Wall clock time and date at job start Mon Mar 30 2020 01:06:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 C 1.37915 * 120.47055 * 2 1 4 4 N 1.31957 * 120.93819 * 179.97438 * 3 2 1 5 5 C 1.32106 * 122.01963 * 359.97438 * 4 3 2 6 6 F 1.35102 * 119.57627 * 179.97438 * 5 4 3 7 7 C 1.38292 * 120.83835 * 359.71735 * 5 4 3 8 8 C 1.39877 * 118.96968 * 0.55629 * 7 5 4 9 9 C 1.48049 * 120.90879 * 179.73536 * 8 7 5 10 10 C 1.39836 * 119.44936 * 353.15833 * 9 8 7 11 11 C 1.36661 * 119.46720 * 180.02562 * 10 9 8 12 12 C 1.41273 * 118.40543 * 0.02562 * 11 10 9 13 13 C 1.41064 * 120.55352 * 179.72547 * 12 11 10 14 14 H 1.08000 * 119.99728 * 153.74698 * 13 12 11 15 15 C 1.40073 * 120.00082 * 333.74305 * 13 12 11 16 16 N 1.30747 * 120.00369 * 346.96324 * 15 13 12 17 17 Si 1.86801 * 119.99718 * 166.96127 * 15 13 12 18 18 H 1.48509 * 109.47031 * 90.00288 * 17 15 13 19 19 H 1.48506 * 109.46910 * 209.99766 * 17 15 13 20 20 H 1.48496 * 109.47528 * 330.00271 * 17 15 13 21 21 C 1.40965 * 118.88419 * 0.02562 * 12 11 10 22 22 C 1.50706 * 119.79839 * 179.97438 * 21 12 11 23 23 N 1.31245 * 120.39770 * 359.97438 * 21 12 11 24 24 H 1.08999 * 109.46516 * 263.57966 * 1 2 3 25 25 H 1.09003 * 109.47031 * 23.57881 * 1 2 3 26 26 H 1.08996 * 109.46954 * 143.58425 * 1 2 3 27 27 H 1.08001 * 119.53344 * 0.02562 * 3 2 1 28 28 H 1.08000 * 120.51275 * 180.30558 * 7 5 4 29 29 H 1.07997 * 120.26178 * 0.02562 * 10 9 8 30 30 H 1.08003 * 120.79345 * 180.02562 * 11 10 9 31 31 H 0.97003 * 120.00871 * 179.97438 * 16 15 13 32 32 H 1.08991 * 109.47389 * 89.99568 * 22 21 12 33 33 H 1.09000 * 109.46600 * 210.00036 * 22 21 12 34 34 H 1.09006 * 109.46797 * 329.99542 * 22 21 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2064 1.1887 0.0000 4 7 3.5259 1.1994 0.0005 5 6 4.2355 0.0851 0.0015 6 9 5.5848 0.1537 0.0015 7 6 3.6147 -1.1506 0.0080 8 6 2.2170 -1.2067 0.0016 9 6 1.5081 -2.5064 0.0022 10 6 2.2409 -3.6893 -0.1358 11 6 1.5868 -4.8892 -0.1358 12 6 0.1810 -4.8883 0.0045 13 6 -0.5404 -6.1005 0.0047 14 1 -1.4916 -6.1627 0.5124 15 6 -0.0231 -7.2235 -0.6536 16 7 0.9858 -7.0928 -1.4749 17 14 -0.7747 -8.9079 -0.3581 18 1 -1.8641 -9.1430 -1.3396 19 1 0.2699 -9.9511 -0.5187 20 1 -1.3275 -8.9687 1.0188 21 6 -0.4892 -3.6554 0.1379 22 6 -1.9885 -3.6303 0.2882 23 7 0.1847 -2.5291 0.1319 24 1 -0.3632 -0.1149 1.0212 25 1 -0.3633 0.9419 -0.4111 26 1 -0.3633 -0.8270 -0.6100 27 1 1.6665 2.1240 0.0004 28 1 4.1999 -2.0583 0.0138 29 1 3.3151 -3.6549 -0.2415 30 1 2.1315 -5.8159 -0.2405 31 1 1.3443 -7.8705 -1.9306 32 1 -2.2485 -3.6797 1.3455 33 1 -2.3812 -2.7081 -0.1400 34 1 -2.4201 -4.4853 -0.2324 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001243783952.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:06:16 Heat of formation + Delta-G solvation = -1.500074 kcal Electronic energy + Delta-G solvation = -19852.185695 eV Core-core repulsion = 16663.383619 eV Total energy + Delta-G solvation = -3188.802076 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 272.102 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -50.01731 -41.33228 -40.06575 -36.32818 -34.75006 -33.88068 -32.51116 -32.06553 -28.77264 -28.11708 -27.04920 -24.94831 -23.48751 -22.43502 -22.02811 -19.38296 -18.87008 -18.23173 -17.26366 -17.07571 -16.59492 -16.12898 -16.05579 -15.53505 -15.25408 -14.82674 -14.60152 -14.46168 -14.30475 -13.68279 -13.40730 -13.36680 -13.18579 -13.05106 -12.92871 -12.81291 -12.67088 -12.46095 -12.17590 -11.64778 -11.35297 -10.89709 -10.74984 -10.20019 -9.81648 -9.67292 -9.19020 -8.76737 -6.47324 -0.25946 -0.01131 0.90330 1.09603 1.40319 1.51793 1.56623 2.14010 2.51367 2.59995 2.82740 3.36626 3.63122 3.78665 3.91020 4.01085 4.14151 4.40135 4.53099 4.58780 4.74669 4.81554 4.91157 4.97594 4.98197 5.02998 5.09608 5.13793 5.24193 5.41216 5.51046 5.61694 5.68740 5.82465 5.96809 5.98668 6.42770 6.63480 6.67783 6.71564 7.62135 8.11833 Molecular weight = 272.10amu Principal moments of inertia in cm(-1) A = 0.028845 B = 0.004794 C = 0.004171 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 970.474939 B = 5838.974542 C = 6711.116094 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.091 4.091 2 C -0.142 4.142 3 C 0.136 3.864 4 N -0.545 5.545 5 C 0.285 3.715 6 F -0.122 7.122 7 C -0.206 4.206 8 C 0.059 3.941 9 C -0.026 4.026 10 C -0.125 4.125 11 C -0.165 4.165 12 C 0.048 3.952 13 C -0.443 4.443 14 H 0.101 0.899 15 C 0.033 3.967 16 N -0.806 5.806 17 Si 0.989 3.011 18 H -0.259 1.259 19 H -0.270 1.270 20 H -0.252 1.252 21 C -0.008 4.008 22 C -0.066 4.066 23 N -0.429 5.429 24 H 0.066 0.934 25 H 0.078 0.922 26 H 0.080 0.920 27 H 0.200 0.800 28 H 0.149 0.851 29 H 0.119 0.881 30 H 0.118 0.882 31 H 0.296 0.704 32 H 0.064 0.936 33 H 0.066 0.934 34 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.118 4.409 1.641 5.160 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.145 4.145 3 C -0.020 4.020 4 N -0.260 5.260 5 C 0.133 3.867 6 F -0.101 7.101 7 C -0.228 4.228 8 C 0.050 3.950 9 C -0.159 4.159 10 C -0.145 4.145 11 C -0.189 4.189 12 C 0.043 3.957 13 C -0.471 4.471 14 H 0.119 0.881 15 C -0.186 4.186 16 N -0.429 5.429 17 Si 0.808 3.192 18 H -0.183 1.183 19 H -0.194 1.194 20 H -0.176 1.176 21 C -0.155 4.155 22 C -0.123 4.123 23 N -0.138 5.138 24 H 0.085 0.915 25 H 0.097 0.903 26 H 0.098 0.902 27 H 0.217 0.783 28 H 0.167 0.833 29 H 0.137 0.863 30 H 0.136 0.864 31 H 0.107 0.893 32 H 0.083 0.917 33 H 0.085 0.915 34 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -1.843 5.860 1.548 6.335 hybrid contribution 0.738 -2.529 -0.198 2.642 sum -1.105 3.331 1.350 3.760 Atomic orbital electron populations 1.20812 0.88008 1.03007 1.02960 1.21335 0.99562 0.92155 1.01449 1.22798 0.86713 0.98731 0.93737 1.66933 1.10420 1.30552 1.18100 1.17920 0.78322 0.90071 1.00401 1.91560 1.27771 1.97042 1.93726 1.21809 0.94956 0.97851 1.08188 1.18812 0.91331 0.92600 0.92208 1.18845 0.89978 0.90814 1.16255 1.21503 0.99782 0.93207 1.00030 1.21388 0.94802 0.97050 1.05679 1.18847 0.92827 0.94425 0.89627 1.20080 1.05800 0.94032 1.27208 0.88114 1.26998 0.94317 1.05294 0.91974 1.69786 1.20497 1.34612 1.18044 0.85074 0.78818 0.74817 0.80448 1.18316 1.19410 1.17566 1.21692 0.97080 0.87663 1.09079 1.20279 0.88415 1.02129 1.01506 1.67066 1.07357 1.29790 1.09593 0.91497 0.90277 0.90170 0.78331 0.83319 0.86338 0.86445 0.89301 0.91739 0.91496 0.91331 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -2.70 8.68 71.24 0.62 -2.08 16 2 C -0.14 -4.70 5.93 -19.51 -0.12 -4.81 16 3 C 0.14 3.95 10.82 84.60 0.92 4.86 16 4 N -0.54 -18.31 10.36 -197.21 -2.04 -20.35 16 5 C 0.28 9.93 8.40 84.66 0.71 10.64 16 6 F -0.12 -4.09 17.29 44.97 0.78 -3.31 16 7 C -0.21 -7.33 9.45 22.68 0.21 -7.12 16 8 C 0.06 2.25 5.90 -19.85 -0.12 2.13 16 9 C -0.03 -1.16 6.69 41.96 0.28 -0.88 16 10 C -0.12 -5.61 9.39 22.29 0.21 -5.40 16 11 C -0.16 -8.04 8.72 22.65 0.20 -7.84 16 12 C 0.05 2.33 5.58 -21.17 -0.12 2.21 16 13 C -0.44 -20.45 8.13 23.41 0.19 -20.26 16 14 H 0.10 4.28 6.89 -2.91 -0.02 4.26 16 15 C 0.03 1.42 5.25 85.30 0.45 1.87 16 16 N -0.81 -37.45 10.83 21.85 0.24 -37.22 16 17 Si 0.99 32.80 29.58 68.60 2.03 34.83 16 18 H -0.26 -8.29 7.11 99.48 0.71 -7.58 16 19 H -0.27 -8.72 7.11 99.48 0.71 -8.01 16 20 H -0.25 -8.13 7.11 99.48 0.71 -7.42 16 21 C -0.01 -0.37 6.86 43.32 0.30 -0.08 16 22 C -0.07 -2.38 9.58 71.24 0.68 -1.69 16 23 N -0.43 -18.79 6.27 -170.95 -1.07 -19.86 16 24 H 0.07 2.01 8.14 -2.39 -0.02 1.99 16 25 H 0.08 1.76 8.05 -2.39 -0.02 1.75 16 26 H 0.08 2.84 5.73 -2.39 -0.01 2.82 16 27 H 0.20 4.03 8.06 -2.91 -0.02 4.01 16 28 H 0.15 4.94 6.34 -2.91 -0.02 4.92 16 29 H 0.12 4.73 6.29 -2.91 -0.02 4.71 16 30 H 0.12 5.90 6.22 -2.91 -0.02 5.88 16 31 H 0.30 12.37 8.29 -92.71 -0.77 11.60 16 32 H 0.06 2.12 8.14 -2.39 -0.02 2.10 16 33 H 0.07 2.17 8.14 -2.39 -0.02 2.15 16 34 H 0.07 2.43 6.78 -2.38 -0.02 2.42 16 Total: -1.00 -54.26 292.10 5.49 -48.77 By element: Atomic # 1 Polarization: 24.45 SS G_CDS: 1.15 Total: 25.60 kcal Atomic # 6 Polarization: -32.87 SS G_CDS: 4.41 Total: -28.46 kcal Atomic # 7 Polarization: -74.55 SS G_CDS: -2.88 Total: -77.43 kcal Atomic # 9 Polarization: -4.09 SS G_CDS: 0.78 Total: -3.31 kcal Atomic # 14 Polarization: 32.80 SS G_CDS: 2.03 Total: 34.83 kcal Total: -54.26 5.49 -48.77 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001243783952.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.269 kcal (2) G-P(sol) polarization free energy of solvation -54.258 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.988 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.488 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -48.770 kcal (6) G-S(sol) free energy of system = (1) + (5) -1.500 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds