Wall clock time and date at job start Mon Mar 30 2020 01:04:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.38409 * 120.84040 * 2 1 4 4 C 1.38295 * 119.37933 * 180.27340 * 3 2 1 5 5 N 1.31985 * 121.12583 * 359.71194 * 4 3 2 6 6 C 1.31878 * 121.84038 * 0.02562 * 5 4 3 7 7 F 1.35096 * 119.75403 * 180.02562 * 6 5 4 8 8 C 1.39923 * 120.83872 * 179.73889 * 2 1 3 9 9 C 1.47889 * 120.57891 * 0.02562 * 8 2 1 10 10 C 1.39940 * 119.45408 * 131.88140 * 9 8 2 11 11 C 1.36575 * 119.46482 * 180.02562 * 10 9 8 12 12 C 1.41314 * 118.42194 * 0.02562 * 11 10 9 13 13 C 1.41034 * 120.55461 * 179.72155 * 12 11 10 14 14 H 1.08002 * 120.00072 * 154.42375 * 13 12 11 15 15 C 1.40017 * 119.99986 * 334.42436 * 13 12 11 16 16 N 1.30803 * 120.00025 * 343.24032 * 15 13 12 17 17 Si 1.86799 * 120.00178 * 163.23788 * 15 13 12 18 18 H 1.48494 * 109.47161 * 359.97438 * 17 15 13 19 19 H 1.48501 * 109.47212 * 120.00153 * 17 15 13 20 20 H 1.48508 * 109.47044 * 239.99827 * 17 15 13 21 21 C 1.40956 * 118.89455 * 359.97438 * 12 11 10 22 22 C 1.50700 * 119.79641 * 179.97438 * 21 12 11 23 23 N 1.31262 * 120.40320 * 0.02562 * 21 12 11 24 24 H 1.08998 * 109.46650 * 270.05640 * 1 2 3 25 25 H 1.08998 * 109.47358 * 30.05863 * 1 2 3 26 26 H 1.09002 * 109.46805 * 150.05788 * 1 2 3 27 27 H 1.08001 * 120.31271 * 0.02562 * 3 2 1 28 28 H 1.07996 * 119.43813 * 179.72693 * 4 3 2 29 29 H 1.08005 * 120.26348 * 0.04608 * 10 9 8 30 30 H 1.08005 * 120.78736 * 180.02562 * 11 10 9 31 31 H 0.96993 * 119.99987 * 180.02562 * 16 15 13 32 32 H 1.08996 * 109.46976 * 89.99885 * 22 21 12 33 33 H 1.08998 * 109.47030 * 210.00221 * 22 21 12 34 34 H 1.09000 * 109.46948 * 330.00215 * 22 21 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2166 1.1884 0.0000 4 6 3.5991 1.1531 -0.0058 5 7 4.2523 0.0063 -0.0056 6 6 3.6232 -1.1528 -0.0004 7 9 4.3341 -2.3015 0.0001 8 6 2.2243 -1.2014 0.0055 9 6 1.5168 -2.5000 0.0108 10 6 1.9022 -3.4974 -0.8920 11 6 1.2486 -4.6966 -0.8876 12 6 0.1972 -4.8861 0.0374 13 6 -0.5120 -6.1046 0.0769 14 1 -0.9987 -6.4168 0.9891 15 6 -0.5850 -6.9095 -1.0664 16 7 -0.2942 -6.4080 -2.2390 17 14 -1.0977 -8.6996 -0.9173 18 1 -1.3704 -9.0193 0.5069 19 1 -2.3246 -8.9317 -1.7210 20 1 -0.0049 -9.5709 -1.4193 21 6 -0.1347 -3.8352 0.9161 22 6 -1.2528 -4.0151 1.9103 23 7 0.5237 -2.7004 0.8731 24 1 -0.3632 0.0010 1.0277 25 1 -0.3634 0.8894 -0.5147 26 1 -0.3633 -0.8905 -0.5130 27 1 1.6955 2.1344 0.0004 28 1 4.1536 2.0798 -0.0102 29 1 2.7103 -3.3203 -1.5863 30 1 1.5288 -5.4814 -1.5747 31 1 -0.3452 -6.9655 -3.0311 32 1 -0.8518 -4.4224 2.8383 33 1 -1.7210 -3.0511 2.1089 34 1 -1.9944 -4.7021 1.5026 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001243550770.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:04:21 Heat of formation + Delta-G solvation = -10.532886 kcal Electronic energy + Delta-G solvation = -20137.516580 eV Core-core repulsion = 16948.322812 eV Total energy + Delta-G solvation = -3189.193768 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 272.102 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -49.98376 -41.19828 -40.10867 -36.28246 -35.01760 -33.75965 -32.64289 -31.34759 -29.06691 -28.71015 -26.94786 -24.64934 -23.34332 -22.50866 -22.15235 -19.32455 -18.45397 -18.24387 -17.71974 -17.11806 -16.93483 -16.44996 -15.69803 -15.50016 -15.05542 -14.71607 -14.58225 -14.40827 -14.07829 -13.60425 -13.58472 -13.50561 -13.36669 -13.30965 -12.97938 -12.76549 -12.66064 -12.57386 -12.19382 -11.66690 -11.25347 -10.71329 -10.56244 -10.22363 -10.06772 -9.91721 -9.20717 -8.76286 -6.45892 -0.18207 0.12630 0.77864 1.03986 1.38642 1.49041 1.54790 2.14393 2.54397 2.60262 2.75003 3.53881 3.55104 3.66323 3.87299 4.08505 4.20492 4.46130 4.54627 4.58754 4.70847 4.78932 4.84076 4.89875 4.90571 4.99323 5.01462 5.12566 5.21788 5.26132 5.43936 5.49633 5.63033 5.81524 5.90974 5.94827 6.42890 6.66438 6.69057 6.73761 7.63549 8.14897 Molecular weight = 272.10amu Principal moments of inertia in cm(-1) A = 0.029139 B = 0.005188 C = 0.004752 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 960.677072 B = 5395.384065 C = 5891.112664 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.096 4.096 2 C -0.016 4.016 3 C -0.165 4.165 4 C 0.121 3.879 5 N -0.537 5.537 6 C 0.273 3.727 7 F -0.129 7.129 8 C -0.084 4.084 9 C -0.007 4.007 10 C -0.127 4.127 11 C -0.162 4.162 12 C 0.048 3.952 13 C -0.455 4.455 14 H 0.099 0.901 15 C 0.034 3.966 16 N -0.810 5.810 17 Si 0.988 3.012 18 H -0.250 1.250 19 H -0.263 1.263 20 H -0.268 1.268 21 C -0.011 4.011 22 C -0.063 4.063 23 N -0.441 5.441 24 H 0.082 0.918 25 H 0.099 0.901 26 H 0.042 0.958 27 H 0.188 0.812 28 H 0.210 0.790 29 H 0.099 0.901 30 H 0.112 0.888 31 H 0.294 0.706 32 H 0.060 0.940 33 H 0.064 0.936 34 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.553 9.231 1.992 9.459 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.024 4.024 3 C -0.184 4.184 4 C -0.035 4.035 5 N -0.252 5.252 6 C 0.121 3.879 7 F -0.108 7.108 8 C -0.089 4.089 9 C -0.142 4.142 10 C -0.147 4.147 11 C -0.187 4.187 12 C 0.043 3.957 13 C -0.483 4.483 14 H 0.117 0.883 15 C -0.184 4.184 16 N -0.434 5.434 17 Si 0.808 3.192 18 H -0.173 1.173 19 H -0.188 1.188 20 H -0.192 1.192 21 C -0.157 4.157 22 C -0.120 4.120 23 N -0.149 5.149 24 H 0.101 0.899 25 H 0.117 0.883 26 H 0.061 0.939 27 H 0.205 0.795 28 H 0.226 0.774 29 H 0.118 0.882 30 H 0.129 0.871 31 H 0.105 0.895 32 H 0.079 0.921 33 H 0.083 0.917 34 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges 0.169 9.789 2.283 10.053 hybrid contribution -0.216 -2.119 -1.014 2.359 sum -0.047 7.670 1.269 7.774 Atomic orbital electron populations 1.20678 0.88655 1.02628 1.03285 1.20699 0.98063 0.90958 0.92681 1.22425 0.95086 0.99191 1.01693 1.23257 0.92433 0.94467 0.93391 1.66968 1.42893 0.98108 1.17238 1.18434 0.86130 0.82000 1.01371 1.91533 1.79300 1.46386 1.93607 1.19308 0.90939 0.94415 1.04217 1.18646 1.01135 0.93918 1.00483 1.21333 0.99626 0.94830 0.98932 1.21241 0.97411 0.97090 1.03003 1.18769 0.91262 0.94001 0.91665 1.19982 1.27566 1.02191 0.98527 0.88325 1.26984 0.92551 1.05127 0.93723 1.69842 1.33866 1.39420 1.00250 0.85052 0.78693 0.75086 0.80399 1.17271 1.18752 1.19250 1.21608 1.01174 0.89493 1.03392 1.20243 0.94514 1.01637 0.95649 1.66926 1.05188 1.23441 1.19376 0.89926 0.88281 0.93938 0.79498 0.77392 0.88248 0.87050 0.89455 0.92104 0.91660 0.91165 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -2.83 8.99 71.24 0.64 -2.19 16 2 C -0.02 -0.51 5.94 -19.41 -0.12 -0.62 16 3 C -0.16 -3.77 9.80 22.32 0.22 -3.55 16 4 C 0.12 2.92 11.17 84.68 0.95 3.86 16 5 N -0.54 -18.47 10.36 -195.71 -2.03 -20.50 16 6 C 0.27 11.11 8.27 85.11 0.70 11.81 16 7 F -0.13 -5.70 15.74 44.97 0.71 -5.00 16 8 C -0.08 -3.46 5.62 -19.89 -0.11 -3.57 16 9 C -0.01 -0.32 5.38 41.93 0.23 -0.09 16 10 C -0.13 -6.40 8.79 22.29 0.20 -6.21 16 11 C -0.16 -8.68 8.72 22.64 0.20 -8.48 16 12 C 0.05 2.51 5.57 -21.17 -0.12 2.39 16 13 C -0.45 -22.48 8.13 23.39 0.19 -22.29 16 14 H 0.10 4.53 6.88 -2.91 -0.02 4.51 16 15 C 0.03 1.58 5.17 85.28 0.44 2.03 16 16 N -0.81 -39.99 11.00 21.84 0.24 -39.75 16 17 Si 0.99 35.00 29.59 68.60 2.03 37.03 16 18 H -0.25 -8.50 7.11 99.48 0.71 -7.79 16 19 H -0.26 -8.91 7.11 99.48 0.71 -8.20 16 20 H -0.27 -9.34 7.11 99.48 0.71 -8.64 16 21 C -0.01 -0.55 6.86 43.31 0.30 -0.25 16 22 C -0.06 -2.48 9.58 71.24 0.68 -1.80 16 23 N -0.44 -21.15 8.65 -170.99 -1.48 -22.63 16 24 H 0.08 2.39 8.14 -2.39 -0.02 2.37 16 25 H 0.10 2.08 8.10 -2.39 -0.02 2.06 16 26 H 0.04 1.57 6.79 -2.39 -0.02 1.55 16 27 H 0.19 2.41 8.06 -2.91 -0.02 2.39 16 28 H 0.21 2.88 8.06 -2.91 -0.02 2.85 16 29 H 0.10 4.78 7.59 -2.91 -0.02 4.76 16 30 H 0.11 6.11 6.31 -2.91 -0.02 6.09 16 31 H 0.29 13.03 8.29 -92.71 -0.77 12.26 16 32 H 0.06 2.22 8.14 -2.39 -0.02 2.20 16 33 H 0.06 2.32 8.14 -2.39 -0.02 2.30 16 34 H 0.07 2.70 6.76 -2.39 -0.02 2.68 16 Total: -1.00 -63.41 295.92 5.00 -58.41 By element: Atomic # 1 Polarization: 20.28 SS G_CDS: 1.13 Total: 21.41 kcal Atomic # 6 Polarization: -33.37 SS G_CDS: 4.39 Total: -28.98 kcal Atomic # 7 Polarization: -79.61 SS G_CDS: -3.27 Total: -82.88 kcal Atomic # 9 Polarization: -5.70 SS G_CDS: 0.71 Total: -5.00 kcal Atomic # 14 Polarization: 35.00 SS G_CDS: 2.03 Total: 37.03 kcal Total: -63.41 5.00 -58.41 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001243550770.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.876 kcal (2) G-P(sol) polarization free energy of solvation -63.407 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.531 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.999 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.409 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.533 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds