Wall clock time and date at job start Mon Mar 30 2020 01:06:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 C 1.37915 * 120.47055 * 2 1 4 4 N 1.31957 * 120.93819 * 179.97438 * 3 2 1 5 5 C 1.32106 * 122.01963 * 359.97438 * 4 3 2 6 6 F 1.35102 * 119.57627 * 179.97438 * 5 4 3 7 7 C 1.38292 * 120.83835 * 359.71735 * 5 4 3 8 8 C 1.39877 * 118.96968 * 0.55629 * 7 5 4 9 9 C 1.48049 * 120.90879 * 179.73536 * 8 7 5 10 10 C 1.39836 * 119.44936 * 353.15833 * 9 8 7 11 11 C 1.36661 * 119.46720 * 180.02562 * 10 9 8 12 12 C 1.41273 * 118.40543 * 0.02562 * 11 10 9 13 13 C 1.41064 * 120.55352 * 179.72547 * 12 11 10 14 14 H 1.08000 * 119.99728 * 153.74698 * 13 12 11 15 15 C 1.40073 * 120.00082 * 333.74305 * 13 12 11 16 16 N 1.30747 * 120.00369 * 346.96324 * 15 13 12 17 17 Si 1.86801 * 119.99718 * 166.96127 * 15 13 12 18 18 H 1.48509 * 109.47031 * 90.00288 * 17 15 13 19 19 H 1.48506 * 109.46910 * 209.99766 * 17 15 13 20 20 H 1.48496 * 109.47528 * 330.00271 * 17 15 13 21 21 C 1.40965 * 118.88419 * 0.02562 * 12 11 10 22 22 C 1.50706 * 119.79839 * 179.97438 * 21 12 11 23 23 N 1.31245 * 120.39770 * 359.97438 * 21 12 11 24 24 H 1.08999 * 109.46516 * 263.57966 * 1 2 3 25 25 H 1.09003 * 109.47031 * 23.57881 * 1 2 3 26 26 H 1.08996 * 109.46954 * 143.58425 * 1 2 3 27 27 H 1.08001 * 119.53344 * 0.02562 * 3 2 1 28 28 H 1.08000 * 120.51275 * 180.30558 * 7 5 4 29 29 H 1.07997 * 120.26178 * 0.02562 * 10 9 8 30 30 H 1.08003 * 120.79345 * 180.02562 * 11 10 9 31 31 H 0.97003 * 120.00871 * 179.97438 * 16 15 13 32 32 H 1.08991 * 109.47389 * 89.99568 * 22 21 12 33 33 H 1.09000 * 109.46600 * 210.00036 * 22 21 12 34 34 H 1.09006 * 109.46797 * 329.99542 * 22 21 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2064 1.1887 0.0000 4 7 3.5259 1.1994 0.0005 5 6 4.2355 0.0851 0.0015 6 9 5.5848 0.1537 0.0015 7 6 3.6147 -1.1506 0.0080 8 6 2.2170 -1.2067 0.0016 9 6 1.5081 -2.5064 0.0022 10 6 2.2409 -3.6893 -0.1358 11 6 1.5868 -4.8892 -0.1358 12 6 0.1810 -4.8883 0.0045 13 6 -0.5404 -6.1005 0.0047 14 1 -1.4916 -6.1627 0.5124 15 6 -0.0231 -7.2235 -0.6536 16 7 0.9858 -7.0928 -1.4749 17 14 -0.7747 -8.9079 -0.3581 18 1 -1.8641 -9.1430 -1.3396 19 1 0.2699 -9.9511 -0.5187 20 1 -1.3275 -8.9687 1.0188 21 6 -0.4892 -3.6554 0.1379 22 6 -1.9885 -3.6303 0.2882 23 7 0.1847 -2.5291 0.1319 24 1 -0.3632 -0.1149 1.0212 25 1 -0.3633 0.9419 -0.4111 26 1 -0.3633 -0.8270 -0.6100 27 1 1.6665 2.1240 0.0004 28 1 4.1999 -2.0583 0.0138 29 1 3.3151 -3.6549 -0.2415 30 1 2.1315 -5.8159 -0.2405 31 1 1.3443 -7.8705 -1.9306 32 1 -2.2485 -3.6797 1.3455 33 1 -2.3812 -2.7081 -0.1400 34 1 -2.4201 -4.4853 -0.2324 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001243783952.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:06:17 Heat of formation + Delta-G solvation = 9.808887 kcal Electronic energy + Delta-G solvation = -19851.695301 eV Core-core repulsion = 16663.383619 eV Total energy + Delta-G solvation = -3188.311682 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 272.102 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -48.61654 -39.85518 -38.47041 -34.71639 -33.22951 -32.39241 -30.95543 -30.46728 -27.17978 -26.69302 -25.53246 -23.42465 -21.97154 -20.89547 -20.41481 -17.74020 -17.37684 -16.79091 -15.69570 -15.65899 -15.06770 -14.60486 -14.53807 -14.04183 -13.73813 -13.44703 -13.18506 -13.00583 -12.75659 -12.10327 -11.88284 -11.85315 -11.77745 -11.59434 -11.46830 -11.33864 -11.24447 -10.97869 -10.77196 -10.01698 -9.78670 -9.36904 -9.32197 -8.48692 -8.39294 -8.06149 -7.53397 -7.15013 -4.76309 1.24540 1.37999 2.50849 2.76353 2.84488 2.88205 3.01046 3.59997 3.98552 3.99340 4.40408 4.83029 5.14066 5.31268 5.33663 5.39218 5.66112 5.82174 6.04599 6.10414 6.19830 6.21426 6.36734 6.39890 6.45440 6.48990 6.61706 6.68097 6.75613 6.93971 7.01631 7.10984 7.14659 7.46735 7.60266 7.69214 8.06269 8.11963 8.31204 8.41218 9.32528 9.70066 Molecular weight = 272.10amu Principal moments of inertia in cm(-1) A = 0.028845 B = 0.004794 C = 0.004171 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 970.474939 B = 5838.974542 C = 6711.116094 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.097 4.097 2 C -0.141 4.141 3 C 0.124 3.876 4 N -0.538 5.538 5 C 0.293 3.707 6 F -0.124 7.124 7 C -0.208 4.208 8 C 0.084 3.916 9 C -0.018 4.018 10 C -0.116 4.116 11 C -0.142 4.142 12 C 0.077 3.923 13 C -0.419 4.419 14 H 0.092 0.908 15 C 0.069 3.931 16 N -0.771 5.771 17 Si 0.918 3.082 18 H -0.264 1.264 19 H -0.272 1.272 20 H -0.256 1.256 21 C 0.009 3.991 22 C -0.073 4.073 23 N -0.430 5.430 24 H 0.067 0.933 25 H 0.042 0.958 26 H 0.104 0.896 27 H 0.158 0.842 28 H 0.142 0.858 29 H 0.102 0.898 30 H 0.130 0.870 31 H 0.290 0.710 32 H 0.050 0.950 33 H 0.052 0.948 34 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.237 3.296 1.376 3.780 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.144 4.144 3 C -0.031 4.031 4 N -0.254 5.254 5 C 0.140 3.860 6 F -0.103 7.103 7 C -0.230 4.230 8 C 0.076 3.924 9 C -0.150 4.150 10 C -0.136 4.136 11 C -0.166 4.166 12 C 0.072 3.928 13 C -0.448 4.448 14 H 0.110 0.890 15 C -0.153 4.153 16 N -0.394 5.394 17 Si 0.741 3.259 18 H -0.189 1.189 19 H -0.197 1.197 20 H -0.180 1.180 21 C -0.138 4.138 22 C -0.130 4.130 23 N -0.139 5.139 24 H 0.085 0.915 25 H 0.061 0.939 26 H 0.122 0.878 27 H 0.175 0.825 28 H 0.160 0.840 29 H 0.120 0.880 30 H 0.148 0.852 31 H 0.101 0.899 32 H 0.069 0.931 33 H 0.071 0.929 34 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -0.967 4.736 1.282 5.000 hybrid contribution 0.384 -2.379 -0.106 2.412 sum -0.582 2.357 1.176 2.698 Atomic orbital electron populations 1.20882 0.89163 1.02036 1.03278 1.21057 0.98644 0.92370 1.02357 1.22181 0.87368 0.97685 0.95868 1.66824 1.09524 1.30710 1.18307 1.17865 0.78100 0.89996 0.99999 1.91557 1.27994 1.97055 1.93736 1.21747 0.95226 0.97292 1.08766 1.18730 0.90710 0.92690 0.90313 1.18430 0.89656 0.89835 1.17093 1.21287 0.98791 0.93372 1.00192 1.21372 0.94316 0.96935 1.04017 1.18483 0.92490 0.93170 0.88706 1.19816 1.05123 0.93526 1.26288 0.89010 1.26164 0.94196 1.02068 0.92838 1.69731 1.19189 1.33336 1.17151 0.86120 0.79693 0.79545 0.80529 1.18930 1.19700 1.17972 1.21102 0.95250 0.87949 1.09506 1.20280 0.90865 1.01382 1.00500 1.66907 1.07378 1.30122 1.09488 0.91451 0.93857 0.87808 0.82521 0.84032 0.87964 0.85204 0.89906 0.93107 0.92933 0.91391 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.56 8.68 36.01 0.31 -1.24 16 2 C -0.14 -2.49 5.93 -104.08 -0.62 -3.11 16 3 C 0.12 2.02 10.82 -17.62 -0.19 1.83 16 4 N -0.54 -9.74 10.36 -13.69 -0.14 -9.89 16 5 C 0.29 5.33 8.40 -17.41 -0.15 5.18 16 6 F -0.12 -2.17 17.29 2.25 0.04 -2.13 16 7 C -0.21 -3.79 9.45 -38.95 -0.37 -4.16 16 8 C 0.08 1.64 5.90 -104.60 -0.62 1.02 16 9 C -0.02 -0.39 6.69 -82.74 -0.55 -0.94 16 10 C -0.12 -2.53 9.39 -39.55 -0.37 -2.91 16 11 C -0.14 -3.34 8.72 -39.00 -0.34 -3.68 16 12 C 0.08 1.82 5.58 -106.64 -0.60 1.22 16 13 C -0.42 -9.50 8.13 -37.82 -0.31 -9.81 16 14 H 0.09 1.94 6.89 -52.49 -0.36 1.58 16 15 C 0.07 1.49 5.25 -17.33 -0.09 1.40 16 16 N -0.77 -17.45 10.83 55.55 0.60 -16.85 16 17 Si 0.92 16.09 29.58 -169.99 -5.03 11.06 16 18 H -0.26 -4.60 7.11 56.52 0.40 -4.20 16 19 H -0.27 -4.72 7.11 56.52 0.40 -4.32 16 20 H -0.26 -4.45 7.11 56.52 0.40 -4.05 16 21 C 0.01 0.20 6.86 -81.81 -0.56 -0.36 16 22 C -0.07 -1.34 9.58 36.01 0.35 -0.99 16 23 N -0.43 -9.41 6.27 -5.39 -0.03 -9.45 16 24 H 0.07 1.09 8.14 -51.93 -0.42 0.66 16 25 H 0.04 0.57 8.05 -51.93 -0.42 0.15 16 26 H 0.10 1.91 5.73 -51.93 -0.30 1.61 16 27 H 0.16 1.99 8.06 -52.49 -0.42 1.57 16 28 H 0.14 2.37 6.34 -52.49 -0.33 2.04 16 29 H 0.10 1.99 6.29 -52.49 -0.33 1.66 16 30 H 0.13 3.09 6.22 -52.48 -0.33 2.77 16 31 H 0.29 5.92 8.29 -40.82 -0.34 5.58 16 32 H 0.05 0.86 8.14 -51.93 -0.42 0.44 16 33 H 0.05 0.88 8.14 -51.93 -0.42 0.46 16 34 H 0.07 1.22 6.78 -51.93 -0.35 0.87 16 LS Contribution 292.10 15.07 4.40 4.40 Total: -1.00 -25.07 292.10 -7.51 -32.57 By element: Atomic # 1 Polarization: 10.06 SS G_CDS: -3.24 Total: 6.82 kcal Atomic # 6 Polarization: -12.44 SS G_CDS: -4.10 Total: -16.54 kcal Atomic # 7 Polarization: -36.61 SS G_CDS: 0.43 Total: -36.18 kcal Atomic # 9 Polarization: -2.17 SS G_CDS: 0.04 Total: -2.13 kcal Atomic # 14 Polarization: 16.09 SS G_CDS: -5.03 Total: 11.06 kcal Total LS contribution 4.40 Total: 4.40 kcal Total: -25.07 -7.51 -32.57 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001243783952.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.383 kcal (2) G-P(sol) polarization free energy of solvation -25.068 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 17.315 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.507 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -32.574 kcal (6) G-S(sol) free energy of system = (1) + (5) 9.809 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds