Wall clock time and date at job start Mon Mar 30 2020 01:02:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.38874 * 119.24245 * 2 1 4 4 C 1.36883 * 119.80126 * 179.72289 * 3 2 1 5 5 C 1.41120 * 118.40004 * 0.54596 * 4 3 2 6 6 C 1.40867 * 120.72342 * 179.70536 * 5 4 3 7 7 H 1.08005 * 119.99905 * 151.51777 * 6 5 4 8 8 C 1.40057 * 120.00008 * 331.51884 * 6 5 4 9 9 N 1.30791 * 119.99614 * 348.38929 * 8 6 5 10 10 Si 1.86793 * 120.00251 * 168.38871 * 8 6 5 11 11 H 1.48504 * 109.46866 * 0.02562 * 10 8 6 12 12 H 1.48501 * 109.47385 * 120.00139 * 10 8 6 13 13 H 1.48499 * 109.47412 * 240.00277 * 10 8 6 14 14 C 1.41895 * 118.55878 * 359.72389 * 5 4 3 15 15 C 1.47764 * 119.99736 * 180.02562 * 14 5 4 16 16 C 1.39752 * 120.08854 * 316.08910 * 15 14 5 17 17 C 1.37921 * 120.00254 * 179.69913 * 16 15 14 18 18 C 1.38489 * 120.20238 * 0.59876 * 17 16 15 19 19 F 1.35109 * 119.90322 * 179.70141 * 18 17 16 20 20 C 1.39283 * 120.19424 * 359.67709 * 18 17 16 21 21 N 1.39855 * 120.00677 * 180.02562 * 20 18 17 22 22 C 1.38477 * 119.98664 * 0.02562 * 20 18 17 23 23 N 1.31737 * 119.24394 * 180.28182 * 2 1 3 24 24 H 1.08999 * 109.46548 * 269.72144 * 1 2 3 25 25 H 1.09001 * 109.47110 * 149.73187 * 1 2 3 26 26 H 1.08995 * 109.47198 * 29.72527 * 1 2 3 27 27 H 1.07996 * 120.09789 * 359.97438 * 3 2 1 28 28 H 1.08006 * 120.79806 * 180.24656 * 4 3 2 29 29 H 0.96994 * 119.99600 * 179.97438 * 9 8 6 30 30 H 1.07994 * 119.99772 * 359.97438 * 16 15 14 31 31 H 1.08000 * 119.89508 * 180.27682 * 17 16 15 32 32 H 0.96992 * 119.99914 * 179.97438 * 21 20 18 33 33 H 0.97004 * 119.99660 * 359.97438 * 21 20 18 34 34 H 1.08001 * 120.09601 * 179.97438 * 22 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1854 1.2118 0.0000 4 6 3.5542 1.2251 0.0057 5 6 4.2375 -0.0096 -0.0003 6 6 5.6455 -0.0529 -0.0010 7 1 6.1601 -0.8934 0.4409 8 6 6.3780 0.9938 -0.5748 9 7 5.7711 1.8930 -1.3054 10 14 8.2218 1.1058 -0.2967 11 1 8.6627 -0.0249 0.5592 12 1 8.9244 1.0402 -1.6033 13 1 8.5441 2.3905 0.3747 14 6 3.4755 -1.2066 -0.0060 15 6 4.1583 -2.5170 -0.0118 16 6 5.2548 -2.7319 -0.8511 17 6 5.8947 -3.9537 -0.8506 18 6 5.4464 -4.9746 -0.0291 19 9 6.0741 -6.1710 -0.0379 20 6 4.3508 -4.7713 0.8065 21 7 3.9017 -5.8048 1.6349 22 6 3.7062 -3.5457 0.8169 23 7 2.1506 -1.1495 -0.0057 24 1 -0.3632 -0.0050 1.0277 25 1 -0.3633 -0.8876 -0.5180 26 1 -0.3633 0.8924 -0.5095 27 1 1.6347 2.1408 -0.0004 28 1 4.0981 2.1582 0.0098 29 1 6.2783 2.6182 -1.7024 30 1 5.6040 -1.9399 -1.4969 31 1 6.7447 -4.1165 -1.4967 32 1 3.1390 -5.6630 2.2171 33 1 4.3532 -6.6633 1.6273 34 1 2.8562 -3.3863 1.4638 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001243452029.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:02:02 Heat of formation + Delta-G solvation = -7.940472 kcal Electronic energy + Delta-G solvation = -20015.976805 eV Core-core repulsion = 16826.895452 eV Total energy + Delta-G solvation = -3189.081352 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 272.102 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -48.26423 -39.06627 -37.83567 -34.53977 -34.03978 -31.85980 -30.91518 -29.13496 -28.39484 -27.34647 -24.48608 -22.72835 -21.96303 -20.76269 -20.08548 -17.52018 -17.11391 -16.59284 -16.21476 -15.60984 -15.05413 -14.71293 -14.62833 -14.09882 -13.88439 -13.36006 -13.11235 -12.79560 -12.46131 -12.31614 -12.13601 -11.78895 -11.61026 -11.50442 -11.28614 -11.06181 -11.00721 -10.59346 -10.47330 -10.16024 -9.79200 -9.45904 -8.51386 -8.14409 -8.07944 -7.39760 -7.03293 -6.89012 -4.55118 1.68183 2.12229 2.56349 2.91646 2.98399 3.04640 3.10246 3.78636 4.13845 4.36771 4.50955 4.87374 5.34425 5.38455 5.54103 5.84985 6.00100 6.04575 6.12722 6.27436 6.32270 6.39011 6.48135 6.54789 6.74531 6.77095 6.89515 6.98974 7.01360 7.17606 7.35691 7.43096 7.63327 7.77281 7.85313 7.90097 8.01931 8.33484 8.54909 8.61252 9.52508 9.95114 Molecular weight = 272.10amu Principal moments of inertia in cm(-1) A = 0.012692 B = 0.008216 C = 0.005231 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2205.569842 B = 3407.281567 C = 5351.373079 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 C -0.007 4.007 3 C -0.143 4.143 4 C -0.125 4.125 5 C 0.085 3.915 6 C -0.436 4.436 7 H 0.091 0.909 8 C 0.073 3.927 9 N -0.788 5.788 10 Si 0.910 3.090 11 H -0.256 1.256 12 H -0.271 1.271 13 H -0.271 1.271 14 C 0.013 3.987 15 C 0.063 3.937 16 C -0.120 4.120 17 C -0.115 4.115 18 C -0.011 4.011 19 F -0.157 7.157 20 C 0.178 3.822 21 N -0.882 5.882 22 C -0.161 4.161 23 N -0.447 5.447 24 H 0.049 0.951 25 H 0.055 0.945 26 H 0.052 0.948 27 H 0.099 0.901 28 H 0.128 0.872 29 H 0.285 0.715 30 H 0.141 0.859 31 H 0.126 0.874 32 H 0.397 0.603 33 H 0.395 0.605 34 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.692 -5.373 2.398 5.924 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.149 4.149 3 C -0.163 4.163 4 C -0.150 4.150 5 C 0.080 3.920 6 C -0.465 4.465 7 H 0.109 0.891 8 C -0.146 4.146 9 N -0.413 5.413 10 Si 0.734 3.266 11 H -0.179 1.179 12 H -0.196 1.196 13 H -0.196 1.196 14 C -0.125 4.125 15 C 0.062 3.938 16 C -0.141 4.141 17 C -0.134 4.134 18 C -0.034 4.034 19 F -0.136 7.136 20 C 0.075 3.925 21 N -0.424 5.424 22 C -0.184 4.184 23 N -0.156 5.156 24 H 0.068 0.932 25 H 0.074 0.926 26 H 0.071 0.929 27 H 0.117 0.883 28 H 0.146 0.854 29 H 0.096 0.904 30 H 0.159 0.841 31 H 0.144 0.856 32 H 0.226 0.774 33 H 0.223 0.777 34 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges -1.075 -5.911 2.207 6.401 hybrid contribution 1.301 0.603 0.250 1.456 sum 0.226 -5.309 2.457 5.854 Atomic orbital electron populations 1.20288 0.91523 1.00952 1.00420 1.20269 0.94856 0.88546 1.11274 1.21270 0.95473 0.97138 1.02424 1.21445 0.92574 0.98926 1.02101 1.18336 0.94155 0.90747 0.88741 1.19685 0.90996 1.04618 1.31242 0.89083 1.26013 1.01705 0.94103 0.92810 1.69755 1.38757 1.10813 1.21943 0.86199 0.81343 0.79663 0.79443 1.17912 1.19624 1.19579 1.19413 0.88348 0.91175 1.13566 1.18232 0.92510 0.91000 0.92103 1.21154 0.96348 0.96140 1.00457 1.20757 1.00827 0.92631 0.99231 1.17153 0.97634 0.82827 1.05808 1.91351 1.81907 1.44068 1.96308 1.17569 0.93193 0.89736 0.91992 1.42216 1.38285 1.13909 1.47949 1.20587 1.02484 0.91172 1.04202 1.66852 1.09565 1.29254 1.09883 0.93180 0.92578 0.92887 0.88300 0.85392 0.90442 0.84130 0.85629 0.77446 0.77744 0.85735 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -1.30 10.15 36.01 0.37 -0.94 16 2 C -0.01 -0.16 6.79 -82.40 -0.56 -0.72 16 3 C -0.14 -3.19 9.64 -39.84 -0.38 -3.58 16 4 C -0.12 -3.05 8.72 -38.98 -0.34 -3.39 16 5 C 0.08 2.13 5.54 -106.41 -0.59 1.54 16 6 C -0.44 -10.55 6.72 -37.91 -0.25 -10.81 16 7 H 0.09 2.17 6.48 -52.48 -0.34 1.83 16 8 C 0.07 1.67 5.26 -17.31 -0.09 1.58 16 9 N -0.79 -18.71 10.91 55.55 0.61 -18.11 16 10 Si 0.91 17.45 29.58 -169.99 -5.03 12.42 16 11 H -0.26 -4.92 7.11 56.52 0.40 -4.52 16 12 H -0.27 -5.13 7.11 56.52 0.40 -4.73 16 13 H -0.27 -5.13 7.11 56.52 0.40 -4.73 16 14 C 0.01 0.31 6.43 -82.24 -0.53 -0.22 16 15 C 0.06 1.38 5.25 -104.92 -0.55 0.83 16 16 C -0.12 -2.46 7.84 -39.13 -0.31 -2.77 16 17 C -0.12 -2.09 10.00 -39.61 -0.40 -2.49 16 18 C -0.01 -0.19 7.32 -39.10 -0.29 -0.48 16 19 F -0.16 -2.67 16.63 2.25 0.04 -2.64 16 20 C 0.18 3.12 6.76 -83.72 -0.57 2.56 16 21 N -0.88 -11.95 9.09 32.44 0.29 -11.65 16 22 C -0.16 -3.14 9.50 -38.98 -0.37 -3.51 16 23 N -0.45 -10.67 10.05 -5.45 -0.05 -10.73 16 24 H 0.05 0.80 8.14 -51.93 -0.42 0.38 16 25 H 0.06 0.96 8.14 -51.93 -0.42 0.54 16 26 H 0.05 0.82 8.07 -51.93 -0.42 0.40 16 27 H 0.10 1.93 8.06 -52.49 -0.42 1.51 16 28 H 0.13 3.16 6.33 -52.48 -0.33 2.83 16 29 H 0.28 6.13 8.29 -40.82 -0.34 5.79 16 30 H 0.14 2.99 6.76 -52.49 -0.35 2.64 16 31 H 0.13 1.97 8.06 -52.49 -0.42 1.55 16 32 H 0.40 4.56 8.84 -40.82 -0.36 4.20 16 33 H 0.39 4.72 8.31 -40.82 -0.34 4.38 16 34 H 0.12 2.37 8.06 -52.49 -0.42 1.95 16 LS Contribution 297.03 15.07 4.48 4.48 Total: -1.00 -26.69 297.03 -7.92 -34.61 By element: Atomic # 1 Polarization: 17.40 SS G_CDS: -3.39 Total: 14.00 kcal Atomic # 6 Polarization: -17.53 SS G_CDS: -4.86 Total: -22.39 kcal Atomic # 7 Polarization: -41.33 SS G_CDS: 0.85 Total: -40.49 kcal Atomic # 9 Polarization: -2.67 SS G_CDS: 0.04 Total: -2.64 kcal Atomic # 14 Polarization: 17.45 SS G_CDS: -5.03 Total: 12.42 kcal Total LS contribution 4.48 Total: 4.48 kcal Total: -26.69 -7.92 -34.61 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001243452029.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.673 kcal (2) G-P(sol) polarization free energy of solvation -26.694 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.021 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.920 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.613 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.940 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds