Wall clock time and date at job start Mon Mar 30 2020 01:04:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50694 * 1 3 3 C 1.38875 * 119.24712 * 2 1 4 4 C 1.36884 * 119.80665 * 179.97438 * 3 2 1 5 5 C 1.41124 * 118.40045 * 359.73262 * 4 3 2 6 6 C 1.40864 * 120.72329 * 180.26491 * 5 4 3 7 7 H 1.08002 * 119.99836 * 205.16719 * 6 5 4 8 8 C 1.40062 * 119.99867 * 25.16238 * 6 5 4 9 9 N 1.30773 * 120.00107 * 15.99122 * 8 6 5 10 10 Si 1.86797 * 119.99808 * 195.98884 * 8 6 5 11 11 H 1.48501 * 109.47310 * 90.00202 * 10 8 6 12 12 H 1.48503 * 109.47178 * 210.00396 * 10 8 6 13 13 H 1.48498 * 109.47375 * 330.00044 * 10 8 6 14 14 C 1.41906 * 118.55643 * 0.50430 * 5 4 3 15 15 C 1.47728 * 119.99718 * 179.75866 * 14 5 4 16 16 C 1.40039 * 120.58280 * 236.63553 * 15 14 5 17 17 C 1.50698 * 120.84198 * 0.03519 * 16 15 14 18 18 C 1.38345 * 118.31299 * 180.02562 * 16 15 14 19 19 C 1.38346 * 119.38630 * 359.97438 * 18 16 15 20 20 N 1.31958 * 121.13987 * 359.97438 * 19 18 16 21 21 C 1.31887 * 121.84591 * 0.02562 * 20 19 18 22 22 F 1.35112 * 119.76086 * 180.02562 * 21 20 19 23 23 N 1.31740 * 119.24336 * 179.97438 * 2 1 3 24 24 H 1.08995 * 109.47305 * 270.02439 * 1 2 3 25 25 H 1.09004 * 109.47049 * 30.01826 * 1 2 3 26 26 H 1.09002 * 109.47627 * 150.01523 * 1 2 3 27 27 H 1.07990 * 120.09382 * 0.02562 * 3 2 1 28 28 H 1.07997 * 120.80090 * 180.02562 * 4 3 2 29 29 H 0.97004 * 120.00244 * 179.97438 * 9 8 6 30 30 H 1.09005 * 109.47178 * 270.08127 * 17 16 15 31 31 H 1.09001 * 109.47110 * 30.08472 * 17 16 15 32 32 H 1.08998 * 109.47131 * 150.08265 * 17 16 15 33 33 H 1.08000 * 120.30853 * 179.71543 * 18 16 15 34 34 H 1.08001 * 119.43119 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.1854 1.2117 0.0000 4 6 3.5542 1.2251 0.0005 5 6 4.2375 -0.0097 0.0069 6 6 5.6455 -0.0530 0.0133 7 1 6.1610 -0.9168 -0.3799 8 6 6.3769 1.0242 0.5295 9 7 5.7848 1.9173 1.2791 10 14 8.1983 1.1850 0.1472 11 1 8.3752 1.9814 -1.0937 12 1 8.8824 1.8672 1.2749 13 1 8.7852 -0.1656 -0.0436 14 6 3.4755 -1.2067 0.0014 15 6 4.1581 -2.5169 0.0024 16 6 3.9039 -3.4534 -1.0072 17 6 2.9310 -3.1484 -2.1169 18 6 4.5688 -4.6657 -0.9601 19 6 5.4560 -4.9137 0.0720 20 7 5.6790 -4.0140 1.0112 21 6 5.0712 -2.8436 1.0120 22 9 5.3315 -1.9533 1.9944 23 7 2.1505 -1.1495 0.0005 24 1 -0.3634 0.0004 1.0276 25 1 -0.3633 0.8899 -0.5141 26 1 -0.3634 -0.8901 -0.5136 27 1 1.6348 2.1407 0.0004 28 1 4.0981 2.1581 0.0010 29 1 6.2914 2.6631 1.6369 30 1 1.9320 -3.4706 -1.8231 31 1 2.9247 -2.0756 -2.3099 32 1 3.2327 -3.6783 -3.0204 33 1 4.3936 -5.4133 -1.7196 34 1 5.9751 -5.8600 0.1097 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001243551665.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:04:24 Heat of formation + Delta-G solvation = 6.960770 kcal Electronic energy + Delta-G solvation = -20755.488263 eV Core-core repulsion = 17567.053077 eV Total energy + Delta-G solvation = -3188.435186 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 272.102 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -47.94866 -39.59502 -38.31315 -34.40830 -33.74364 -31.85282 -30.85844 -29.45672 -28.00589 -27.30929 -24.63630 -23.18308 -21.69028 -20.78496 -20.50601 -17.48522 -16.68816 -16.63893 -15.75394 -15.71601 -15.06131 -14.39655 -14.26256 -13.92718 -13.34506 -13.11760 -12.96228 -12.78831 -12.48171 -12.06840 -11.98555 -11.90293 -11.76647 -11.59796 -11.55645 -11.25116 -11.03581 -11.01130 -10.62234 -9.99856 -9.46649 -9.17681 -8.99629 -8.51779 -8.17470 -8.09210 -7.45565 -6.97815 -4.59022 1.47690 1.68908 2.51902 2.85189 2.96625 3.01272 3.10596 3.77393 4.17837 4.28359 4.45303 5.12255 5.16280 5.25461 5.36052 5.57745 5.79637 5.86658 6.00835 6.09294 6.14136 6.27649 6.31809 6.37746 6.40079 6.49113 6.54994 6.73131 6.82978 6.89897 7.01287 7.10424 7.29082 7.59569 7.71392 7.83566 8.24235 8.28348 8.51014 8.58148 9.48972 9.89823 Molecular weight = 272.10amu Principal moments of inertia in cm(-1) A = 0.012847 B = 0.010620 C = 0.006692 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2179.022525 B = 2635.803680 C = 4182.994749 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 C -0.013 4.013 3 C -0.138 4.138 4 C -0.128 4.128 5 C 0.089 3.911 6 C -0.426 4.426 7 H 0.079 0.921 8 C 0.079 3.921 9 N -0.775 5.775 10 Si 0.910 3.090 11 H -0.264 1.264 12 H -0.273 1.273 13 H -0.258 1.258 14 C 0.005 3.995 15 C -0.042 4.042 16 C -0.015 4.015 17 C -0.101 4.101 18 C -0.195 4.195 19 C 0.110 3.890 20 N -0.528 5.528 21 C 0.324 3.676 22 F -0.095 7.095 23 N -0.439 5.439 24 H 0.049 0.951 25 H 0.052 0.948 26 H 0.054 0.946 27 H 0.099 0.901 28 H 0.129 0.871 29 H 0.287 0.713 30 H 0.076 0.924 31 H 0.074 0.926 32 H 0.059 0.941 33 H 0.132 0.868 34 H 0.156 0.844 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.750 -5.056 -4.643 7.084 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C -0.156 4.156 3 C -0.159 4.159 4 C -0.153 4.153 5 C 0.084 3.916 6 C -0.455 4.455 7 H 0.097 0.903 8 C -0.143 4.143 9 N -0.398 5.398 10 Si 0.733 3.267 11 H -0.189 1.189 12 H -0.198 1.198 13 H -0.182 1.182 14 C -0.134 4.134 15 C -0.046 4.046 16 C -0.024 4.024 17 C -0.157 4.157 18 C -0.216 4.216 19 C -0.046 4.046 20 N -0.243 5.243 21 C 0.170 3.830 22 F -0.074 7.074 23 N -0.147 5.147 24 H 0.068 0.932 25 H 0.071 0.929 26 H 0.073 0.927 27 H 0.117 0.883 28 H 0.146 0.854 29 H 0.098 0.902 30 H 0.095 0.905 31 H 0.092 0.908 32 H 0.078 0.922 33 H 0.150 0.850 34 H 0.173 0.827 Dipole moment (debyes) X Y Z Total from point charges -1.580 -5.729 -3.779 7.043 hybrid contribution 0.915 1.374 -0.375 1.693 sum -0.666 -4.355 -4.155 6.056 Atomic orbital electron populations 1.20264 0.91470 1.00771 1.00490 1.20208 0.94781 0.88446 1.12129 1.21249 0.95360 0.97172 1.02098 1.21411 0.92668 0.98716 1.02531 1.18252 0.93878 0.90783 0.88674 1.19495 0.91052 1.02097 1.32816 0.90292 1.25982 1.01714 0.94266 0.92291 1.69749 1.39151 1.10065 1.20810 0.86245 0.81139 0.80075 0.79211 1.18903 1.19770 1.18170 1.18842 0.88520 0.89947 1.16043 1.19025 0.96875 0.94699 0.94029 1.20324 0.95176 0.92131 0.94728 1.20657 0.97500 1.03145 0.94411 1.21815 1.00459 0.97909 1.01368 1.22238 0.95906 0.96952 0.89526 1.66893 1.26591 1.02235 1.28562 1.18339 0.93280 0.85322 0.86060 1.91674 1.92230 1.64310 1.59172 1.66808 1.09165 1.29340 1.09392 0.93236 0.92919 0.92654 0.88263 0.85372 0.90195 0.90504 0.90751 0.92179 0.84963 0.82726 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -1.26 10.15 36.00 0.37 -0.90 16 2 C -0.01 -0.29 6.79 -82.40 -0.56 -0.85 16 3 C -0.14 -3.11 9.64 -39.84 -0.38 -3.49 16 4 C -0.13 -3.16 8.74 -38.98 -0.34 -3.50 16 5 C 0.09 2.29 5.37 -106.41 -0.57 1.72 16 6 C -0.43 -10.89 6.74 -37.90 -0.26 -11.14 16 7 H 0.08 2.03 6.81 -52.49 -0.36 1.67 16 8 C 0.08 1.90 5.20 -17.32 -0.09 1.81 16 9 N -0.77 -19.03 10.93 55.55 0.61 -18.42 16 10 Si 0.91 18.35 29.59 -169.99 -5.03 13.32 16 11 H -0.26 -5.16 7.11 56.52 0.40 -4.76 16 12 H -0.27 -5.36 7.11 56.52 0.40 -4.96 16 13 H -0.26 -5.30 7.11 56.52 0.40 -4.90 16 14 C 0.00 0.11 5.00 -82.25 -0.41 -0.30 16 15 C -0.04 -0.95 4.85 -104.69 -0.51 -1.45 16 16 C -0.02 -0.29 5.95 -103.91 -0.62 -0.91 16 17 C -0.10 -1.64 9.24 36.00 0.33 -1.31 16 18 C -0.20 -3.04 9.80 -39.50 -0.39 -3.43 16 19 C 0.11 1.80 11.17 -17.46 -0.20 1.60 16 20 N -0.53 -10.89 10.36 -13.19 -0.14 -11.02 16 21 C 0.32 7.49 7.30 -16.87 -0.12 7.37 16 22 F -0.10 -2.42 15.25 2.25 0.03 -2.38 16 23 N -0.44 -10.38 9.39 -5.46 -0.05 -10.43 16 24 H 0.05 0.82 8.14 -51.93 -0.42 0.40 16 25 H 0.05 0.80 8.07 -51.93 -0.42 0.38 16 26 H 0.05 0.92 8.14 -51.93 -0.42 0.49 16 27 H 0.10 1.94 8.06 -52.49 -0.42 1.52 16 28 H 0.13 3.20 6.24 -52.49 -0.33 2.87 16 29 H 0.29 6.37 8.30 -40.82 -0.34 6.03 16 30 H 0.08 1.21 8.14 -51.93 -0.42 0.79 16 31 H 0.07 1.39 7.04 -51.93 -0.37 1.02 16 32 H 0.06 0.79 8.10 -51.93 -0.42 0.36 16 33 H 0.13 1.54 8.06 -52.49 -0.42 1.12 16 34 H 0.16 1.87 8.06 -52.49 -0.42 1.45 16 LS Contribution 295.93 15.07 4.46 4.46 Total: -1.00 -28.35 295.93 -7.42 -35.77 By element: Atomic # 1 Polarization: 7.04 SS G_CDS: -3.56 Total: 3.48 kcal Atomic # 6 Polarization: -11.03 SS G_CDS: -3.75 Total: -14.78 kcal Atomic # 7 Polarization: -40.29 SS G_CDS: 0.42 Total: -39.87 kcal Atomic # 9 Polarization: -2.42 SS G_CDS: 0.03 Total: -2.38 kcal Atomic # 14 Polarization: 18.35 SS G_CDS: -5.03 Total: 13.32 kcal Total LS contribution 4.46 Total: 4.46 kcal Total: -28.35 -7.42 -35.77 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001243551665.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.733 kcal (2) G-P(sol) polarization free energy of solvation -28.348 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 14.385 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.424 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.772 kcal (6) G-S(sol) free energy of system = (1) + (5) 6.961 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds