Mon Mar 30 2020 01:02:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 N 1.31270 * 119.79556 * 2 1 4 4 C 1.33034 * 121.72272 * 180.02562 * 3 2 1 5 5 C 1.47908 * 119.45634 * 179.97438 * 4 3 2 6 6 C 1.39678 * 120.09499 * 185.02422 * 5 4 3 7 7 C 1.37930 * 120.01880 * 179.97438 * 6 5 4 8 8 C 1.38481 * 120.19992 * 359.97438 * 7 6 5 9 9 F 1.35094 * 119.91269 * 179.97438 * 8 7 6 10 10 C 1.39271 * 120.17459 * 0.02562 * 8 7 6 11 11 N 1.39846 * 120.01121 * 179.97438 * 10 8 7 12 12 C 1.38498 * 119.98144 * 359.73466 * 10 8 7 13 13 C 1.39932 * 121.09443 * 0.02562 * 4 3 2 14 14 C 1.36587 * 119.46682 * 0.23238 * 13 4 3 15 15 C 1.40946 * 119.80525 * 179.97438 * 2 1 3 16 16 C 1.41045 * 120.54451 * 0.02562 * 15 2 1 17 17 H 1.07999 * 120.00276 * 24.95479 * 16 15 2 18 18 C 1.40014 * 119.99719 * 204.94414 * 16 15 2 19 19 N 1.30796 * 120.00110 * 14.39014 * 18 16 15 20 20 Si 1.86795 * 119.99973 * 194.38995 * 18 16 15 21 21 H 1.48499 * 109.47341 * 90.00105 * 20 18 16 22 22 H 1.48496 * 109.47392 * 210.00279 * 20 18 16 23 23 H 1.48500 * 109.47328 * 330.00373 * 20 18 16 24 24 H 1.08993 * 109.47198 * 90.00684 * 1 2 3 25 25 H 1.09008 * 109.46709 * 210.00172 * 1 2 3 26 26 H 1.09001 * 109.47201 * 330.00017 * 1 2 3 27 27 H 1.08009 * 119.98732 * 359.94921 * 6 5 4 28 28 H 1.08004 * 119.90433 * 180.02562 * 7 6 5 29 29 H 0.97005 * 119.99616 * 359.97438 * 11 10 8 30 30 H 0.96998 * 120.00552 * 179.97438 * 11 10 8 31 31 H 1.08003 * 120.09556 * 180.25756 * 12 10 8 32 32 H 1.08004 * 120.26644 * 179.97438 * 13 4 3 33 33 H 1.07995 * 120.78873 * 179.74831 * 14 13 4 34 34 H 0.96995 * 120.00559 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.1593 1.1392 0.0000 4 6 3.4888 1.1839 -0.0005 5 6 4.1725 2.4955 -0.0011 6 6 5.5637 2.5602 -0.1074 7 6 6.1995 3.7842 -0.1083 8 6 5.4626 4.9520 -0.0045 9 9 6.0914 6.1477 -0.0054 10 6 4.0751 4.8971 0.1020 11 7 3.3343 6.0786 0.2072 12 6 3.4286 3.6722 0.0986 13 6 4.2514 0.0106 -0.0016 14 6 3.6205 -1.2008 -0.0070 15 6 2.2075 -1.2230 0.0005 16 6 1.5098 -2.4488 0.0006 17 1 0.5059 -2.4987 -0.3944 18 6 2.1188 -3.6009 0.5124 19 7 3.2022 -3.5005 1.2383 20 14 1.3840 -5.2815 0.1587 21 1 1.9729 -5.8262 -1.0909 22 1 1.6817 -6.1994 1.2874 23 1 -0.0869 -5.1549 -0.0015 24 1 -0.3633 -0.0001 -1.0276 25 1 -0.3633 -0.8901 0.5139 26 1 -0.3633 0.8900 0.5138 27 1 6.1417 1.6514 -0.1886 28 1 7.2753 3.8320 -0.1911 29 1 3.7870 6.9365 0.2064 30 1 2.3679 6.0402 0.2810 31 1 2.3524 3.6277 0.1769 32 1 5.3302 0.0625 -0.0024 33 1 4.1880 -2.1196 -0.0120 34 1 3.6240 -4.2986 1.5932 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001243450822.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:02:00 Heat of formation + Delta-G solvation = -8.962555 kcal Electronic energy + Delta-G solvation = -19497.465935 eV Core-core repulsion = 16308.340262 eV Total energy + Delta-G solvation = -3189.125673 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 272.102 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -48.39055 -39.11584 -37.97839 -34.65323 -34.04328 -32.01176 -31.02055 -29.43925 -28.30366 -26.96731 -25.05606 -22.63051 -22.25556 -20.70436 -19.96505 -17.54114 -17.37673 -16.72802 -16.33230 -15.64829 -15.19416 -14.87060 -14.59191 -14.47104 -13.62027 -13.31665 -13.25154 -12.96325 -12.54373 -12.37744 -12.18198 -11.77833 -11.63432 -11.47809 -11.35399 -11.05411 -10.98258 -10.73562 -10.62790 -10.28547 -9.83919 -9.56972 -8.55572 -8.29135 -8.12975 -7.46360 -7.13724 -6.96856 -4.60519 1.44290 1.91069 2.60552 2.88681 2.92472 2.94862 3.11034 3.69669 4.02122 4.13631 4.59587 4.74302 5.18267 5.30216 5.51729 5.66247 5.82201 6.00066 6.16853 6.23138 6.30496 6.48259 6.58244 6.61513 6.66886 6.71676 6.78893 6.85597 6.98801 7.13924 7.21268 7.30614 7.61664 7.70740 7.74643 7.85779 7.91482 8.26451 8.46400 8.56945 9.52336 9.83929 Molecular weight = 272.10amu Principal moments of inertia in cm(-1) A = 0.038045 B = 0.004091 C = 0.003737 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 735.786222 B = 6841.846109 C = 7491.656119 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 C 0.008 3.992 3 N -0.444 5.444 4 C -0.007 4.007 5 C 0.060 3.940 6 C -0.162 4.162 7 C -0.102 4.102 8 C -0.021 4.021 9 F -0.156 7.156 10 C 0.189 3.811 11 N -0.880 5.880 12 C -0.167 4.167 13 C -0.121 4.121 14 C -0.143 4.143 15 C 0.074 3.926 16 C -0.428 4.428 17 H 0.090 0.910 18 C 0.070 3.930 19 N -0.776 5.776 20 Si 0.917 3.083 21 H -0.265 1.265 22 H -0.275 1.275 23 H -0.258 1.258 24 H 0.048 0.952 25 H 0.067 0.933 26 H 0.049 0.951 27 H 0.127 0.873 28 H 0.126 0.874 29 H 0.396 0.604 30 H 0.399 0.601 31 H 0.136 0.864 32 H 0.103 0.897 33 H 0.129 0.871 34 H 0.287 0.713 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.140 6.684 -1.324 6.908 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C -0.138 4.138 3 N -0.152 5.152 4 C -0.140 4.140 5 C 0.058 3.942 6 C -0.183 4.183 7 C -0.121 4.121 8 C -0.045 4.045 9 F -0.136 7.136 10 C 0.085 3.915 11 N -0.421 5.421 12 C -0.190 4.190 13 C -0.142 4.142 14 C -0.168 4.168 15 C 0.069 3.931 16 C -0.456 4.456 17 H 0.108 0.892 18 C -0.150 4.150 19 N -0.400 5.400 20 Si 0.740 3.260 21 H -0.190 1.190 22 H -0.200 1.200 23 H -0.182 1.182 24 H 0.067 0.933 25 H 0.085 0.915 26 H 0.068 0.932 27 H 0.145 0.855 28 H 0.144 0.856 29 H 0.223 0.777 30 H 0.228 0.772 31 H 0.153 0.847 32 H 0.121 0.879 33 H 0.147 0.853 34 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges 0.919 7.304 -1.174 7.454 hybrid contribution 0.306 -1.096 0.010 1.138 sum 1.225 6.208 -1.164 6.434 Atomic orbital electron populations 1.20260 0.91004 1.01251 1.00408 1.21000 0.95138 0.87999 1.09697 1.66722 1.08654 1.30396 1.09434 1.18681 0.89064 0.90513 1.15761 1.18477 0.91760 0.91669 0.92301 1.20844 0.93779 0.96790 1.06842 1.20672 0.99513 0.90947 1.00968 1.17100 0.88801 0.80895 1.17656 1.91353 1.82486 1.44273 1.95440 1.17666 0.89080 0.87994 0.96793 1.42272 1.09014 1.05182 1.85597 1.20591 1.00523 0.88918 1.08992 1.21324 0.98731 0.93375 1.00737 1.21367 0.94696 0.96762 1.03989 1.18446 0.92615 0.93170 0.88821 1.19743 1.01500 0.91901 1.32488 0.89237 1.26112 0.94324 1.02095 0.92502 1.69768 1.16232 1.32417 1.21546 0.86148 0.80696 0.79954 0.79166 1.18953 1.19977 1.18182 0.93288 0.91460 0.93167 0.85476 0.85600 0.77654 0.77212 0.84651 0.87876 0.85316 0.90160 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -1.43 9.58 36.00 0.34 -1.09 16 2 C 0.01 0.19 6.86 -81.81 -0.56 -0.37 16 3 N -0.44 -10.57 9.31 -5.40 -0.05 -10.62 16 4 C -0.01 -0.15 6.73 -82.75 -0.56 -0.71 16 5 C 0.06 1.20 5.87 -104.90 -0.62 0.58 16 6 C -0.16 -2.83 9.41 -39.16 -0.37 -3.20 16 7 C -0.10 -1.62 10.00 -39.60 -0.40 -2.01 16 8 C -0.02 -0.34 7.32 -39.11 -0.29 -0.63 16 9 F -0.16 -2.46 16.63 2.25 0.04 -2.42 16 10 C 0.19 3.09 6.76 -83.72 -0.57 2.52 16 11 N -0.88 -11.19 9.09 32.44 0.29 -10.89 16 12 C -0.17 -3.08 9.41 -38.99 -0.37 -3.44 16 13 C -0.12 -2.76 9.37 -39.54 -0.37 -3.13 16 14 C -0.14 -3.52 8.73 -39.01 -0.34 -3.86 16 15 C 0.07 1.86 5.59 -106.64 -0.60 1.26 16 16 C -0.43 -10.22 8.16 -37.85 -0.31 -10.53 16 17 H 0.09 2.01 6.84 -52.49 -0.36 1.65 16 18 C 0.07 1.59 5.23 -17.33 -0.09 1.50 16 19 N -0.78 -18.28 10.84 55.55 0.60 -17.68 16 20 Si 0.92 16.84 29.58 -169.99 -5.03 11.82 16 21 H -0.26 -4.84 7.11 56.52 0.40 -4.44 16 22 H -0.27 -4.98 7.11 56.52 0.40 -4.58 16 23 H -0.26 -4.67 7.11 56.52 0.40 -4.27 16 24 H 0.05 0.90 8.14 -51.93 -0.42 0.48 16 25 H 0.07 1.31 6.76 -51.92 -0.35 0.96 16 26 H 0.05 0.93 8.14 -51.93 -0.42 0.51 16 27 H 0.13 2.05 6.17 -52.48 -0.32 1.73 16 28 H 0.13 1.67 8.06 -52.48 -0.42 1.24 16 29 H 0.40 4.39 8.31 -40.82 -0.34 4.05 16 30 H 0.40 4.33 8.84 -40.82 -0.36 3.97 16 31 H 0.14 2.53 7.53 -52.48 -0.40 2.13 16 32 H 0.10 2.05 6.17 -52.48 -0.32 1.72 16 33 H 0.13 3.18 6.18 -52.49 -0.32 2.86 16 34 H 0.29 6.11 8.30 -40.82 -0.34 5.77 16 LS Contribution 295.20 15.07 4.45 4.45 Total: -1.00 -26.71 295.20 -7.95 -34.66 By element: Atomic # 1 Polarization: 16.97 SS G_CDS: -3.18 Total: 13.79 kcal Atomic # 6 Polarization: -18.03 SS G_CDS: -5.08 Total: -23.11 kcal Atomic # 7 Polarization: -40.04 SS G_CDS: 0.85 Total: -39.19 kcal Atomic # 9 Polarization: -2.46 SS G_CDS: 0.04 Total: -2.42 kcal Atomic # 14 Polarization: 16.84 SS G_CDS: -5.03 Total: 11.82 kcal Total LS contribution 4.45 Total: 4.45 kcal Total: -26.71 -7.95 -34.66 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001243450822.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.702 kcal (2) G-P(sol) polarization free energy of solvation -26.710 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -1.008 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.954 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.665 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.963 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds