Wall clock time and date at job start Mon Mar 30 2020 01:02:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 N 1.31270 * 119.79556 * 2 1 4 4 C 1.33034 * 121.72272 * 180.02562 * 3 2 1 5 5 C 1.47908 * 119.45634 * 179.97438 * 4 3 2 6 6 C 1.39678 * 120.09499 * 185.02422 * 5 4 3 7 7 C 1.37930 * 120.01880 * 179.97438 * 6 5 4 8 8 C 1.38481 * 120.19992 * 359.97438 * 7 6 5 9 9 F 1.35094 * 119.91269 * 179.97438 * 8 7 6 10 10 C 1.39271 * 120.17459 * 0.02562 * 8 7 6 11 11 N 1.39846 * 120.01121 * 179.97438 * 10 8 7 12 12 C 1.38498 * 119.98144 * 359.73466 * 10 8 7 13 13 C 1.39932 * 121.09443 * 0.02562 * 4 3 2 14 14 C 1.36587 * 119.46682 * 0.23238 * 13 4 3 15 15 C 1.40946 * 119.80525 * 179.97438 * 2 1 3 16 16 C 1.41045 * 120.54451 * 0.02562 * 15 2 1 17 17 H 1.07999 * 120.00276 * 24.95479 * 16 15 2 18 18 C 1.40014 * 119.99719 * 204.94414 * 16 15 2 19 19 N 1.30796 * 120.00110 * 14.39014 * 18 16 15 20 20 Si 1.86795 * 119.99973 * 194.38995 * 18 16 15 21 21 H 1.48499 * 109.47341 * 90.00105 * 20 18 16 22 22 H 1.48496 * 109.47392 * 210.00279 * 20 18 16 23 23 H 1.48500 * 109.47328 * 330.00373 * 20 18 16 24 24 H 1.08993 * 109.47198 * 90.00684 * 1 2 3 25 25 H 1.09008 * 109.46709 * 210.00172 * 1 2 3 26 26 H 1.09001 * 109.47201 * 330.00017 * 1 2 3 27 27 H 1.08009 * 119.98732 * 359.94921 * 6 5 4 28 28 H 1.08004 * 119.90433 * 180.02562 * 7 6 5 29 29 H 0.97005 * 119.99616 * 359.97438 * 11 10 8 30 30 H 0.96998 * 120.00552 * 179.97438 * 11 10 8 31 31 H 1.08003 * 120.09556 * 180.25756 * 12 10 8 32 32 H 1.08004 * 120.26644 * 179.97438 * 13 4 3 33 33 H 1.07995 * 120.78873 * 179.74831 * 14 13 4 34 34 H 0.96995 * 120.00559 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.1593 1.1392 0.0000 4 6 3.4888 1.1839 -0.0005 5 6 4.1725 2.4955 -0.0011 6 6 5.5637 2.5602 -0.1074 7 6 6.1995 3.7842 -0.1083 8 6 5.4626 4.9520 -0.0045 9 9 6.0914 6.1477 -0.0054 10 6 4.0751 4.8971 0.1020 11 7 3.3343 6.0786 0.2072 12 6 3.4286 3.6722 0.0986 13 6 4.2514 0.0106 -0.0016 14 6 3.6205 -1.2008 -0.0070 15 6 2.2075 -1.2230 0.0005 16 6 1.5098 -2.4488 0.0006 17 1 0.5059 -2.4987 -0.3944 18 6 2.1188 -3.6009 0.5124 19 7 3.2022 -3.5005 1.2383 20 14 1.3840 -5.2815 0.1587 21 1 1.9729 -5.8262 -1.0909 22 1 1.6817 -6.1994 1.2874 23 1 -0.0869 -5.1549 -0.0015 24 1 -0.3633 -0.0001 -1.0276 25 1 -0.3633 -0.8901 0.5139 26 1 -0.3633 0.8900 0.5138 27 1 6.1417 1.6514 -0.1886 28 1 7.2753 3.8320 -0.1911 29 1 3.7870 6.9365 0.2064 30 1 2.3679 6.0402 0.2810 31 1 2.3524 3.6277 0.1769 32 1 5.3302 0.0625 -0.0024 33 1 4.1880 -2.1196 -0.0120 34 1 3.6240 -4.2986 1.5932 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001243450822.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:02:00 Heat of formation + Delta-G solvation = -23.290755 kcal Electronic energy + Delta-G solvation = -19498.087252 eV Core-core repulsion = 16308.340262 eV Total energy + Delta-G solvation = -3189.746990 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 272.102 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -49.67455 -40.71591 -39.48400 -36.20690 -35.47150 -33.63131 -32.74540 -30.94714 -29.65077 -28.65092 -26.69187 -24.20906 -23.67201 -22.34958 -21.55795 -19.28261 -18.69404 -18.00396 -17.73576 -17.24987 -16.47844 -16.40328 -16.13093 -15.86129 -15.18660 -14.96680 -14.61194 -14.55754 -13.93192 -13.77243 -13.72821 -13.48301 -13.29627 -12.98091 -12.89364 -12.64492 -12.56416 -12.20148 -12.02088 -11.63609 -11.51511 -11.21396 -10.21200 -9.94511 -9.92200 -9.04263 -8.72126 -8.40793 -6.39570 -0.04277 0.57732 0.96080 1.15679 1.41093 1.54485 1.57260 2.16894 2.58797 2.89420 2.99934 3.42449 3.72004 3.73880 3.91413 4.26232 4.33560 4.55012 4.59493 4.70717 4.78337 4.97996 5.00215 5.01987 5.08574 5.17110 5.24147 5.28962 5.39052 5.52493 5.71067 5.79796 5.94163 6.02331 6.08816 6.48537 6.50099 6.70512 6.78715 6.92681 7.73083 8.18424 Molecular weight = 272.10amu Principal moments of inertia in cm(-1) A = 0.038045 B = 0.004091 C = 0.003737 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 735.786222 B = 6841.846109 C = 7491.656119 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 C -0.015 4.015 3 N -0.457 5.457 4 C -0.013 4.013 5 C 0.031 3.969 6 C -0.164 4.164 7 C -0.093 4.093 8 C -0.021 4.021 9 F -0.149 7.149 10 C 0.193 3.807 11 N -0.865 5.865 12 C -0.175 4.175 13 C -0.129 4.129 14 C -0.164 4.164 15 C 0.044 3.956 16 C -0.454 4.454 17 H 0.096 0.904 18 C 0.033 3.967 19 N -0.809 5.809 20 Si 0.989 3.011 21 H -0.262 1.262 22 H -0.269 1.269 23 H -0.252 1.252 24 H 0.062 0.938 25 H 0.068 0.932 26 H 0.060 0.940 27 H 0.138 0.862 28 H 0.158 0.842 29 H 0.407 0.593 30 H 0.409 0.591 31 H 0.127 0.873 32 H 0.127 0.873 33 H 0.119 0.881 34 H 0.294 0.706 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.527 7.616 -1.542 7.919 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 C -0.160 4.160 3 N -0.165 5.165 4 C -0.147 4.147 5 C 0.029 3.971 6 C -0.185 4.185 7 C -0.112 4.112 8 C -0.045 4.045 9 F -0.128 7.128 10 C 0.087 3.913 11 N -0.407 5.407 12 C -0.199 4.199 13 C -0.149 4.149 14 C -0.189 4.189 15 C 0.039 3.961 16 C -0.483 4.483 17 H 0.114 0.886 18 C -0.184 4.184 19 N -0.434 5.434 20 Si 0.809 3.191 21 H -0.187 1.187 22 H -0.193 1.193 23 H -0.175 1.175 24 H 0.081 0.919 25 H 0.087 0.913 26 H 0.079 0.921 27 H 0.155 0.845 28 H 0.175 0.825 29 H 0.236 0.764 30 H 0.240 0.760 31 H 0.145 0.855 32 H 0.145 0.855 33 H 0.137 0.863 34 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges 1.283 8.284 -1.388 8.496 hybrid contribution 0.296 -1.120 0.088 1.162 sum 1.579 7.163 -1.300 7.450 Atomic orbital electron populations 1.20245 0.88753 1.01771 1.01416 1.21576 0.96943 0.87869 1.09630 1.66821 1.09250 1.30347 1.10128 1.19239 0.89114 0.92038 1.14308 1.18536 0.92969 0.90781 0.94767 1.20956 0.92803 0.98049 1.06653 1.20958 1.01082 0.89924 0.99208 1.17249 0.88902 0.81385 1.16975 1.91378 1.82301 1.43830 1.95311 1.17642 0.89457 0.88331 0.95888 1.42256 1.09599 1.04592 1.84244 1.20513 1.00178 0.89452 1.09771 1.21580 1.00071 0.92883 1.00338 1.21420 0.95004 0.97094 1.05425 1.18801 0.93143 0.94250 0.89878 1.19984 1.02118 0.92469 1.33680 0.88610 1.26952 0.94480 1.05390 0.91611 1.69815 1.17473 1.33782 1.22286 0.85076 0.80016 0.75064 0.78961 1.18650 1.19341 1.17507 0.91928 0.91321 0.92121 0.84467 0.82459 0.76370 0.76039 0.85495 0.85496 0.86313 0.89448 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -2.59 9.58 71.23 0.68 -1.91 16 2 C -0.01 -0.73 6.86 43.31 0.30 -0.43 16 3 N -0.46 -22.18 9.31 -170.99 -1.59 -23.77 16 4 C -0.01 -0.59 6.73 41.94 0.28 -0.31 16 5 C 0.03 1.24 5.87 -20.05 -0.12 1.12 16 6 C -0.16 -5.47 9.41 22.54 0.21 -5.25 16 7 C -0.09 -2.68 10.00 22.25 0.22 -2.46 16 8 C -0.02 -0.63 7.32 22.58 0.17 -0.47 16 9 F -0.15 -4.18 16.63 44.97 0.75 -3.44 16 10 C 0.19 5.91 6.76 38.17 0.26 6.17 16 11 N -0.87 -19.87 9.09 -51.29 -0.47 -20.33 16 12 C -0.18 -6.34 9.41 22.65 0.21 -6.12 16 13 C -0.13 -5.98 9.37 22.29 0.21 -5.77 16 14 C -0.16 -8.37 8.73 22.64 0.20 -8.17 16 15 C 0.04 2.27 5.59 -21.17 -0.12 2.15 16 16 C -0.45 -22.23 8.16 23.39 0.19 -22.04 16 17 H 0.10 4.38 6.84 -2.91 -0.02 4.36 16 18 C 0.03 1.52 5.23 85.28 0.45 1.97 16 19 N -0.81 -39.01 10.84 21.84 0.24 -38.77 16 20 Si 0.99 34.41 29.58 68.60 2.03 36.44 16 21 H -0.26 -8.92 7.11 99.48 0.71 -8.22 16 22 H -0.27 -9.00 7.11 99.48 0.71 -8.29 16 23 H -0.25 -8.41 7.11 99.48 0.71 -7.71 16 24 H 0.06 2.30 8.14 -2.39 -0.02 2.28 16 25 H 0.07 2.69 6.76 -2.38 -0.02 2.68 16 26 H 0.06 2.25 8.14 -2.39 -0.02 2.23 16 27 H 0.14 4.21 6.17 -2.91 -0.02 4.19 16 28 H 0.16 3.52 8.06 -2.91 -0.02 3.50 16 29 H 0.41 7.82 8.31 -92.70 -0.77 7.05 16 30 H 0.41 7.99 8.84 -92.71 -0.82 7.17 16 31 H 0.13 4.73 7.53 -2.91 -0.02 4.71 16 32 H 0.13 5.06 6.17 -2.91 -0.02 5.04 16 33 H 0.12 6.15 6.18 -2.91 -0.02 6.13 16 34 H 0.29 12.73 8.30 -92.71 -0.77 11.96 16 Total: -1.00 -58.01 295.20 3.68 -54.32 By element: Atomic # 1 Polarization: 37.48 SS G_CDS: -0.41 Total: 37.07 kcal Atomic # 6 Polarization: -44.66 SS G_CDS: 3.14 Total: -41.52 kcal Atomic # 7 Polarization: -81.06 SS G_CDS: -1.82 Total: -82.88 kcal Atomic # 9 Polarization: -4.18 SS G_CDS: 0.75 Total: -3.44 kcal Atomic # 14 Polarization: 34.41 SS G_CDS: 2.03 Total: 36.44 kcal Total: -58.01 3.68 -54.32 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001243450822.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.032 kcal (2) G-P(sol) polarization free energy of solvation -58.005 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.973 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.682 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -54.323 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.291 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds