Wall clock time and date at job start Mon Mar 30 2020 01:04:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50693 * 1 3 3 C 1.38213 * 120.84156 * 2 1 4 4 C 1.38705 * 119.29522 * 179.72647 * 3 2 1 5 5 F 1.35098 * 119.49045 * 180.29982 * 4 3 2 6 6 N 1.32150 * 121.01765 * 0.27439 * 4 3 2 7 7 C 1.31687 * 121.84421 * 359.97438 * 6 4 3 8 8 C 1.39584 * 120.58680 * 359.97438 * 7 6 4 9 9 C 1.47918 * 120.52942 * 179.97438 * 8 7 6 10 10 C 1.39924 * 119.45581 * 6.31106 * 9 8 7 11 11 C 1.36579 * 119.46685 * 180.02562 * 10 9 8 12 12 C 1.41319 * 118.41738 * 0.02562 * 11 10 9 13 13 C 1.41044 * 120.55142 * 180.02562 * 12 11 10 14 14 H 1.08003 * 120.00007 * 154.37086 * 13 12 11 15 15 C 1.40017 * 120.00156 * 334.36436 * 13 12 11 16 16 N 1.30802 * 119.99753 * 342.57689 * 15 13 12 17 17 Si 1.86799 * 120.00089 * 162.57282 * 15 13 12 18 18 H 1.48492 * 109.47039 * 0.02562 * 17 15 13 19 19 H 1.48498 * 109.47212 * 120.00331 * 17 15 13 20 20 H 1.48497 * 109.46880 * 240.00295 * 17 15 13 21 21 C 1.40946 * 118.89366 * 359.97438 * 12 11 10 22 22 C 1.50703 * 119.79367 * 180.02562 * 21 12 11 23 23 N 1.31268 * 120.40443 * 359.72518 * 21 12 11 24 24 H 1.09001 * 109.47233 * 96.79324 * 1 2 3 25 25 H 1.09000 * 109.47329 * 216.79234 * 1 2 3 26 26 H 1.08999 * 109.47218 * 336.79573 * 1 2 3 27 27 H 1.08007 * 120.34909 * 359.97438 * 3 2 1 28 28 H 1.07994 * 119.70858 * 179.97438 * 7 6 4 29 29 H 1.07997 * 120.26300 * 359.97413 * 10 9 8 30 30 H 1.08002 * 120.79496 * 179.97438 * 11 10 9 31 31 H 0.96998 * 119.99966 * 179.97438 * 16 15 13 32 32 H 1.08998 * 109.47416 * 90.00290 * 22 21 12 33 33 H 1.09009 * 109.46647 * 210.00127 * 22 21 12 34 34 H 1.08998 * 109.47346 * 329.99388 * 22 21 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.2155 1.1867 0.0000 4 6 3.6020 1.1493 0.0058 5 9 4.2986 2.3068 0.0120 6 7 4.2522 -0.0012 0.0058 7 6 3.6202 -1.1565 0.0010 8 6 2.2251 -1.2028 -0.0040 9 6 1.5164 -2.5012 -0.0100 10 6 2.2493 -3.6857 0.1231 11 6 1.5952 -4.8847 0.1171 12 6 0.1892 -4.8831 -0.0254 13 6 -0.5316 -6.0954 -0.0371 14 1 -1.5682 -6.1102 0.2658 15 6 0.0966 -7.2796 -0.4414 16 7 1.2133 -7.2285 -1.1205 17 14 -0.6601 -8.9323 -0.0109 18 1 -1.9136 -8.7181 0.7557 19 1 -0.9647 -9.6774 -1.2588 20 1 0.2964 -9.7153 0.8120 21 6 -0.4808 -3.6498 -0.1547 22 6 -1.9799 -3.6244 -0.3072 23 7 0.1924 -2.5230 -0.1371 24 1 -0.3634 -0.1216 -1.0204 25 1 -0.3634 -0.8230 0.6155 26 1 -0.3633 0.9445 0.4049 27 1 1.6950 2.1331 -0.0004 28 1 4.1861 -2.0762 0.0008 29 1 3.3235 -3.6521 0.2290 30 1 2.1396 -5.8120 0.2179 31 1 1.6487 -8.0489 -1.4004 32 1 -2.4444 -3.5672 0.6772 33 1 -2.2703 -2.7550 -0.8971 34 1 -2.3091 -4.5325 -0.8122 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001243758327.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:04:25 Heat of formation + Delta-G solvation = -1.822190 kcal Electronic energy + Delta-G solvation = -19800.271814 eV Core-core repulsion = 16611.455771 eV Total energy + Delta-G solvation = -3188.816044 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 272.102 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -49.97388 -41.34515 -40.00204 -36.25687 -34.95480 -34.03031 -32.59639 -31.25278 -29.05653 -28.62228 -26.77735 -24.82923 -23.49053 -22.40176 -21.99664 -19.31776 -18.47060 -18.24510 -17.50989 -17.05643 -17.02834 -16.42113 -15.79829 -15.25089 -15.15552 -14.75673 -14.69460 -14.38345 -13.99034 -13.66004 -13.57413 -13.45093 -13.34871 -13.11231 -12.95847 -12.84456 -12.68111 -12.41312 -12.14513 -11.63825 -11.27508 -10.69567 -10.58987 -10.30804 -10.06424 -9.74975 -9.05085 -8.73544 -6.40242 -0.33967 0.15184 0.88760 1.09883 1.41156 1.52369 1.56454 2.15521 2.48984 2.61534 2.84083 3.48857 3.61241 3.68555 3.84900 3.97582 4.18381 4.44886 4.58316 4.62644 4.68342 4.78891 4.92024 4.95733 4.98981 5.02774 5.06032 5.15096 5.26052 5.37891 5.53661 5.59008 5.67037 5.84462 5.97796 6.01565 6.46373 6.64563 6.67723 6.77305 7.67015 8.14230 Molecular weight = 272.10amu Principal moments of inertia in cm(-1) A = 0.035668 B = 0.004463 C = 0.004014 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 784.824340 B = 6271.957520 C = 6974.279382 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.099 4.099 2 C -0.018 4.018 3 C -0.178 4.178 4 C 0.262 3.738 5 F -0.121 7.121 6 N -0.532 5.532 7 C 0.119 3.881 8 C -0.062 4.062 9 C -0.009 4.009 10 C -0.129 4.129 11 C -0.162 4.162 12 C 0.047 3.953 13 C -0.450 4.450 14 H 0.098 0.902 15 C 0.036 3.964 16 N -0.804 5.804 17 Si 0.985 3.015 18 H -0.250 1.250 19 H -0.266 1.266 20 H -0.267 1.267 21 C -0.011 4.011 22 C -0.065 4.065 23 N -0.437 5.437 24 H 0.072 0.928 25 H 0.088 0.912 26 H 0.078 0.922 27 H 0.175 0.825 28 H 0.175 0.825 29 H 0.124 0.876 30 H 0.113 0.887 31 H 0.295 0.705 32 H 0.064 0.936 33 H 0.064 0.936 34 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.372 5.502 1.788 6.252 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C -0.026 4.026 3 C -0.199 4.199 4 C 0.109 3.891 5 F -0.100 7.100 6 N -0.246 5.246 7 C -0.039 4.039 8 C -0.065 4.065 9 C -0.143 4.143 10 C -0.149 4.149 11 C -0.187 4.187 12 C 0.042 3.958 13 C -0.478 4.478 14 H 0.116 0.884 15 C -0.183 4.183 16 N -0.428 5.428 17 Si 0.805 3.195 18 H -0.173 1.173 19 H -0.191 1.191 20 H -0.191 1.191 21 C -0.157 4.157 22 C -0.123 4.123 23 N -0.146 5.146 24 H 0.090 0.910 25 H 0.106 0.894 26 H 0.097 0.903 27 H 0.192 0.808 28 H 0.192 0.808 29 H 0.142 0.858 30 H 0.131 0.869 31 H 0.106 0.894 32 H 0.082 0.918 33 H 0.083 0.917 34 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -1.683 6.222 1.583 6.637 hybrid contribution 0.130 -1.520 0.029 1.526 sum -1.554 4.702 1.612 5.207 Atomic orbital electron populations 1.20958 0.87834 1.03236 1.03453 1.20581 0.98577 0.90444 0.92965 1.21817 0.91655 1.00951 1.05450 1.18339 0.87550 0.81403 1.01779 1.91561 1.80410 1.44268 1.93788 1.66852 1.42702 0.98322 1.16766 1.22661 0.90877 0.94304 0.96034 1.19643 0.93733 0.92819 1.00341 1.18811 0.89630 0.90763 1.15121 1.21491 0.99851 0.92938 1.00605 1.21294 0.95261 0.96919 1.05247 1.18796 0.93119 0.94404 0.89503 1.20034 0.99539 0.91742 1.36449 0.88368 1.26934 0.94601 1.05268 0.91503 1.69829 1.16343 1.32819 1.23801 0.85090 0.79662 0.75537 0.79226 1.17339 1.19094 1.19128 1.21628 0.97285 0.87978 1.08767 1.20260 0.88635 1.01951 1.01438 1.67081 1.07536 1.29710 1.10252 0.90962 0.89364 0.90337 0.80790 0.80804 0.85824 0.86877 0.89365 0.91764 0.91709 0.91550 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -2.92 8.66 71.23 0.62 -2.30 16 2 C -0.02 -0.57 5.95 -19.42 -0.12 -0.69 16 3 C -0.18 -5.10 9.75 22.38 0.22 -4.88 16 4 C 0.26 8.51 8.41 84.76 0.71 9.22 16 5 F -0.12 -3.71 17.29 44.97 0.78 -2.93 16 6 N -0.53 -18.93 10.36 -195.72 -2.03 -20.96 16 7 C 0.12 4.19 10.58 85.04 0.90 5.09 16 8 C -0.06 -2.33 5.89 -19.94 -0.12 -2.45 16 9 C -0.01 -0.40 6.69 41.94 0.28 -0.12 16 10 C -0.13 -5.62 9.38 22.29 0.21 -5.41 16 11 C -0.16 -7.83 8.73 22.64 0.20 -7.63 16 12 C 0.05 2.26 5.57 -21.17 -0.12 2.14 16 13 C -0.45 -20.90 8.12 23.39 0.19 -20.71 16 14 H 0.10 4.25 6.88 -2.91 -0.02 4.23 16 15 C 0.04 1.56 5.16 85.28 0.44 2.00 16 16 N -0.80 -37.48 11.04 21.84 0.24 -37.24 16 17 Si 0.98 33.14 29.59 68.60 2.03 35.17 16 18 H -0.25 -8.11 7.11 99.48 0.71 -7.41 16 19 H -0.27 -8.70 7.11 99.48 0.71 -8.00 16 20 H -0.27 -8.81 7.11 99.48 0.71 -8.10 16 21 C -0.01 -0.49 6.86 43.31 0.30 -0.19 16 22 C -0.07 -2.38 9.58 71.24 0.68 -1.70 16 23 N -0.44 -18.92 6.25 -170.98 -1.07 -19.99 16 24 H 0.07 2.18 8.14 -2.39 -0.02 2.16 16 25 H 0.09 3.04 5.77 -2.39 -0.01 3.03 16 26 H 0.08 1.78 8.06 -2.39 -0.02 1.76 16 27 H 0.17 3.68 8.06 -2.91 -0.02 3.65 16 28 H 0.18 5.54 6.22 -2.91 -0.02 5.52 16 29 H 0.12 4.66 6.22 -2.91 -0.02 4.64 16 30 H 0.11 5.61 6.32 -2.91 -0.02 5.59 16 31 H 0.30 12.34 8.30 -92.71 -0.77 11.57 16 32 H 0.06 2.12 8.14 -2.39 -0.02 2.10 16 33 H 0.06 2.14 8.14 -2.38 -0.02 2.12 16 34 H 0.07 2.40 6.77 -2.39 -0.02 2.39 16 Total: -1.00 -53.80 292.19 5.49 -48.31 By element: Atomic # 1 Polarization: 24.11 SS G_CDS: 1.15 Total: 25.25 kcal Atomic # 6 Polarization: -32.01 SS G_CDS: 4.39 Total: -27.62 kcal Atomic # 7 Polarization: -75.33 SS G_CDS: -2.86 Total: -78.19 kcal Atomic # 9 Polarization: -3.71 SS G_CDS: 0.78 Total: -2.93 kcal Atomic # 14 Polarization: 33.14 SS G_CDS: 2.03 Total: 35.17 kcal Total: -53.80 5.49 -48.31 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001243758327.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.491 kcal (2) G-P(sol) polarization free energy of solvation -53.805 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -7.314 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.491 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -48.313 kcal (6) G-S(sol) free energy of system = (1) + (5) -1.822 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds