Wall clock time and date at job start Mon Mar 30 2020 01:02:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50694 * 1 3 3 C 1.38865 * 119.24621 * 2 1 4 4 C 1.36890 * 119.80262 * 179.70182 * 3 2 1 5 5 C 1.41121 * 118.39827 * 0.55429 * 4 3 2 6 6 C 1.40874 * 120.72279 * 179.70800 * 5 4 3 7 7 H 1.08001 * 120.00086 * 149.12097 * 6 5 4 8 8 C 1.40066 * 119.99833 * 329.11566 * 6 5 4 9 9 N 1.30780 * 120.00055 * 348.72316 * 8 6 5 10 10 Si 1.86802 * 119.99853 * 168.71961 * 8 6 5 11 11 H 1.48505 * 109.46975 * 60.00179 * 10 8 6 12 12 H 1.48496 * 109.46947 * 180.02562 * 10 8 6 13 13 H 1.48505 * 109.47005 * 300.00604 * 10 8 6 14 14 C 1.41895 * 118.55663 * 359.73456 * 5 4 3 15 15 C 1.47777 * 119.99005 * 179.97438 * 14 5 4 16 16 C 1.39644 * 120.53827 * 309.77509 * 15 14 5 17 17 N 1.31673 * 120.57808 * 179.97438 * 16 15 14 18 18 C 1.32162 * 121.84747 * 0.02562 * 17 16 15 19 19 F 1.35101 * 119.48052 * 179.97438 * 18 17 16 20 20 C 1.38716 * 121.03544 * 359.97438 * 18 17 16 21 21 C 1.38196 * 119.29409 * 359.72815 * 20 18 17 22 22 C 1.50697 * 120.83983 * 180.27819 * 21 20 18 23 23 N 1.31743 * 119.24748 * 180.27341 * 2 1 3 24 24 H 1.08999 * 109.47346 * 269.73431 * 1 2 3 25 25 H 1.08997 * 109.47377 * 149.73013 * 1 2 3 26 26 H 1.09008 * 109.46940 * 29.73008 * 1 2 3 27 27 H 1.07998 * 120.10150 * 359.97385 * 3 2 1 28 28 H 1.07994 * 120.80254 * 180.28434 * 4 3 2 29 29 H 0.97000 * 119.99719 * 179.97438 * 9 8 6 30 30 H 1.07995 * 119.70717 * 0.03415 * 16 15 14 31 31 H 1.07999 * 120.35047 * 180.02562 * 20 18 17 32 32 H 1.09007 * 109.47256 * 264.99440 * 22 21 20 33 33 H 1.09004 * 109.47655 * 24.98760 * 22 21 20 34 34 H 1.08998 * 109.47395 * 144.99537 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.1854 1.2116 0.0000 4 6 3.5542 1.2249 0.0062 5 6 4.2374 -0.0098 0.0004 6 6 5.6455 -0.0533 0.0002 7 1 6.1605 -0.8745 0.4764 8 6 6.3775 0.9686 -0.6177 9 7 5.7690 1.8402 -1.3795 10 14 8.2230 1.0864 -0.3536 11 1 8.8722 -0.1603 -0.8329 12 1 8.7583 2.2464 -1.1106 13 1 8.5055 1.2669 1.0931 14 6 3.4753 -1.2067 -0.0057 15 6 4.1582 -2.5172 -0.0124 16 6 5.1685 -2.7861 -0.9382 17 7 5.7778 -3.9534 -0.9446 18 6 5.4638 -4.9087 -0.0870 19 9 6.1197 -6.0887 -0.1366 20 6 4.4712 -4.7187 0.8633 21 6 3.8066 -3.5081 0.9142 22 6 2.7269 -3.2620 1.9363 23 7 2.1506 -1.1495 -0.0055 24 1 -0.3634 -0.0048 1.0276 25 1 -0.3634 -0.8875 -0.5180 26 1 -0.3633 0.8925 -0.5097 27 1 1.6348 2.1407 -0.0004 28 1 4.0982 2.1579 0.0109 29 1 6.2760 2.5481 -1.8071 30 1 5.4532 -2.0298 -1.6545 31 1 4.2238 -5.5069 1.5590 32 1 1.7535 -3.4773 1.4956 33 1 2.8871 -3.9106 2.7976 34 1 2.7590 -2.2201 2.2550 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001243756888.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:02:14 Heat of formation + Delta-G solvation = -10.630672 kcal Electronic energy + Delta-G solvation = -20276.602211 eV Core-core repulsion = 17087.404203 eV Total energy + Delta-G solvation = -3189.198008 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 272.102 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -49.97533 -41.32034 -39.95279 -36.15488 -35.20550 -33.66453 -32.64562 -30.94007 -29.55404 -28.78482 -26.29010 -24.80882 -23.51939 -22.46851 -22.07864 -19.25685 -18.44557 -18.28159 -17.41995 -17.26944 -17.00330 -16.20900 -15.70783 -15.38064 -15.09776 -14.67844 -14.61388 -14.49688 -14.10345 -13.66317 -13.58413 -13.41477 -13.37386 -13.17371 -13.03164 -12.73474 -12.65862 -12.61529 -12.21089 -11.72632 -11.20813 -10.74513 -10.56248 -10.28214 -9.95219 -9.78798 -9.15178 -8.69911 -6.43609 -0.16866 0.17780 0.80147 1.07807 1.36123 1.44833 1.47996 2.14557 2.61542 2.62511 2.70865 3.47484 3.57737 3.73439 3.85855 4.08642 4.25710 4.41790 4.56703 4.63140 4.69652 4.79131 4.84334 4.89875 4.94392 5.03008 5.05745 5.14349 5.23254 5.27768 5.35173 5.49783 5.69871 5.81064 5.93485 6.04635 6.46035 6.69424 6.71873 6.78435 7.68666 8.21459 Molecular weight = 272.10amu Principal moments of inertia in cm(-1) A = 0.012004 B = 0.009416 C = 0.005651 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2332.002658 B = 2972.962950 C = 4953.737885 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 C -0.007 4.007 3 C -0.144 4.144 4 C -0.140 4.140 5 C 0.061 3.939 6 C -0.465 4.465 7 H 0.074 0.926 8 C 0.045 3.955 9 N -0.815 5.815 10 Si 0.968 3.032 11 H -0.266 1.266 12 H -0.264 1.264 13 H -0.260 1.260 14 C 0.012 3.988 15 C -0.053 4.053 16 C 0.150 3.850 17 N -0.542 5.542 18 C 0.271 3.729 19 F -0.119 7.119 20 C -0.181 4.181 21 C -0.015 4.015 22 C -0.091 4.091 23 N -0.453 5.453 24 H 0.071 0.929 25 H 0.059 0.941 26 H 0.074 0.926 27 H 0.128 0.872 28 H 0.113 0.887 29 H 0.293 0.707 30 H 0.154 0.846 31 H 0.181 0.819 32 H 0.085 0.915 33 H 0.094 0.906 34 H 0.051 0.949 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.879 -4.265 4.758 7.475 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C -0.149 4.149 3 C -0.164 4.164 4 C -0.166 4.166 5 C 0.057 3.943 6 C -0.494 4.494 7 H 0.092 0.908 8 C -0.172 4.172 9 N -0.440 5.440 10 Si 0.789 3.211 11 H -0.190 1.190 12 H -0.188 1.188 13 H -0.184 1.184 14 C -0.126 4.126 15 C -0.056 4.056 16 C -0.007 4.007 17 N -0.257 5.257 18 C 0.118 3.882 19 F -0.099 7.099 20 C -0.201 4.201 21 C -0.023 4.023 22 C -0.148 4.148 23 N -0.161 5.161 24 H 0.089 0.911 25 H 0.078 0.922 26 H 0.093 0.907 27 H 0.146 0.854 28 H 0.131 0.869 29 H 0.104 0.896 30 H 0.171 0.829 31 H 0.198 0.802 32 H 0.104 0.896 33 H 0.113 0.887 34 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -3.635 -5.035 3.992 7.383 hybrid contribution 1.153 1.208 0.174 1.679 sum -2.482 -3.827 4.167 6.178 Atomic orbital electron populations 1.20362 0.87921 1.02317 1.02175 1.21085 0.97223 0.87934 1.08658 1.21599 0.94758 0.98839 1.01247 1.21417 0.93742 0.98176 1.03255 1.18588 0.94602 0.91534 0.89588 1.19499 0.91222 1.07097 1.31607 0.90806 1.26570 1.05086 0.93352 0.92181 1.69750 1.40463 1.12689 1.21105 0.85433 0.76805 0.79048 0.79793 1.19035 1.18787 1.18390 1.19347 0.88860 0.90873 1.13526 1.19418 0.96527 0.93515 0.96139 1.22501 0.91070 0.90739 0.96438 1.66867 1.30433 1.02356 1.26049 1.18408 0.92615 0.82264 0.94918 1.91561 1.80254 1.42347 1.95709 1.21768 0.97412 0.99721 1.01237 1.20624 0.95657 0.91269 0.94746 1.20650 0.95838 1.02205 0.96077 1.66980 1.08925 1.29872 1.10356 0.91078 0.92169 0.90688 0.85421 0.86865 0.89628 0.82855 0.80189 0.89631 0.88690 0.92971 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -2.10 10.15 71.23 0.72 -1.38 16 2 C -0.01 -0.26 6.79 42.72 0.29 0.03 16 3 C -0.14 -6.04 9.64 22.10 0.21 -5.83 16 4 C -0.14 -6.69 8.70 22.66 0.20 -6.50 16 5 C 0.06 3.04 5.52 -21.02 -0.12 2.93 16 6 C -0.46 -23.00 7.01 23.36 0.16 -22.83 16 7 H 0.07 3.67 6.88 -2.91 -0.02 3.65 16 8 C 0.05 2.11 5.25 85.29 0.45 2.56 16 9 N -0.81 -39.23 11.06 21.85 0.24 -38.99 16 10 Si 0.97 36.80 29.58 68.60 2.03 38.83 16 11 H -0.27 -10.29 7.11 99.48 0.71 -9.58 16 12 H -0.26 -9.43 7.11 99.48 0.71 -8.72 16 13 H -0.26 -9.69 7.11 99.48 0.71 -8.98 16 14 C 0.01 0.54 5.50 42.46 0.23 0.77 16 15 C -0.05 -2.25 5.07 -19.95 -0.10 -2.35 16 16 C 0.15 6.50 9.29 85.06 0.79 7.29 16 17 N -0.54 -22.53 10.36 -195.66 -2.03 -24.55 16 18 C 0.27 9.76 8.41 84.76 0.71 10.47 16 19 F -0.12 -3.99 17.29 44.97 0.78 -3.21 16 20 C -0.18 -5.58 9.75 22.37 0.22 -5.36 16 21 C -0.01 -0.52 5.95 -19.41 -0.12 -0.64 16 22 C -0.09 -2.70 8.92 71.23 0.64 -2.06 16 23 N -0.45 -19.82 9.00 -171.16 -1.54 -21.36 16 24 H 0.07 1.87 8.14 -2.39 -0.02 1.85 16 25 H 0.06 1.76 8.14 -2.39 -0.02 1.75 16 26 H 0.07 1.93 8.07 -2.38 -0.02 1.91 16 27 H 0.13 4.50 8.06 -2.91 -0.02 4.48 16 28 H 0.11 5.60 6.51 -2.91 -0.02 5.58 16 29 H 0.29 12.84 8.29 -92.71 -0.77 12.07 16 30 H 0.15 7.07 7.33 -2.91 -0.02 7.05 16 31 H 0.18 3.96 8.06 -2.91 -0.02 3.94 16 32 H 0.09 2.46 8.14 -2.38 -0.02 2.44 16 33 H 0.09 2.08 8.07 -2.39 -0.02 2.06 16 34 H 0.05 1.79 7.19 -2.39 -0.02 1.77 16 Total: -1.00 -55.82 297.43 4.90 -50.92 By element: Atomic # 1 Polarization: 20.13 SS G_CDS: 1.13 Total: 21.26 kcal Atomic # 6 Polarization: -27.19 SS G_CDS: 4.29 Total: -22.90 kcal Atomic # 7 Polarization: -81.58 SS G_CDS: -3.32 Total: -84.90 kcal Atomic # 9 Polarization: -3.99 SS G_CDS: 0.78 Total: -3.21 kcal Atomic # 14 Polarization: 36.80 SS G_CDS: 2.03 Total: 38.83 kcal Total: -55.82 4.90 -50.92 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001243756888.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.288 kcal (2) G-P(sol) polarization free energy of solvation -55.823 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.535 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.905 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -50.919 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.631 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds