Wall clock time and date at job start Mon Mar 30 2020 01:04:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50693 * 1 3 3 C 1.38213 * 120.84156 * 2 1 4 4 C 1.38705 * 119.29522 * 179.72647 * 3 2 1 5 5 F 1.35098 * 119.49045 * 180.29982 * 4 3 2 6 6 N 1.32150 * 121.01765 * 0.27439 * 4 3 2 7 7 C 1.31687 * 121.84421 * 359.97438 * 6 4 3 8 8 C 1.39584 * 120.58680 * 359.97438 * 7 6 4 9 9 C 1.47918 * 120.52942 * 179.97438 * 8 7 6 10 10 C 1.39924 * 119.45581 * 6.31106 * 9 8 7 11 11 C 1.36579 * 119.46685 * 180.02562 * 10 9 8 12 12 C 1.41319 * 118.41738 * 0.02562 * 11 10 9 13 13 C 1.41044 * 120.55142 * 180.02562 * 12 11 10 14 14 H 1.08003 * 120.00007 * 154.37086 * 13 12 11 15 15 C 1.40017 * 120.00156 * 334.36436 * 13 12 11 16 16 N 1.30802 * 119.99753 * 342.57689 * 15 13 12 17 17 Si 1.86799 * 120.00089 * 162.57282 * 15 13 12 18 18 H 1.48492 * 109.47039 * 0.02562 * 17 15 13 19 19 H 1.48498 * 109.47212 * 120.00331 * 17 15 13 20 20 H 1.48497 * 109.46880 * 240.00295 * 17 15 13 21 21 C 1.40946 * 118.89366 * 359.97438 * 12 11 10 22 22 C 1.50703 * 119.79367 * 180.02562 * 21 12 11 23 23 N 1.31268 * 120.40443 * 359.72518 * 21 12 11 24 24 H 1.09001 * 109.47233 * 96.79324 * 1 2 3 25 25 H 1.09000 * 109.47329 * 216.79234 * 1 2 3 26 26 H 1.08999 * 109.47218 * 336.79573 * 1 2 3 27 27 H 1.08007 * 120.34909 * 359.97438 * 3 2 1 28 28 H 1.07994 * 119.70858 * 179.97438 * 7 6 4 29 29 H 1.07997 * 120.26300 * 359.97413 * 10 9 8 30 30 H 1.08002 * 120.79496 * 179.97438 * 11 10 9 31 31 H 0.96998 * 119.99966 * 179.97438 * 16 15 13 32 32 H 1.08998 * 109.47416 * 90.00290 * 22 21 12 33 33 H 1.09009 * 109.46647 * 210.00127 * 22 21 12 34 34 H 1.08998 * 109.47346 * 329.99388 * 22 21 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.2155 1.1867 0.0000 4 6 3.6020 1.1493 0.0058 5 9 4.2986 2.3068 0.0120 6 7 4.2522 -0.0012 0.0058 7 6 3.6202 -1.1565 0.0010 8 6 2.2251 -1.2028 -0.0040 9 6 1.5164 -2.5012 -0.0100 10 6 2.2493 -3.6857 0.1231 11 6 1.5952 -4.8847 0.1171 12 6 0.1892 -4.8831 -0.0254 13 6 -0.5316 -6.0954 -0.0371 14 1 -1.5682 -6.1102 0.2658 15 6 0.0966 -7.2796 -0.4414 16 7 1.2133 -7.2285 -1.1205 17 14 -0.6601 -8.9323 -0.0109 18 1 -1.9136 -8.7181 0.7557 19 1 -0.9647 -9.6774 -1.2588 20 1 0.2964 -9.7153 0.8120 21 6 -0.4808 -3.6498 -0.1547 22 6 -1.9799 -3.6244 -0.3072 23 7 0.1924 -2.5230 -0.1371 24 1 -0.3634 -0.1216 -1.0204 25 1 -0.3634 -0.8230 0.6155 26 1 -0.3633 0.9445 0.4049 27 1 1.6950 2.1331 -0.0004 28 1 4.1861 -2.0762 0.0008 29 1 3.3235 -3.6521 0.2290 30 1 2.1396 -5.8120 0.2179 31 1 1.6487 -8.0489 -1.4004 32 1 -2.4444 -3.5672 0.6772 33 1 -2.2703 -2.7550 -0.8971 34 1 -2.3091 -4.5325 -0.8122 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001243758327.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:04:26 Heat of formation + Delta-G solvation = 9.368087 kcal Electronic energy + Delta-G solvation = -19799.786567 eV Core-core repulsion = 16611.455771 eV Total energy + Delta-G solvation = -3188.330797 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 272.102 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -48.61752 -39.87796 -38.40996 -34.65591 -33.52038 -32.46781 -30.96607 -29.75143 -27.67063 -27.05751 -25.21593 -23.33783 -21.98851 -20.87086 -20.39287 -17.65345 -17.10247 -16.81154 -15.97146 -15.68633 -15.49943 -14.81805 -14.34410 -13.75868 -13.68570 -13.34793 -13.21907 -12.93251 -12.50367 -12.18176 -12.13541 -12.09820 -11.75788 -11.64277 -11.50581 -11.35040 -11.19967 -10.90786 -10.73366 -10.03477 -9.68745 -9.28107 -9.19814 -8.80090 -8.41194 -8.10511 -7.42101 -7.12284 -4.69766 1.10982 1.52664 2.47943 2.77326 2.86638 2.91388 2.99512 3.62333 3.97378 3.99485 4.41868 4.86181 5.08522 5.20702 5.31908 5.37048 5.60972 5.89201 6.00664 6.01834 6.18552 6.24110 6.29515 6.38892 6.46239 6.49958 6.63423 6.69176 6.74666 6.91414 6.97613 7.08806 7.14449 7.48817 7.62169 7.70101 8.06510 8.15012 8.34557 8.45006 9.36083 9.71943 Molecular weight = 272.10amu Principal moments of inertia in cm(-1) A = 0.035668 B = 0.004463 C = 0.004014 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 784.824340 B = 6271.957520 C = 6974.279382 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.104 4.104 2 C -0.017 4.017 3 C -0.191 4.191 4 C 0.263 3.737 5 F -0.126 7.126 6 N -0.513 5.513 7 C 0.115 3.885 8 C -0.038 4.038 9 C -0.005 4.005 10 C -0.121 4.121 11 C -0.140 4.140 12 C 0.075 3.925 13 C -0.424 4.424 14 H 0.092 0.908 15 C 0.071 3.929 16 N -0.769 5.769 17 Si 0.915 3.085 18 H -0.256 1.256 19 H -0.270 1.270 20 H -0.268 1.268 21 C 0.007 3.993 22 C -0.073 4.073 23 N -0.437 5.437 24 H 0.074 0.926 25 H 0.108 0.892 26 H 0.044 0.956 27 H 0.138 0.862 28 H 0.164 0.836 29 H 0.103 0.897 30 H 0.126 0.874 31 H 0.289 0.711 32 H 0.049 0.951 33 H 0.051 0.949 34 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.666 4.273 1.545 4.839 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C -0.025 4.025 3 C -0.212 4.212 4 C 0.110 3.890 5 F -0.106 7.106 6 N -0.227 5.227 7 C -0.043 4.043 8 C -0.041 4.041 9 C -0.138 4.138 10 C -0.142 4.142 11 C -0.165 4.165 12 C 0.070 3.930 13 C -0.452 4.452 14 H 0.110 0.890 15 C -0.151 4.151 16 N -0.392 5.392 17 Si 0.738 3.262 18 H -0.179 1.179 19 H -0.195 1.195 20 H -0.193 1.193 21 C -0.139 4.139 22 C -0.130 4.130 23 N -0.146 5.146 24 H 0.092 0.908 25 H 0.126 0.874 26 H 0.063 0.937 27 H 0.156 0.844 28 H 0.181 0.819 29 H 0.121 0.879 30 H 0.144 0.856 31 H 0.100 0.900 32 H 0.068 0.932 33 H 0.070 0.930 34 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -0.974 4.975 1.340 5.244 hybrid contribution -0.203 -1.376 0.108 1.395 sum -1.177 3.599 1.449 4.054 Atomic orbital electron populations 1.21022 0.88949 1.02204 1.03824 1.20317 0.97689 0.90559 0.93945 1.21564 0.92387 1.00027 1.07260 1.18061 0.86791 0.81523 1.02598 1.91542 1.80399 1.44704 1.93937 1.66836 1.42163 0.97844 1.15871 1.22527 0.91091 0.93868 0.96807 1.19604 0.93204 0.93015 0.98292 1.18399 0.89389 0.89770 1.16252 1.21243 0.98619 0.93300 1.01024 1.21271 0.94840 0.96710 1.03652 1.18441 0.92673 0.93240 0.88606 1.19804 0.99004 0.91158 1.35198 0.89007 1.26140 0.94409 1.02250 0.92277 1.69784 1.14987 1.31605 1.22788 0.86124 0.80511 0.80018 0.79541 1.17884 1.19532 1.19300 1.21064 0.95516 0.88203 1.09104 1.20273 0.90868 1.01459 1.00407 1.66931 1.07441 1.30077 1.10113 0.90762 0.87366 0.93694 0.84449 0.81885 0.87941 0.85638 0.89997 0.93202 0.93025 0.91407 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.66 8.66 36.00 0.31 -1.35 16 2 C -0.02 -0.30 5.95 -103.94 -0.62 -0.92 16 3 C -0.19 -3.06 9.75 -39.42 -0.38 -3.45 16 4 C 0.26 4.61 8.41 -17.24 -0.14 4.47 16 5 F -0.13 -2.11 17.29 2.25 0.04 -2.07 16 6 N -0.51 -9.56 10.36 -13.21 -0.14 -9.70 16 7 C 0.12 2.09 10.58 -17.11 -0.18 1.91 16 8 C -0.04 -0.73 5.89 -104.74 -0.62 -1.35 16 9 C 0.00 -0.10 6.69 -82.75 -0.55 -0.65 16 10 C -0.12 -2.60 9.38 -39.55 -0.37 -2.97 16 11 C -0.14 -3.26 8.73 -39.01 -0.34 -3.61 16 12 C 0.08 1.78 5.57 -106.64 -0.59 1.19 16 13 C -0.42 -9.64 8.12 -37.85 -0.31 -9.95 16 14 H 0.09 1.96 6.88 -52.48 -0.36 1.60 16 15 C 0.07 1.54 5.16 -17.32 -0.09 1.45 16 16 N -0.77 -17.44 11.04 55.55 0.61 -16.82 16 17 Si 0.91 16.16 29.59 -169.99 -5.03 11.13 16 18 H -0.26 -4.46 7.11 56.52 0.40 -4.05 16 19 H -0.27 -4.75 7.11 56.52 0.40 -4.35 16 20 H -0.27 -4.72 7.11 56.52 0.40 -4.32 16 21 C 0.01 0.16 6.86 -81.81 -0.56 -0.40 16 22 C -0.07 -1.34 9.58 36.01 0.34 -1.00 16 23 N -0.44 -9.49 6.25 -5.40 -0.03 -9.52 16 24 H 0.07 1.20 8.14 -51.93 -0.42 0.78 16 25 H 0.11 1.95 5.77 -51.93 -0.30 1.65 16 26 H 0.04 0.59 8.06 -51.93 -0.42 0.18 16 27 H 0.14 1.80 8.06 -52.48 -0.42 1.37 16 28 H 0.16 2.65 6.22 -52.49 -0.33 2.33 16 29 H 0.10 1.91 6.22 -52.49 -0.33 1.58 16 30 H 0.13 2.96 6.32 -52.49 -0.33 2.63 16 31 H 0.29 5.89 8.30 -40.82 -0.34 5.55 16 32 H 0.05 0.84 8.14 -51.93 -0.42 0.42 16 33 H 0.05 0.88 8.14 -51.92 -0.42 0.46 16 34 H 0.07 1.23 6.77 -51.93 -0.35 0.88 16 LS Contribution 292.19 15.07 4.40 4.40 Total: -1.00 -24.99 292.19 -7.49 -32.48 By element: Atomic # 1 Polarization: 9.95 SS G_CDS: -3.24 Total: 6.71 kcal Atomic # 6 Polarization: -12.51 SS G_CDS: -4.11 Total: -16.62 kcal Atomic # 7 Polarization: -36.48 SS G_CDS: 0.44 Total: -36.04 kcal Atomic # 9 Polarization: -2.11 SS G_CDS: 0.04 Total: -2.07 kcal Atomic # 14 Polarization: 16.16 SS G_CDS: -5.03 Total: 11.13 kcal Total LS contribution 4.40 Total: 4.40 kcal Total: -24.99 -7.49 -32.48 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001243758327.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.851 kcal (2) G-P(sol) polarization free energy of solvation -24.990 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 16.861 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.493 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -32.482 kcal (6) G-S(sol) free energy of system = (1) + (5) 9.368 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds