Wall clock time and date at job start Mon Mar 30 2020 01:02:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50694 * 1 3 3 C 1.38865 * 119.24621 * 2 1 4 4 C 1.36890 * 119.80262 * 179.70182 * 3 2 1 5 5 C 1.41121 * 118.39827 * 0.55429 * 4 3 2 6 6 C 1.40874 * 120.72279 * 179.70800 * 5 4 3 7 7 H 1.08001 * 120.00086 * 149.12097 * 6 5 4 8 8 C 1.40066 * 119.99833 * 329.11566 * 6 5 4 9 9 N 1.30780 * 120.00055 * 348.72316 * 8 6 5 10 10 Si 1.86802 * 119.99853 * 168.71961 * 8 6 5 11 11 H 1.48505 * 109.46975 * 60.00179 * 10 8 6 12 12 H 1.48496 * 109.46947 * 180.02562 * 10 8 6 13 13 H 1.48505 * 109.47005 * 300.00604 * 10 8 6 14 14 C 1.41895 * 118.55663 * 359.73456 * 5 4 3 15 15 C 1.47777 * 119.99005 * 179.97438 * 14 5 4 16 16 C 1.39644 * 120.53827 * 309.77509 * 15 14 5 17 17 N 1.31673 * 120.57808 * 179.97438 * 16 15 14 18 18 C 1.32162 * 121.84747 * 0.02562 * 17 16 15 19 19 F 1.35101 * 119.48052 * 179.97438 * 18 17 16 20 20 C 1.38716 * 121.03544 * 359.97438 * 18 17 16 21 21 C 1.38196 * 119.29409 * 359.72815 * 20 18 17 22 22 C 1.50697 * 120.83983 * 180.27819 * 21 20 18 23 23 N 1.31743 * 119.24748 * 180.27341 * 2 1 3 24 24 H 1.08999 * 109.47346 * 269.73431 * 1 2 3 25 25 H 1.08997 * 109.47377 * 149.73013 * 1 2 3 26 26 H 1.09008 * 109.46940 * 29.73008 * 1 2 3 27 27 H 1.07998 * 120.10150 * 359.97385 * 3 2 1 28 28 H 1.07994 * 120.80254 * 180.28434 * 4 3 2 29 29 H 0.97000 * 119.99719 * 179.97438 * 9 8 6 30 30 H 1.07995 * 119.70717 * 0.03415 * 16 15 14 31 31 H 1.07999 * 120.35047 * 180.02562 * 20 18 17 32 32 H 1.09007 * 109.47256 * 264.99440 * 22 21 20 33 33 H 1.09004 * 109.47655 * 24.98760 * 22 21 20 34 34 H 1.08998 * 109.47395 * 144.99537 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.1854 1.2116 0.0000 4 6 3.5542 1.2249 0.0062 5 6 4.2374 -0.0098 0.0004 6 6 5.6455 -0.0533 0.0002 7 1 6.1605 -0.8745 0.4764 8 6 6.3775 0.9686 -0.6177 9 7 5.7690 1.8402 -1.3795 10 14 8.2230 1.0864 -0.3536 11 1 8.8722 -0.1603 -0.8329 12 1 8.7583 2.2464 -1.1106 13 1 8.5055 1.2669 1.0931 14 6 3.4753 -1.2067 -0.0057 15 6 4.1582 -2.5172 -0.0124 16 6 5.1685 -2.7861 -0.9382 17 7 5.7778 -3.9534 -0.9446 18 6 5.4638 -4.9087 -0.0870 19 9 6.1197 -6.0887 -0.1366 20 6 4.4712 -4.7187 0.8633 21 6 3.8066 -3.5081 0.9142 22 6 2.7269 -3.2620 1.9363 23 7 2.1506 -1.1495 -0.0055 24 1 -0.3634 -0.0048 1.0276 25 1 -0.3634 -0.8875 -0.5180 26 1 -0.3633 0.8925 -0.5097 27 1 1.6348 2.1407 -0.0004 28 1 4.0982 2.1579 0.0109 29 1 6.2760 2.5481 -1.8071 30 1 5.4532 -2.0298 -1.6545 31 1 4.2238 -5.5069 1.5590 32 1 1.7535 -3.4773 1.4956 33 1 2.8871 -3.9106 2.7976 34 1 2.7590 -2.2201 2.2550 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001243756888.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:02:15 Heat of formation + Delta-G solvation = 1.715446 kcal Electronic energy + Delta-G solvation = -20276.066843 eV Core-core repulsion = 17087.404203 eV Total energy + Delta-G solvation = -3188.662640 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 272.102 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -48.52658 -39.75442 -38.31286 -34.46033 -33.70448 -32.09459 -30.94917 -29.41905 -28.00567 -27.32454 -24.68201 -23.20111 -21.98903 -20.82058 -20.48123 -17.51330 -16.97733 -16.76424 -15.79513 -15.68970 -15.49161 -14.56507 -14.10561 -13.87037 -13.58804 -13.20928 -13.12349 -13.07039 -12.51947 -12.20065 -12.12871 -11.86589 -11.82452 -11.65134 -11.53529 -11.29772 -11.15077 -11.05904 -10.67485 -10.04276 -9.51814 -9.19189 -9.09660 -8.66854 -8.24196 -8.13877 -7.46849 -7.00598 -4.66810 1.38107 1.66632 2.47039 2.80027 2.94793 2.98522 3.06329 3.74921 4.12580 4.16945 4.40505 4.96397 5.18161 5.28766 5.33569 5.49554 5.73357 5.86744 5.93584 6.08797 6.10349 6.23691 6.29284 6.35108 6.38763 6.42686 6.50465 6.65816 6.79919 6.85001 6.97419 7.05985 7.21905 7.51400 7.64896 7.75807 8.19523 8.26908 8.45725 8.51181 9.39744 9.88723 Molecular weight = 272.10amu Principal moments of inertia in cm(-1) A = 0.012004 B = 0.009416 C = 0.005651 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2332.002658 B = 2972.962950 C = 4953.737885 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 C -0.003 4.003 3 C -0.141 4.141 4 C -0.120 4.120 5 C 0.089 3.911 6 C -0.444 4.444 7 H 0.084 0.916 8 C 0.077 3.923 9 N -0.786 5.786 10 Si 0.909 3.091 11 H -0.259 1.259 12 H -0.275 1.275 13 H -0.262 1.262 14 C 0.016 3.984 15 C -0.030 4.030 16 C 0.159 3.841 17 N -0.521 5.521 18 C 0.276 3.724 19 F -0.127 7.127 20 C -0.201 4.201 21 C -0.016 4.016 22 C -0.098 4.098 23 N -0.444 5.444 24 H 0.050 0.950 25 H 0.056 0.944 26 H 0.053 0.947 27 H 0.100 0.900 28 H 0.126 0.874 29 H 0.287 0.713 30 H 0.173 0.827 31 H 0.137 0.863 32 H 0.080 0.920 33 H 0.057 0.943 34 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.796 -3.174 3.559 5.528 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.146 4.146 3 C -0.161 4.161 4 C -0.146 4.146 5 C 0.084 3.916 6 C -0.473 4.473 7 H 0.102 0.898 8 C -0.143 4.143 9 N -0.410 5.410 10 Si 0.733 3.267 11 H -0.183 1.183 12 H -0.200 1.200 13 H -0.186 1.186 14 C -0.122 4.122 15 C -0.033 4.033 16 C 0.001 3.999 17 N -0.235 5.235 18 C 0.123 3.877 19 F -0.106 7.106 20 C -0.222 4.222 21 C -0.024 4.024 22 C -0.155 4.155 23 N -0.152 5.152 24 H 0.069 0.931 25 H 0.075 0.925 26 H 0.072 0.928 27 H 0.118 0.882 28 H 0.144 0.856 29 H 0.098 0.902 30 H 0.190 0.810 31 H 0.154 0.846 32 H 0.098 0.902 33 H 0.075 0.925 34 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -2.540 -3.949 2.795 5.464 hybrid contribution 0.940 0.966 0.534 1.449 sum -1.599 -2.984 3.329 4.748 Atomic orbital electron populations 1.20295 0.91393 1.01047 1.00514 1.20269 0.94877 0.88450 1.10973 1.21283 0.95414 0.97253 1.02158 1.21387 0.92589 0.98731 1.01880 1.18298 0.94010 0.90674 0.88590 1.19503 0.90946 1.06550 1.30331 0.89790 1.25963 1.01722 0.93879 0.92762 1.69716 1.39068 1.11973 1.20264 0.86297 0.81247 0.79239 0.79907 1.18318 1.20009 1.18601 1.19084 0.88418 0.90348 1.14358 1.19349 0.95971 0.93204 0.94816 1.22825 0.90351 0.90671 0.96020 1.66971 1.29763 1.02024 1.24776 1.18154 0.92201 0.82459 0.94887 1.91541 1.80317 1.42980 1.95759 1.21446 0.99395 0.99502 1.01854 1.20301 0.95344 0.91561 0.95170 1.20648 0.96562 1.02740 0.95531 1.66852 1.09325 1.29262 1.09750 0.93072 0.92534 0.92826 0.88173 0.85636 0.90169 0.81006 0.84554 0.90180 0.92453 0.90741 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -1.23 10.15 36.00 0.37 -0.86 16 2 C 0.00 -0.07 6.79 -82.40 -0.56 -0.63 16 3 C -0.14 -2.98 9.64 -39.84 -0.38 -3.36 16 4 C -0.12 -2.80 8.70 -38.98 -0.34 -3.14 16 5 C 0.09 2.13 5.52 -106.41 -0.59 1.54 16 6 C -0.44 -10.52 7.01 -37.90 -0.27 -10.79 16 7 H 0.08 1.98 6.88 -52.49 -0.36 1.62 16 8 C 0.08 1.74 5.25 -17.31 -0.09 1.65 16 9 N -0.79 -18.30 11.06 55.55 0.61 -17.68 16 10 Si 0.91 17.51 29.58 -169.99 -5.03 12.49 16 11 H -0.26 -5.08 7.11 56.52 0.40 -4.67 16 12 H -0.28 -5.16 7.11 56.52 0.40 -4.75 16 13 H -0.26 -5.03 7.11 56.52 0.40 -4.63 16 14 C 0.02 0.36 5.50 -82.24 -0.45 -0.09 16 15 C -0.03 -0.64 5.07 -104.76 -0.53 -1.17 16 16 C 0.16 3.35 9.29 -17.10 -0.16 3.19 16 17 N -0.52 -10.77 10.36 -13.19 -0.14 -10.91 16 18 C 0.28 5.19 8.41 -17.23 -0.14 5.04 16 19 F -0.13 -2.25 17.29 2.25 0.04 -2.21 16 20 C -0.20 -3.40 9.75 -39.42 -0.38 -3.78 16 21 C -0.02 -0.29 5.95 -103.92 -0.62 -0.91 16 22 C -0.10 -1.58 8.92 36.00 0.32 -1.26 16 23 N -0.44 -9.81 9.00 -5.45 -0.05 -9.86 16 24 H 0.05 0.76 8.14 -51.93 -0.42 0.34 16 25 H 0.06 0.91 8.14 -51.93 -0.42 0.48 16 26 H 0.05 0.78 8.07 -51.92 -0.42 0.36 16 27 H 0.10 1.85 8.06 -52.49 -0.42 1.42 16 28 H 0.13 2.98 6.51 -52.49 -0.34 2.64 16 29 H 0.29 6.13 8.29 -40.82 -0.34 5.79 16 30 H 0.17 3.69 7.33 -52.49 -0.38 3.31 16 31 H 0.14 1.86 8.06 -52.49 -0.42 1.44 16 32 H 0.08 1.26 8.14 -51.93 -0.42 0.84 16 33 H 0.06 0.75 8.07 -51.93 -0.42 0.33 16 34 H 0.07 1.33 7.19 -51.93 -0.37 0.96 16 LS Contribution 297.43 15.07 4.48 4.48 Total: -1.00 -25.31 297.43 -7.45 -32.77 By element: Atomic # 1 Polarization: 9.03 SS G_CDS: -3.55 Total: 5.48 kcal Atomic # 6 Polarization: -10.73 SS G_CDS: -3.83 Total: -14.56 kcal Atomic # 7 Polarization: -38.88 SS G_CDS: 0.43 Total: -38.45 kcal Atomic # 9 Polarization: -2.25 SS G_CDS: 0.04 Total: -2.21 kcal Atomic # 14 Polarization: 17.51 SS G_CDS: -5.03 Total: 12.49 kcal Total LS contribution 4.48 Total: 4.48 kcal Total: -25.31 -7.45 -32.77 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001243756888.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.484 kcal (2) G-P(sol) polarization free energy of solvation -25.315 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.170 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.454 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -32.769 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.715 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds