Wall clock time and date at job start Mon Mar 30 2020 01:04:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50694 * 1 3 3 C 1.38875 * 119.24712 * 2 1 4 4 C 1.36884 * 119.80665 * 179.97438 * 3 2 1 5 5 C 1.41124 * 118.40045 * 359.73262 * 4 3 2 6 6 C 1.40864 * 120.72329 * 180.26491 * 5 4 3 7 7 H 1.08002 * 119.99836 * 205.16719 * 6 5 4 8 8 C 1.40062 * 119.99867 * 25.16238 * 6 5 4 9 9 N 1.30773 * 120.00107 * 15.99122 * 8 6 5 10 10 Si 1.86797 * 119.99808 * 195.98884 * 8 6 5 11 11 H 1.48501 * 109.47310 * 90.00202 * 10 8 6 12 12 H 1.48503 * 109.47178 * 210.00396 * 10 8 6 13 13 H 1.48498 * 109.47375 * 330.00044 * 10 8 6 14 14 C 1.41906 * 118.55643 * 0.50430 * 5 4 3 15 15 C 1.47728 * 119.99718 * 179.75866 * 14 5 4 16 16 C 1.40039 * 120.58280 * 236.63553 * 15 14 5 17 17 C 1.50698 * 120.84198 * 0.03519 * 16 15 14 18 18 C 1.38345 * 118.31299 * 180.02562 * 16 15 14 19 19 C 1.38346 * 119.38630 * 359.97438 * 18 16 15 20 20 N 1.31958 * 121.13987 * 359.97438 * 19 18 16 21 21 C 1.31887 * 121.84591 * 0.02562 * 20 19 18 22 22 F 1.35112 * 119.76086 * 180.02562 * 21 20 19 23 23 N 1.31740 * 119.24336 * 179.97438 * 2 1 3 24 24 H 1.08995 * 109.47305 * 270.02439 * 1 2 3 25 25 H 1.09004 * 109.47049 * 30.01826 * 1 2 3 26 26 H 1.09002 * 109.47627 * 150.01523 * 1 2 3 27 27 H 1.07990 * 120.09382 * 0.02562 * 3 2 1 28 28 H 1.07997 * 120.80090 * 180.02562 * 4 3 2 29 29 H 0.97004 * 120.00244 * 179.97438 * 9 8 6 30 30 H 1.09005 * 109.47178 * 270.08127 * 17 16 15 31 31 H 1.09001 * 109.47110 * 30.08472 * 17 16 15 32 32 H 1.08998 * 109.47131 * 150.08265 * 17 16 15 33 33 H 1.08000 * 120.30853 * 179.71543 * 18 16 15 34 34 H 1.08001 * 119.43119 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.1854 1.2117 0.0000 4 6 3.5542 1.2251 0.0005 5 6 4.2375 -0.0097 0.0069 6 6 5.6455 -0.0530 0.0133 7 1 6.1610 -0.9168 -0.3799 8 6 6.3769 1.0242 0.5295 9 7 5.7848 1.9173 1.2791 10 14 8.1983 1.1850 0.1472 11 1 8.3752 1.9814 -1.0937 12 1 8.8824 1.8672 1.2749 13 1 8.7852 -0.1656 -0.0436 14 6 3.4755 -1.2067 0.0014 15 6 4.1581 -2.5169 0.0024 16 6 3.9039 -3.4534 -1.0072 17 6 2.9310 -3.1484 -2.1169 18 6 4.5688 -4.6657 -0.9601 19 6 5.4560 -4.9137 0.0720 20 7 5.6790 -4.0140 1.0112 21 6 5.0712 -2.8436 1.0120 22 9 5.3315 -1.9533 1.9944 23 7 2.1505 -1.1495 0.0005 24 1 -0.3634 0.0004 1.0276 25 1 -0.3633 0.8899 -0.5141 26 1 -0.3634 -0.8901 -0.5136 27 1 1.6348 2.1407 0.0004 28 1 4.0981 2.1581 0.0010 29 1 6.2914 2.6631 1.6369 30 1 1.9320 -3.4706 -1.8231 31 1 2.9247 -2.0756 -2.3099 32 1 3.2327 -3.6783 -3.0204 33 1 4.3936 -5.4133 -1.7196 34 1 5.9751 -5.8600 0.1097 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001243551665.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:04:23 Heat of formation + Delta-G solvation = -9.432768 kcal Electronic energy + Delta-G solvation = -20756.199140 eV Core-core repulsion = 17567.053077 eV Total energy + Delta-G solvation = -3189.146063 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 272.102 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -49.72792 -41.13986 -40.01014 -36.19852 -35.24357 -33.44874 -32.63728 -30.99138 -29.63056 -28.77533 -26.29912 -24.81460 -23.24635 -22.48946 -22.16527 -19.32966 -18.29802 -18.18562 -17.50666 -17.29263 -16.78122 -16.12031 -15.80733 -15.48947 -14.95006 -14.57469 -14.50868 -14.42713 -14.14387 -13.60507 -13.51429 -13.44043 -13.33951 -13.24552 -13.03827 -12.73406 -12.64114 -12.58348 -12.25548 -11.77304 -11.23282 -10.71778 -10.49489 -10.16385 -9.97239 -9.76418 -9.21798 -8.75619 -6.45571 -0.03632 0.21715 0.77904 1.05322 1.29187 1.41479 1.43802 2.10318 2.60745 2.73680 2.79594 3.53337 3.65099 3.77295 3.91283 4.20986 4.33746 4.42154 4.60488 4.63026 4.73799 4.81241 4.87525 4.94020 4.95130 4.99984 5.02960 5.11246 5.24341 5.26624 5.32355 5.51235 5.72729 5.81150 5.93046 6.02513 6.42815 6.67029 6.73869 6.81024 7.67871 8.14826 Molecular weight = 272.10amu Principal moments of inertia in cm(-1) A = 0.012847 B = 0.010620 C = 0.006692 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2179.022525 B = 2635.803680 C = 4182.994749 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 C -0.019 4.019 3 C -0.143 4.143 4 C -0.151 4.151 5 C 0.058 3.942 6 C -0.450 4.450 7 H 0.064 0.936 8 C 0.041 3.959 9 N -0.806 5.806 10 Si 0.972 3.028 11 H -0.251 1.251 12 H -0.262 1.262 13 H -0.267 1.267 14 C 0.000 4.000 15 C -0.076 4.076 16 C -0.022 4.022 17 C -0.094 4.094 18 C -0.172 4.172 19 C 0.117 3.883 20 N -0.547 5.547 21 C 0.288 3.712 22 F -0.125 7.125 23 N -0.451 5.451 24 H 0.059 0.941 25 H 0.079 0.921 26 H 0.064 0.936 27 H 0.129 0.871 28 H 0.118 0.882 29 H 0.294 0.706 30 H 0.083 0.917 31 H 0.042 0.958 32 H 0.100 0.900 33 H 0.188 0.812 34 H 0.207 0.793 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.258 -7.093 -6.279 9.739 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C -0.161 4.161 3 C -0.163 4.163 4 C -0.177 4.177 5 C 0.054 3.946 6 C -0.479 4.479 7 H 0.082 0.918 8 C -0.176 4.176 9 N -0.431 5.431 10 Si 0.793 3.207 11 H -0.175 1.175 12 H -0.187 1.187 13 H -0.191 1.191 14 C -0.138 4.138 15 C -0.080 4.080 16 C -0.030 4.030 17 C -0.150 4.150 18 C -0.191 4.191 19 C -0.040 4.040 20 N -0.263 5.263 21 C 0.136 3.864 22 F -0.104 7.104 23 N -0.159 5.159 24 H 0.078 0.922 25 H 0.098 0.902 26 H 0.083 0.917 27 H 0.146 0.854 28 H 0.135 0.865 29 H 0.105 0.895 30 H 0.102 0.898 31 H 0.061 0.939 32 H 0.119 0.881 33 H 0.205 0.795 34 H 0.223 0.777 Dipole moment (debyes) X Y Z Total from point charges -2.109 -7.755 -5.414 9.690 hybrid contribution 0.937 1.814 0.081 2.043 sum -1.172 -5.941 -5.333 8.069 Atomic orbital electron populations 1.20331 0.87823 1.02614 1.01697 1.21078 0.97268 0.87952 1.09819 1.21585 0.94699 0.98816 1.01208 1.21464 0.93884 0.98199 1.04115 1.18595 0.94567 0.91779 0.89671 1.19448 0.91336 1.02510 1.34558 0.91783 1.26704 1.05555 0.93654 0.91712 1.69778 1.40785 1.10811 1.21682 0.85337 0.76133 0.79570 0.79707 1.17490 1.18665 1.19113 1.19221 0.88961 0.90839 1.14787 1.19182 0.97991 0.95116 0.95739 1.20759 0.95642 0.92517 0.94128 1.20658 0.97443 1.01655 0.95257 1.22362 0.97887 0.97257 1.01606 1.23229 0.95233 0.97426 0.88083 1.66943 1.26952 1.01979 1.30407 1.18559 0.95089 0.86235 0.86551 1.91578 1.92720 1.65651 1.60474 1.66949 1.08853 1.29999 1.10140 0.92190 0.90215 0.91716 0.85354 0.86460 0.89479 0.89834 0.93894 0.88115 0.79497 0.77694 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -2.20 10.15 71.23 0.72 -1.47 16 2 C -0.02 -0.82 6.79 42.72 0.29 -0.53 16 3 C -0.14 -6.49 9.64 22.10 0.21 -6.28 16 4 C -0.15 -7.80 8.74 22.66 0.20 -7.61 16 5 C 0.06 3.17 5.37 -21.02 -0.11 3.06 16 6 C -0.45 -24.32 6.74 23.36 0.16 -24.17 16 7 H 0.06 3.52 6.81 -2.91 -0.02 3.50 16 8 C 0.04 2.09 5.20 85.29 0.44 2.53 16 9 N -0.81 -41.50 10.93 21.85 0.24 -41.26 16 10 Si 0.97 38.87 29.59 68.60 2.03 40.89 16 11 H -0.25 -9.38 7.11 99.48 0.71 -8.67 16 12 H -0.26 -9.92 7.11 99.48 0.71 -9.21 16 13 H -0.27 -10.91 7.11 99.48 0.71 -10.20 16 14 C 0.00 -0.01 5.00 42.44 0.21 0.20 16 15 C -0.08 -3.49 4.85 -19.91 -0.10 -3.59 16 16 C -0.02 -0.79 5.95 -19.40 -0.12 -0.91 16 17 C -0.09 -2.86 9.24 71.24 0.66 -2.20 16 18 C -0.17 -4.61 9.80 22.32 0.22 -4.40 16 19 C 0.12 3.41 11.17 84.70 0.95 4.35 16 20 N -0.55 -22.30 10.36 -195.65 -2.03 -24.33 16 21 C 0.29 13.77 7.30 85.11 0.62 14.39 16 22 F -0.13 -6.79 15.25 44.97 0.69 -6.11 16 23 N -0.45 -21.60 9.39 -171.17 -1.61 -23.20 16 24 H 0.06 1.86 8.14 -2.39 -0.02 1.84 16 25 H 0.08 2.17 8.07 -2.38 -0.02 2.15 16 26 H 0.06 1.99 8.14 -2.39 -0.02 1.97 16 27 H 0.13 4.91 8.06 -2.92 -0.02 4.89 16 28 H 0.12 6.20 6.24 -2.91 -0.02 6.18 16 29 H 0.29 13.59 8.30 -92.70 -0.77 12.82 16 30 H 0.08 2.43 8.14 -2.38 -0.02 2.41 16 31 H 0.04 1.58 7.04 -2.39 -0.02 1.56 16 32 H 0.10 2.21 8.10 -2.39 -0.02 2.19 16 33 H 0.19 3.00 8.06 -2.91 -0.02 2.98 16 34 H 0.21 3.81 8.06 -2.91 -0.02 3.78 16 Total: -1.00 -67.24 295.93 4.81 -62.44 By element: Atomic # 1 Polarization: 17.05 SS G_CDS: 1.13 Total: 18.18 kcal Atomic # 6 Polarization: -30.97 SS G_CDS: 4.36 Total: -26.61 kcal Atomic # 7 Polarization: -85.40 SS G_CDS: -3.40 Total: -88.79 kcal Atomic # 9 Polarization: -6.79 SS G_CDS: 0.69 Total: -6.11 kcal Atomic # 14 Polarization: 38.87 SS G_CDS: 2.03 Total: 40.89 kcal Total: -67.24 4.81 -62.44 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001243551665.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 53.005 kcal (2) G-P(sol) polarization free energy of solvation -67.243 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.239 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.806 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.437 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.433 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds