Wall clock time and date at job start Mon Mar 30 2020 01:03:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 N 1.31248 * 119.80448 * 2 1 4 4 C 1.32984 * 121.73905 * 180.02562 * 3 2 1 5 5 C 1.48053 * 119.45032 * 179.97438 * 4 3 2 6 6 C 1.40049 * 120.91323 * 173.31656 * 5 4 3 7 7 C 1.37872 * 119.05632 * 180.02562 * 6 5 4 8 8 N 1.31983 * 120.94042 * 0.02562 * 7 6 5 9 9 C 1.32074 * 122.02523 * 359.97438 * 8 7 6 10 10 F 1.35101 * 119.58492 * 180.02562 * 9 8 7 11 11 C 1.38340 * 120.83140 * 359.72158 * 9 8 7 12 12 C 1.50704 * 120.51707 * 180.28491 * 11 9 8 13 13 C 1.39842 * 121.10795 * 0.02562 * 4 3 2 14 14 C 1.36659 * 119.46587 * 359.97438 * 13 4 3 15 15 C 1.40969 * 119.79629 * 180.02562 * 2 1 3 16 16 C 1.41061 * 120.56090 * 0.24919 * 15 2 1 17 17 H 1.07999 * 119.99438 * 331.25796 * 16 15 2 18 18 C 1.40072 * 120.00286 * 151.25796 * 16 15 2 19 19 N 1.30752 * 120.00220 * 164.58809 * 18 16 15 20 20 Si 1.86803 * 119.99897 * 344.58736 * 18 16 15 21 21 H 1.48494 * 109.47324 * 92.77496 * 20 18 16 22 22 H 1.48495 * 109.47111 * 212.78040 * 20 18 16 23 23 H 1.48502 * 109.47075 * 332.77567 * 20 18 16 24 24 H 1.09004 * 109.47142 * 269.97368 * 1 2 3 25 25 H 1.09002 * 109.47076 * 29.97137 * 1 2 3 26 26 H 1.08994 * 109.47611 * 149.97294 * 1 2 3 27 27 H 1.08004 * 120.47531 * 0.02562 * 6 5 4 28 28 H 1.08005 * 119.52882 * 179.97438 * 7 6 5 29 29 H 1.09005 * 109.46919 * 264.30946 * 12 11 9 30 30 H 1.08994 * 109.46852 * 24.30729 * 12 11 9 31 31 H 1.09002 * 109.47330 * 144.31247 * 12 11 9 32 32 H 1.08000 * 120.26834 * 179.97438 * 13 4 3 33 33 H 1.07997 * 120.79503 * 180.02562 * 14 13 4 34 34 H 0.96996 * 120.00077 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.1593 1.1389 0.0000 4 6 3.4884 1.1838 -0.0005 5 6 4.1724 2.4968 -0.0011 6 6 5.5632 2.5836 0.1382 7 6 6.1605 3.8263 0.1331 8 7 5.4407 4.9245 -0.0001 9 6 4.1273 4.8892 -0.1342 10 9 3.4391 6.0441 -0.2677 11 6 3.4479 3.6841 -0.1458 12 6 1.9498 3.6517 -0.3056 13 6 4.2509 0.0115 -0.0016 14 6 3.6201 -1.2008 -0.0016 15 6 2.2075 -1.2233 -0.0005 16 6 1.5098 -2.4493 -0.0064 17 1 0.5283 -2.5141 0.4395 18 6 2.0900 -3.5826 -0.5905 19 7 1.6010 -4.7694 -0.3413 20 14 3.5622 -3.3984 -1.7254 21 1 4.8140 -3.5411 -0.9394 22 1 3.5135 -4.4488 -2.7738 23 1 3.5295 -2.0586 -2.3651 24 1 -0.3633 -0.0005 1.0277 25 1 -0.3633 0.8903 -0.5134 26 1 -0.3634 -0.8897 -0.5142 27 1 6.1596 1.6899 0.2482 28 1 7.2325 3.9021 0.2404 29 1 1.4808 3.5940 0.6767 30 1 1.6189 4.5575 -0.8135 31 1 1.6660 2.7801 -0.8955 32 1 5.3296 0.0638 -0.0024 33 1 4.1878 -2.1195 -0.0020 34 1 2.0030 -5.5542 -0.7455 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001243774279.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:03:00 Heat of formation + Delta-G solvation = 1.399911 kcal Electronic energy + Delta-G solvation = -20045.119179 eV Core-core repulsion = 16856.442856 eV Total energy + Delta-G solvation = -3188.676323 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 272.102 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -50.02253 -41.38361 -40.20342 -36.31238 -34.95776 -34.02221 -32.96813 -32.06911 -28.99976 -28.47202 -26.97986 -24.57071 -23.70265 -22.88506 -21.97409 -19.61244 -18.86083 -18.24511 -17.52513 -17.14102 -16.73208 -16.54574 -16.01710 -15.42658 -15.29679 -14.82587 -14.78837 -14.53295 -14.34068 -14.00137 -13.68104 -13.55397 -13.49043 -13.15856 -13.10532 -12.88337 -12.65584 -12.49635 -12.06964 -11.75066 -11.45822 -10.89434 -10.73832 -10.30127 -9.84641 -9.72080 -9.30922 -9.07485 -6.60053 -0.32795 0.00364 0.70945 0.87734 1.23023 1.37867 1.44453 2.01550 2.42458 2.61954 2.77612 3.35434 3.44494 3.65089 3.88011 3.94469 4.12696 4.22373 4.41640 4.52008 4.59082 4.69355 4.81811 4.86495 4.89416 4.96567 4.98393 5.00014 5.05635 5.27796 5.43647 5.51488 5.54238 5.69587 5.74490 5.88401 6.13753 6.44680 6.57129 6.69999 7.49689 7.95626 Molecular weight = 272.10amu Principal moments of inertia in cm(-1) A = 0.029110 B = 0.005365 C = 0.004694 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 961.621960 B = 5217.641269 C = 5963.949092 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 C 0.013 3.987 3 N -0.433 5.433 4 C -0.019 4.019 5 C 0.053 3.947 6 C -0.182 4.182 7 C 0.133 3.867 8 N -0.546 5.546 9 C 0.283 3.717 10 F -0.122 7.122 11 C -0.159 4.159 12 C -0.093 4.093 13 C -0.091 4.091 14 C -0.231 4.231 15 C 0.037 3.963 16 C -0.429 4.429 17 H 0.082 0.918 18 C 0.051 3.949 19 N -0.813 5.813 20 Si 0.962 3.038 21 H -0.250 1.250 22 H -0.275 1.275 23 H -0.258 1.258 24 H 0.062 0.938 25 H 0.070 0.930 26 H 0.066 0.934 27 H 0.168 0.832 28 H 0.206 0.794 29 H 0.066 0.934 30 H 0.059 0.941 31 H 0.092 0.908 32 H 0.147 0.853 33 H 0.118 0.882 34 H 0.303 0.697 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.591 7.202 -1.114 9.826 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C -0.134 4.134 3 N -0.142 5.142 4 C -0.150 4.150 5 C 0.045 3.955 6 C -0.202 4.202 7 C -0.022 4.022 8 N -0.261 5.261 9 C 0.131 3.869 10 F -0.101 7.101 11 C -0.164 4.164 12 C -0.150 4.150 13 C -0.110 4.110 14 C -0.255 4.255 15 C 0.031 3.969 16 C -0.457 4.457 17 H 0.100 0.900 18 C -0.169 4.169 19 N -0.436 5.436 20 Si 0.786 3.214 21 H -0.175 1.175 22 H -0.202 1.202 23 H -0.182 1.182 24 H 0.080 0.920 25 H 0.089 0.911 26 H 0.085 0.915 27 H 0.186 0.814 28 H 0.223 0.777 29 H 0.085 0.915 30 H 0.078 0.922 31 H 0.110 0.890 32 H 0.164 0.836 33 H 0.136 0.864 34 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges 6.478 8.538 -1.118 10.776 hybrid contribution 0.094 -1.718 -0.244 1.738 sum 6.572 6.820 -1.362 9.568 Atomic orbital electron populations 1.20318 0.88631 1.02225 1.01697 1.21537 0.96957 0.87398 1.07549 1.67128 1.08927 1.29148 1.09021 1.18985 0.89321 0.91178 1.15550 1.18863 0.93256 0.90544 0.92825 1.22513 0.93324 1.01007 1.03370 1.22918 1.00992 0.85111 0.93177 1.66939 1.05743 1.35831 1.17627 1.17959 0.87546 0.80884 1.00518 1.91536 1.77647 1.47933 1.92990 1.20825 0.99374 0.91175 1.04992 1.20783 0.88650 1.02826 1.02778 1.21522 1.00856 0.91864 0.96801 1.21237 0.94459 0.97847 1.11931 1.18740 0.92859 0.94421 0.90853 1.19640 1.03957 0.91746 1.30377 0.89986 1.26909 0.99685 0.93745 0.96533 1.69621 1.39068 1.00198 1.34717 0.85545 0.78306 0.79193 0.78390 1.17467 1.20158 1.18234 0.91951 0.91146 0.91514 0.81436 0.77706 0.91501 0.92233 0.88975 0.83569 0.86450 0.88633 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 19. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -2.65 9.59 71.23 0.68 -1.96 16 2 C 0.01 0.57 6.86 43.31 0.30 0.87 16 3 N -0.43 -18.05 6.27 -170.95 -1.07 -19.12 16 4 C -0.02 -0.73 6.68 41.96 0.28 -0.45 16 5 C 0.05 1.82 5.90 -19.85 -0.12 1.70 16 6 C -0.18 -4.77 9.48 22.62 0.21 -4.56 16 7 C 0.13 3.22 11.17 84.58 0.94 4.16 16 8 N -0.55 -16.88 10.36 -197.21 -2.04 -18.92 16 9 C 0.28 9.47 8.36 84.68 0.71 10.18 16 10 F -0.12 -4.02 16.42 44.97 0.74 -3.28 16 11 C -0.16 -5.49 5.94 -19.45 -0.12 -5.61 16 12 C -0.09 -3.11 8.56 71.24 0.61 -2.50 16 13 C -0.09 -3.38 9.40 22.29 0.21 -3.17 16 14 C -0.23 -9.71 7.14 22.65 0.16 -9.55 16 15 C 0.04 1.68 5.18 -21.17 -0.11 1.57 16 16 C -0.43 -20.72 8.60 23.41 0.20 -20.52 16 17 H 0.08 4.17 7.16 -2.91 -0.02 4.15 16 18 C 0.05 2.38 5.46 85.30 0.47 2.84 16 19 N -0.81 -38.57 13.92 21.85 0.30 -38.27 16 20 Si 0.96 37.29 24.42 68.60 1.68 38.96 16 21 H -0.25 -8.94 6.60 99.48 0.66 -8.28 16 22 H -0.28 -10.08 7.11 99.48 0.71 -9.37 16 23 H -0.26 -10.57 6.77 99.48 0.67 -9.89 16 24 H 0.06 2.18 8.14 -2.39 -0.02 2.16 16 25 H 0.07 2.33 8.14 -2.39 -0.02 2.32 16 26 H 0.07 2.52 6.82 -2.39 -0.02 2.51 16 27 H 0.17 3.39 6.34 -2.91 -0.02 3.37 16 28 H 0.21 3.01 8.06 -2.91 -0.02 2.99 16 29 H 0.07 2.24 8.14 -2.38 -0.02 2.22 16 30 H 0.06 1.77 7.50 -2.39 -0.02 1.75 16 31 H 0.09 3.37 5.71 -2.39 -0.01 3.35 16 32 H 0.15 4.22 6.29 -2.91 -0.02 4.20 16 33 H 0.12 4.75 4.36 -2.91 -0.01 4.74 16 34 H 0.30 12.78 8.29 -92.71 -0.77 12.01 16 Total: -1.00 -54.53 285.13 5.10 -49.43 By element: Atomic # 1 Polarization: 17.14 SS G_CDS: 1.07 Total: 18.21 kcal Atomic # 6 Polarization: -31.44 SS G_CDS: 4.43 Total: -27.00 kcal Atomic # 7 Polarization: -73.50 SS G_CDS: -2.81 Total: -76.31 kcal Atomic # 9 Polarization: -4.02 SS G_CDS: 0.74 Total: -3.28 kcal Atomic # 14 Polarization: 37.29 SS G_CDS: 1.68 Total: 38.96 kcal Total: -54.53 5.10 -49.43 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001243774279.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.830 kcal (2) G-P(sol) polarization free energy of solvation -54.534 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.704 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.104 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -49.430 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.400 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds