Wall clock time and date at job start Mon Mar 30 2020 01:00:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.37818 * 120.06550 * 2 1 4 4 C 1.38685 * 120.12574 * 179.97438 * 3 2 1 5 5 F 1.35096 * 119.87019 * 179.97438 * 4 3 2 6 6 C 1.38676 * 120.25666 * 0.25226 * 4 3 2 7 7 C 1.37825 * 120.12783 * 359.48932 * 6 4 3 8 8 C 1.50699 * 120.06772 * 180.27496 * 7 6 4 9 9 C 1.39746 * 119.86898 * 0.51020 * 7 6 4 10 10 C 1.47731 * 120.12621 * 179.76559 * 9 7 6 11 11 N 1.32887 * 120.24815 * 111.90271 * 10 9 7 12 12 C 1.32001 * 120.07437 * 180.02562 * 11 10 9 13 13 C 1.39203 * 120.59283 * 359.97438 * 12 11 10 14 14 N 1.31601 * 120.51274 * 359.97438 * 13 12 11 15 15 C 1.33981 * 119.89850 * 359.75218 * 14 13 12 16 16 C 1.40769 * 120.28886 * 180.27617 * 15 14 13 17 17 H 1.07997 * 120.00316 * 187.72691 * 16 15 14 18 18 C 1.40162 * 119.99945 * 7.73075 * 16 15 14 19 19 N 1.30688 * 120.00265 * 0.02562 * 18 16 15 20 20 Si 1.86804 * 120.00142 * 179.97438 * 18 16 15 21 21 H 1.48507 * 109.46791 * 89.99839 * 20 18 16 22 22 H 1.48496 * 109.47409 * 210.00153 * 20 18 16 23 23 H 1.48503 * 109.47172 * 330.00669 * 20 18 16 24 24 H 1.09008 * 109.46768 * 95.40639 * 1 2 3 25 25 H 1.08999 * 109.47535 * 215.40777 * 1 2 3 26 26 H 1.08993 * 109.46992 * 335.41432 * 1 2 3 27 27 H 1.07994 * 119.94140 * 359.97438 * 3 2 1 28 28 H 1.07998 * 119.93887 * 179.74434 * 6 4 3 29 29 H 1.08993 * 109.47830 * 264.95097 * 8 7 6 30 30 H 1.09005 * 109.47203 * 24.95591 * 8 7 6 31 31 H 1.09007 * 109.47266 * 144.95123 * 8 7 6 32 32 H 1.08005 * 119.70412 * 179.97438 * 12 11 10 33 33 H 1.07998 * 119.74578 * 180.02562 * 13 12 11 34 34 H 0.96994 * 120.00429 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1975 1.1928 0.0000 4 6 3.5843 1.1942 0.0005 5 9 4.2559 2.3664 0.0000 6 6 4.2843 -0.0029 -0.0042 7 6 3.6045 -1.2018 0.0012 8 6 4.3666 -2.5019 0.0023 9 6 2.2071 -1.2095 0.0006 10 6 1.4727 -2.4913 0.0011 11 7 0.7679 -2.8586 1.0661 12 6 0.1134 -4.0049 1.0630 13 6 0.1520 -4.8398 -0.0502 14 7 0.8418 -4.4985 -1.1177 15 6 1.5092 -3.3370 -1.1385 16 6 2.2449 -2.9611 -2.2782 17 1 2.8805 -2.0885 -2.2472 18 6 2.1525 -3.7193 -3.4534 19 7 1.3830 -4.7749 -3.4913 20 14 3.1282 -3.2201 -4.9662 21 1 4.4573 -3.8822 -4.9386 22 1 2.3937 -3.6350 -6.1882 23 1 3.3097 -1.7462 -4.9741 24 1 -0.3633 -0.0968 -1.0232 25 1 -0.3634 -0.8376 0.5954 26 1 -0.3633 0.9344 0.4275 27 1 1.6576 2.1281 -0.0004 28 1 5.3643 0.0042 -0.0079 29 1 4.4692 -2.8639 -1.0207 30 1 5.3556 -2.3430 0.4323 31 1 3.8264 -3.2393 0.5961 32 1 -0.4572 -4.2978 1.9320 33 1 -0.3890 -5.7744 -0.0381 34 1 1.3193 -5.2998 -4.3044 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001243906016.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:00:56 Heat of formation + Delta-G solvation = 6.742821 kcal Electronic energy + Delta-G solvation = -20624.490006 eV Core-core repulsion = 17436.045369 eV Total energy + Delta-G solvation = -3188.444637 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 272.102 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -48.46793 -39.59657 -38.10489 -34.25267 -33.10280 -32.55265 -31.40627 -29.29595 -27.05469 -26.44378 -25.85818 -23.03691 -22.03196 -20.48585 -20.39361 -17.74152 -16.43791 -16.34555 -15.99187 -15.92479 -15.17920 -14.96771 -14.30734 -13.60168 -13.47097 -13.13515 -12.91773 -12.68004 -12.64420 -12.55004 -12.48879 -11.91011 -11.57175 -11.43797 -11.20901 -11.00366 -10.78428 -10.71288 -10.52471 -10.33889 -9.91129 -9.62266 -9.17979 -8.22096 -8.18038 -7.70932 -7.39247 -6.64683 -4.81062 1.63271 1.76124 2.40407 2.85105 2.95354 2.98977 3.09942 3.74664 4.07650 4.51991 4.68836 5.18086 5.24341 5.31307 5.55676 5.57516 5.86450 5.91111 5.98029 6.02495 6.12093 6.18472 6.23557 6.32040 6.35574 6.51156 6.55714 6.63820 6.73922 6.80969 6.85506 7.00140 7.04563 7.25190 7.45486 7.58063 7.93775 8.27213 8.54369 9.12345 9.72107 9.97739 Molecular weight = 272.10amu Principal moments of inertia in cm(-1) A = 0.014713 B = 0.008717 C = 0.006495 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1902.594852 B = 3211.526254 C = 4309.835444 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.111 4.111 2 C -0.042 4.042 3 C -0.165 4.165 4 C 0.082 3.918 5 F -0.151 7.151 6 C -0.164 4.164 7 C -0.039 4.039 8 C -0.109 4.109 9 C 0.023 3.977 10 C -0.023 4.023 11 N -0.410 5.410 12 C -0.122 4.122 13 C 0.087 3.913 14 N -0.453 5.453 15 C 0.225 3.775 16 C -0.399 4.399 17 H 0.094 0.906 18 C 0.066 3.934 19 N -0.704 5.704 20 Si 0.905 3.095 21 H -0.264 1.264 22 H -0.273 1.273 23 H -0.256 1.256 24 H 0.068 0.932 25 H 0.081 0.919 26 H 0.057 0.943 27 H 0.126 0.874 28 H 0.127 0.873 29 H 0.087 0.913 30 H 0.054 0.946 31 H 0.066 0.934 32 H 0.127 0.873 33 H 0.129 0.871 34 H 0.279 0.721 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.241 4.751 1.761 5.540 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C -0.043 4.043 3 C -0.183 4.183 4 C 0.063 3.937 5 F -0.130 7.130 6 C -0.183 4.183 7 C -0.040 4.040 8 C -0.166 4.166 9 C 0.021 3.979 10 C -0.171 4.171 11 N -0.122 5.122 12 C -0.282 4.282 13 C -0.084 4.084 14 N -0.170 5.170 15 C 0.101 3.899 16 C -0.429 4.429 17 H 0.112 0.888 18 C -0.161 4.161 19 N -0.324 5.324 20 Si 0.728 3.272 21 H -0.189 1.189 22 H -0.198 1.198 23 H -0.180 1.180 24 H 0.086 0.914 25 H 0.100 0.900 26 H 0.076 0.924 27 H 0.144 0.856 28 H 0.145 0.855 29 H 0.105 0.895 30 H 0.073 0.927 31 H 0.085 0.915 32 H 0.145 0.855 33 H 0.147 0.853 34 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges 2.171 4.574 1.588 5.306 hybrid contribution 0.389 0.303 -0.673 0.834 sum 2.561 4.877 0.915 5.584 Atomic orbital electron populations 1.20768 0.90900 1.02546 1.02540 1.19801 0.96229 0.91225 0.97032 1.20746 0.91982 0.98675 1.06939 1.17640 0.90059 0.80744 1.05289 1.91425 1.80740 1.46423 1.94378 1.20758 0.99967 0.90730 1.06801 1.19821 0.92909 0.94592 0.96698 1.20812 0.97975 0.94008 1.03788 1.18133 0.91190 0.91278 0.97271 1.19904 1.06414 0.96594 0.94177 1.67731 1.03315 1.15012 1.26182 1.22539 1.09608 0.95628 1.00466 1.23520 0.95625 0.98459 0.90776 1.69551 1.08899 1.15613 1.22911 1.19185 0.91039 0.87845 0.91882 1.19695 1.20414 1.09109 0.93708 0.88807 1.26188 0.95057 0.94155 1.00731 1.70037 1.25032 1.09740 1.27560 0.86320 0.80231 0.80743 0.79878 1.18884 1.19761 1.18001 0.91371 0.90032 0.92420 0.85585 0.85456 0.89500 0.92663 0.91458 0.85507 0.85336 0.90934 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.97 9.53 36.01 0.34 -1.62 16 2 C -0.04 -0.81 5.91 -104.21 -0.62 -1.42 16 3 C -0.16 -2.84 9.64 -39.57 -0.38 -3.23 16 4 C 0.08 1.42 7.31 -39.25 -0.29 1.14 16 5 F -0.15 -2.51 17.26 2.25 0.04 -2.47 16 6 C -0.16 -2.84 9.64 -39.57 -0.38 -3.22 16 7 C -0.04 -0.75 4.89 -104.21 -0.51 -1.26 16 8 C -0.11 -1.99 8.69 36.01 0.31 -1.67 16 9 C 0.02 0.49 4.60 -104.89 -0.48 0.00 16 10 C -0.02 -0.54 4.04 -82.11 -0.33 -0.87 16 11 N -0.41 -9.51 9.25 -8.98 -0.08 -9.59 16 12 C -0.12 -2.65 11.22 -17.12 -0.19 -2.84 16 13 C 0.09 1.96 11.22 -17.29 -0.19 1.77 16 14 N -0.45 -11.62 8.08 -10.72 -0.09 -11.71 16 15 C 0.23 5.66 6.18 -84.55 -0.52 5.14 16 16 C -0.40 -9.70 7.24 -37.90 -0.27 -9.98 16 17 H 0.09 2.20 5.63 -52.49 -0.30 1.90 16 18 C 0.07 1.55 5.50 -17.32 -0.10 1.46 16 19 N -0.70 -17.26 11.52 55.56 0.64 -16.63 16 20 Si 0.91 17.36 29.56 -169.99 -5.03 12.33 16 21 H -0.26 -4.96 7.11 56.52 0.40 -4.56 16 22 H -0.27 -5.13 7.11 56.52 0.40 -4.73 16 23 H -0.26 -4.92 7.11 56.52 0.40 -4.52 16 24 H 0.07 1.21 8.14 -51.92 -0.42 0.78 16 25 H 0.08 1.60 6.39 -51.93 -0.33 1.27 16 26 H 0.06 0.84 8.05 -51.93 -0.42 0.42 16 27 H 0.13 1.85 8.06 -52.49 -0.42 1.43 16 28 H 0.13 1.88 8.06 -52.49 -0.42 1.46 16 29 H 0.09 1.64 6.66 -51.93 -0.35 1.29 16 30 H 0.05 0.82 8.05 -51.93 -0.42 0.41 16 31 H 0.07 1.35 7.29 -51.93 -0.38 0.97 16 32 H 0.13 2.38 8.06 -52.48 -0.42 1.95 16 33 H 0.13 2.49 8.06 -52.49 -0.42 2.07 16 34 H 0.28 6.19 8.29 -40.82 -0.34 5.85 16 LS Contribution 293.33 15.07 4.42 4.42 Total: -1.00 -27.11 293.33 -7.14 -34.25 By element: Atomic # 1 Polarization: 9.43 SS G_CDS: -3.44 Total: 6.00 kcal Atomic # 6 Polarization: -13.00 SS G_CDS: -3.61 Total: -16.61 kcal Atomic # 7 Polarization: -38.39 SS G_CDS: 0.47 Total: -37.92 kcal Atomic # 9 Polarization: -2.51 SS G_CDS: 0.04 Total: -2.47 kcal Atomic # 14 Polarization: 17.36 SS G_CDS: -5.03 Total: 12.33 kcal Total LS contribution 4.42 Total: 4.42 kcal Total: -27.11 -7.14 -34.25 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001243906016.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.995 kcal (2) G-P(sol) polarization free energy of solvation -27.109 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 13.886 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.143 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.253 kcal (6) G-S(sol) free energy of system = (1) + (5) 6.743 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds