Wall clock time and date at job start Mon Mar 30 2020 01:02:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.38874 * 119.24245 * 2 1 4 4 C 1.36883 * 119.80126 * 179.72289 * 3 2 1 5 5 C 1.41120 * 118.40004 * 0.54596 * 4 3 2 6 6 C 1.40867 * 120.72342 * 179.70536 * 5 4 3 7 7 H 1.08005 * 119.99905 * 151.51777 * 6 5 4 8 8 C 1.40057 * 120.00008 * 331.51884 * 6 5 4 9 9 N 1.30791 * 119.99614 * 348.38929 * 8 6 5 10 10 Si 1.86793 * 120.00251 * 168.38871 * 8 6 5 11 11 H 1.48504 * 109.46866 * 0.02562 * 10 8 6 12 12 H 1.48501 * 109.47385 * 120.00139 * 10 8 6 13 13 H 1.48499 * 109.47412 * 240.00277 * 10 8 6 14 14 C 1.41895 * 118.55878 * 359.72389 * 5 4 3 15 15 C 1.47764 * 119.99736 * 180.02562 * 14 5 4 16 16 C 1.39752 * 120.08854 * 316.08910 * 15 14 5 17 17 C 1.37921 * 120.00254 * 179.69913 * 16 15 14 18 18 C 1.38489 * 120.20238 * 0.59876 * 17 16 15 19 19 F 1.35109 * 119.90322 * 179.70141 * 18 17 16 20 20 C 1.39283 * 120.19424 * 359.67709 * 18 17 16 21 21 N 1.39855 * 120.00677 * 180.02562 * 20 18 17 22 22 C 1.38477 * 119.98664 * 0.02562 * 20 18 17 23 23 N 1.31737 * 119.24394 * 180.28182 * 2 1 3 24 24 H 1.08999 * 109.46548 * 269.72144 * 1 2 3 25 25 H 1.09001 * 109.47110 * 149.73187 * 1 2 3 26 26 H 1.08995 * 109.47198 * 29.72527 * 1 2 3 27 27 H 1.07996 * 120.09789 * 359.97438 * 3 2 1 28 28 H 1.08006 * 120.79806 * 180.24656 * 4 3 2 29 29 H 0.96994 * 119.99600 * 179.97438 * 9 8 6 30 30 H 1.07994 * 119.99772 * 359.97438 * 16 15 14 31 31 H 1.08000 * 119.89508 * 180.27682 * 17 16 15 32 32 H 0.96992 * 119.99914 * 179.97438 * 21 20 18 33 33 H 0.97004 * 119.99660 * 359.97438 * 21 20 18 34 34 H 1.08001 * 120.09601 * 179.97438 * 22 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1854 1.2118 0.0000 4 6 3.5542 1.2251 0.0057 5 6 4.2375 -0.0096 -0.0003 6 6 5.6455 -0.0529 -0.0010 7 1 6.1601 -0.8934 0.4409 8 6 6.3780 0.9938 -0.5748 9 7 5.7711 1.8930 -1.3054 10 14 8.2218 1.1058 -0.2967 11 1 8.6627 -0.0249 0.5592 12 1 8.9244 1.0402 -1.6033 13 1 8.5441 2.3905 0.3747 14 6 3.4755 -1.2066 -0.0060 15 6 4.1583 -2.5170 -0.0118 16 6 5.2548 -2.7319 -0.8511 17 6 5.8947 -3.9537 -0.8506 18 6 5.4464 -4.9746 -0.0291 19 9 6.0741 -6.1710 -0.0379 20 6 4.3508 -4.7713 0.8065 21 7 3.9017 -5.8048 1.6349 22 6 3.7062 -3.5457 0.8169 23 7 2.1506 -1.1495 -0.0057 24 1 -0.3632 -0.0050 1.0277 25 1 -0.3633 -0.8876 -0.5180 26 1 -0.3633 0.8924 -0.5095 27 1 1.6347 2.1408 -0.0004 28 1 4.0981 2.1582 0.0098 29 1 6.2783 2.6182 -1.7024 30 1 5.6040 -1.9399 -1.4969 31 1 6.7447 -4.1165 -1.4967 32 1 3.1390 -5.6630 2.2171 33 1 4.3532 -6.6633 1.6273 34 1 2.8562 -3.3863 1.4638 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001243452029.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:02:02 Heat of formation + Delta-G solvation = -22.469698 kcal Electronic energy + Delta-G solvation = -20016.606839 eV Core-core repulsion = 16826.895452 eV Total energy + Delta-G solvation = -3189.711387 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 272.102 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -49.66272 -40.72679 -39.39852 -36.20217 -35.49468 -33.46493 -32.68135 -30.67695 -29.92165 -28.91608 -26.15802 -24.35110 -23.48256 -22.48787 -21.67582 -19.27238 -18.54782 -17.95922 -17.69724 -17.30539 -16.46757 -16.32513 -16.08450 -15.66954 -15.50248 -14.93444 -14.57760 -14.40931 -13.97135 -13.92569 -13.62722 -13.34263 -13.18197 -13.10718 -12.85461 -12.65421 -12.61287 -12.15078 -11.97224 -11.67460 -11.42556 -11.15618 -10.23509 -9.92939 -9.74701 -9.08343 -8.66599 -8.36773 -6.35912 0.10265 0.63119 0.87068 1.17438 1.40511 1.50243 1.54475 2.18979 2.70969 2.87673 2.92154 3.42655 3.65209 3.81115 3.99957 4.32936 4.42589 4.56001 4.59937 4.66229 4.83256 4.96840 5.00789 5.02114 5.10542 5.22286 5.25017 5.31077 5.37076 5.52960 5.79057 5.82334 5.97960 6.06900 6.10069 6.51021 6.55378 6.76216 6.82134 6.96670 7.73809 8.25529 Molecular weight = 272.10amu Principal moments of inertia in cm(-1) A = 0.012692 B = 0.008216 C = 0.005231 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2205.569842 B = 3407.281567 C = 5351.373079 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 C -0.017 4.017 3 C -0.147 4.147 4 C -0.147 4.147 5 C 0.055 3.945 6 C -0.454 4.454 7 H 0.086 0.914 8 C 0.039 3.961 9 N -0.818 5.818 10 Si 0.976 3.024 11 H -0.257 1.257 12 H -0.264 1.264 13 H -0.265 1.265 14 C -0.001 4.001 15 C 0.039 3.961 16 C -0.135 4.135 17 C -0.106 4.106 18 C -0.012 4.012 19 F -0.148 7.148 20 C 0.190 3.810 21 N -0.864 5.864 22 C -0.168 4.168 23 N -0.464 5.464 24 H 0.068 0.932 25 H 0.058 0.942 26 H 0.076 0.924 27 H 0.127 0.873 28 H 0.117 0.883 29 H 0.292 0.708 30 H 0.123 0.877 31 H 0.151 0.849 32 H 0.410 0.590 33 H 0.407 0.593 34 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.596 -6.556 2.848 7.173 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C -0.159 4.159 3 C -0.167 4.167 4 C -0.173 4.173 5 C 0.051 3.949 6 C -0.483 4.483 7 H 0.104 0.896 8 C -0.178 4.178 9 N -0.443 5.443 10 Si 0.796 3.204 11 H -0.181 1.181 12 H -0.188 1.188 13 H -0.189 1.189 14 C -0.138 4.138 15 C 0.037 3.963 16 C -0.156 4.156 17 C -0.125 4.125 18 C -0.036 4.036 19 F -0.127 7.127 20 C 0.084 3.916 21 N -0.407 5.407 22 C -0.192 4.192 23 N -0.172 5.172 24 H 0.086 0.914 25 H 0.077 0.923 26 H 0.094 0.906 27 H 0.145 0.855 28 H 0.135 0.865 29 H 0.103 0.897 30 H 0.141 0.859 31 H 0.168 0.832 32 H 0.240 0.760 33 H 0.236 0.764 34 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges -1.008 -7.128 2.678 7.681 hybrid contribution 1.173 0.868 0.130 1.465 sum 0.165 -6.260 2.809 6.863 Atomic orbital electron populations 1.20345 0.88069 1.02253 1.01973 1.21088 0.97254 0.88089 1.09514 1.21582 0.94936 0.98621 1.01596 1.21494 0.93681 0.98470 1.03632 1.18675 0.95045 0.91442 0.89768 1.19740 0.91000 1.05300 1.32248 0.89594 1.26734 1.05649 0.93352 0.92032 1.69794 1.40497 1.11461 1.22592 0.85223 0.76135 0.79563 0.79438 1.18050 1.18846 1.18925 1.19840 0.88761 0.92187 1.13025 1.18321 0.93421 0.90834 0.93707 1.20982 0.96859 0.96807 1.00936 1.20933 1.00899 0.91614 0.99080 1.17178 0.97720 0.83063 1.05678 1.91377 1.81711 1.43383 1.96237 1.17527 0.92494 0.89790 0.91771 1.42185 1.38329 1.13361 1.46782 1.20519 1.02869 0.91521 1.04248 1.66974 1.09517 1.30055 1.10700 0.91367 0.92313 0.90559 0.85533 0.86471 0.89720 0.85906 0.83160 0.76007 0.76375 0.85693 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -2.28 10.15 71.24 0.72 -1.56 16 2 C -0.02 -0.77 6.79 42.73 0.29 -0.48 16 3 C -0.15 -6.62 9.64 22.10 0.21 -6.40 16 4 C -0.15 -7.41 8.72 22.66 0.20 -7.21 16 5 C 0.06 2.87 5.54 -21.02 -0.12 2.76 16 6 C -0.45 -22.76 6.72 23.35 0.16 -22.60 16 7 H 0.09 4.26 6.48 -2.91 -0.02 4.24 16 8 C 0.04 1.81 5.26 85.29 0.45 2.26 16 9 N -0.82 -39.87 10.91 21.85 0.24 -39.63 16 10 Si 0.98 36.04 29.58 68.60 2.03 38.07 16 11 H -0.26 -9.44 7.11 99.48 0.71 -8.74 16 12 H -0.26 -9.36 7.11 99.48 0.71 -8.66 16 13 H -0.26 -9.44 7.11 99.48 0.71 -8.73 16 14 C 0.00 -0.03 6.43 42.45 0.27 0.24 16 15 C 0.04 1.73 5.25 -20.06 -0.11 1.63 16 16 C -0.13 -5.61 7.84 22.56 0.18 -5.43 16 17 C -0.11 -3.74 10.00 22.25 0.22 -3.51 16 18 C -0.01 -0.42 7.32 22.58 0.17 -0.25 16 19 F -0.15 -4.61 16.63 44.97 0.75 -3.86 16 20 C 0.19 6.31 6.76 38.17 0.26 6.56 16 21 N -0.86 -21.08 9.09 -51.29 -0.47 -21.55 16 22 C -0.17 -6.49 9.50 22.66 0.22 -6.27 16 23 N -0.46 -22.39 10.05 -171.15 -1.72 -24.11 16 24 H 0.07 2.02 8.14 -2.39 -0.02 2.00 16 25 H 0.06 1.91 8.14 -2.39 -0.02 1.89 16 26 H 0.08 2.16 8.07 -2.39 -0.02 2.14 16 27 H 0.13 4.81 8.06 -2.91 -0.02 4.79 16 28 H 0.12 6.04 6.33 -2.91 -0.02 6.02 16 29 H 0.29 12.81 8.29 -92.71 -0.77 12.04 16 30 H 0.12 5.48 6.76 -2.91 -0.02 5.46 16 31 H 0.15 4.43 8.06 -2.91 -0.02 4.41 16 32 H 0.41 8.29 8.84 -92.71 -0.82 7.48 16 33 H 0.41 8.41 8.31 -92.71 -0.77 7.64 16 34 H 0.13 4.72 8.06 -2.91 -0.02 4.70 16 Total: -1.00 -58.21 297.03 3.52 -54.69 By element: Atomic # 1 Polarization: 37.10 SS G_CDS: -0.42 Total: 36.67 kcal Atomic # 6 Polarization: -43.41 SS G_CDS: 3.12 Total: -40.29 kcal Atomic # 7 Polarization: -83.34 SS G_CDS: -1.95 Total: -85.29 kcal Atomic # 9 Polarization: -4.61 SS G_CDS: 0.75 Total: -3.86 kcal Atomic # 14 Polarization: 36.04 SS G_CDS: 2.03 Total: 38.07 kcal Total: -58.21 3.52 -54.69 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001243452029.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.221 kcal (2) G-P(sol) polarization free energy of solvation -58.213 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.993 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.523 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -54.690 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.470 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds