Wall clock time and date at job start Mon Mar 30 2020 01:00:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.37818 * 120.06550 * 2 1 4 4 C 1.38685 * 120.12574 * 179.97438 * 3 2 1 5 5 F 1.35096 * 119.87019 * 179.97438 * 4 3 2 6 6 C 1.38676 * 120.25666 * 0.25226 * 4 3 2 7 7 C 1.37825 * 120.12783 * 359.48932 * 6 4 3 8 8 C 1.50699 * 120.06772 * 180.27496 * 7 6 4 9 9 C 1.39746 * 119.86898 * 0.51020 * 7 6 4 10 10 C 1.47731 * 120.12621 * 179.76559 * 9 7 6 11 11 N 1.32887 * 120.24815 * 111.90271 * 10 9 7 12 12 C 1.32001 * 120.07437 * 180.02562 * 11 10 9 13 13 C 1.39203 * 120.59283 * 359.97438 * 12 11 10 14 14 N 1.31601 * 120.51274 * 359.97438 * 13 12 11 15 15 C 1.33981 * 119.89850 * 359.75218 * 14 13 12 16 16 C 1.40769 * 120.28886 * 180.27617 * 15 14 13 17 17 H 1.07997 * 120.00316 * 187.72691 * 16 15 14 18 18 C 1.40162 * 119.99945 * 7.73075 * 16 15 14 19 19 N 1.30688 * 120.00265 * 0.02562 * 18 16 15 20 20 Si 1.86804 * 120.00142 * 179.97438 * 18 16 15 21 21 H 1.48507 * 109.46791 * 89.99839 * 20 18 16 22 22 H 1.48496 * 109.47409 * 210.00153 * 20 18 16 23 23 H 1.48503 * 109.47172 * 330.00669 * 20 18 16 24 24 H 1.09008 * 109.46768 * 95.40639 * 1 2 3 25 25 H 1.08999 * 109.47535 * 215.40777 * 1 2 3 26 26 H 1.08993 * 109.46992 * 335.41432 * 1 2 3 27 27 H 1.07994 * 119.94140 * 359.97438 * 3 2 1 28 28 H 1.07998 * 119.93887 * 179.74434 * 6 4 3 29 29 H 1.08993 * 109.47830 * 264.95097 * 8 7 6 30 30 H 1.09005 * 109.47203 * 24.95591 * 8 7 6 31 31 H 1.09007 * 109.47266 * 144.95123 * 8 7 6 32 32 H 1.08005 * 119.70412 * 179.97438 * 12 11 10 33 33 H 1.07998 * 119.74578 * 180.02562 * 13 12 11 34 34 H 0.96994 * 120.00429 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1975 1.1928 0.0000 4 6 3.5843 1.1942 0.0005 5 9 4.2559 2.3664 0.0000 6 6 4.2843 -0.0029 -0.0042 7 6 3.6045 -1.2018 0.0012 8 6 4.3666 -2.5019 0.0023 9 6 2.2071 -1.2095 0.0006 10 6 1.4727 -2.4913 0.0011 11 7 0.7679 -2.8586 1.0661 12 6 0.1134 -4.0049 1.0630 13 6 0.1520 -4.8398 -0.0502 14 7 0.8418 -4.4985 -1.1177 15 6 1.5092 -3.3370 -1.1385 16 6 2.2449 -2.9611 -2.2782 17 1 2.8805 -2.0885 -2.2472 18 6 2.1525 -3.7193 -3.4534 19 7 1.3830 -4.7749 -3.4913 20 14 3.1282 -3.2201 -4.9662 21 1 4.4573 -3.8822 -4.9386 22 1 2.3937 -3.6350 -6.1882 23 1 3.3097 -1.7462 -4.9741 24 1 -0.3633 -0.0968 -1.0232 25 1 -0.3634 -0.8376 0.5954 26 1 -0.3633 0.9344 0.4275 27 1 1.6576 2.1281 -0.0004 28 1 5.3643 0.0042 -0.0079 29 1 4.4692 -2.8639 -1.0207 30 1 5.3556 -2.3430 0.4323 31 1 3.8264 -3.2393 0.5961 32 1 -0.4572 -4.2978 1.9320 33 1 -0.3890 -5.7744 -0.0381 34 1 1.3193 -5.2998 -4.3044 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001243906016.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:00:56 Heat of formation + Delta-G solvation = -6.969547 kcal Electronic energy + Delta-G solvation = -20625.084619 eV Core-core repulsion = 17436.045369 eV Total energy + Delta-G solvation = -3189.039250 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 272.102 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -49.80666 -41.23544 -39.66968 -35.99901 -34.54297 -34.23497 -33.08005 -30.89023 -28.64283 -27.86273 -27.52728 -24.67952 -23.79951 -22.01473 -21.81092 -19.52957 -18.00017 -17.81406 -17.50996 -17.44070 -16.74407 -16.50252 -15.93062 -15.12753 -15.01816 -14.60712 -14.44671 -14.21712 -14.15594 -14.02573 -13.94311 -13.41625 -13.23940 -12.99805 -12.61703 -12.56963 -12.31953 -12.19572 -11.98247 -11.91925 -11.62211 -11.43044 -10.95057 -9.83186 -9.61702 -9.43201 -9.04482 -8.38811 -6.61892 0.15452 0.35325 0.68146 1.13337 1.38494 1.49312 1.53242 2.15841 2.62232 2.77666 3.30069 3.72072 3.74425 3.87978 3.89415 4.20233 4.21244 4.43938 4.49351 4.62657 4.65453 4.65751 4.75554 4.83358 4.86675 4.88060 5.08741 5.13778 5.16709 5.20735 5.30773 5.38880 5.52785 5.78718 5.83224 6.05301 6.14295 6.50525 6.75320 7.35330 7.93783 8.27520 Molecular weight = 272.10amu Principal moments of inertia in cm(-1) A = 0.014713 B = 0.008717 C = 0.006495 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1902.594852 B = 3211.526254 C = 4309.835444 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.106 4.106 2 C -0.055 4.055 3 C -0.158 4.158 4 C 0.084 3.916 5 F -0.143 7.143 6 C -0.158 4.158 7 C -0.051 4.051 8 C -0.101 4.101 9 C -0.010 4.010 10 C -0.018 4.018 11 N -0.426 5.426 12 C -0.122 4.122 13 C 0.073 3.927 14 N -0.489 5.489 15 C 0.200 3.800 16 C -0.417 4.417 17 H 0.096 0.904 18 C 0.027 3.973 19 N -0.741 5.741 20 Si 0.974 3.026 21 H -0.256 1.256 22 H -0.266 1.266 23 H -0.255 1.255 24 H 0.061 0.939 25 H 0.057 0.943 26 H 0.090 0.910 27 H 0.155 0.845 28 H 0.156 0.844 29 H 0.075 0.925 30 H 0.088 0.912 31 H 0.038 0.962 32 H 0.158 0.842 33 H 0.155 0.845 34 H 0.286 0.714 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.252 6.420 1.631 7.380 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C -0.056 4.056 3 C -0.177 4.177 4 C 0.065 3.935 5 F -0.122 7.122 6 C -0.176 4.176 7 C -0.052 4.052 8 C -0.158 4.158 9 C -0.012 4.012 10 C -0.166 4.166 11 N -0.139 5.139 12 C -0.283 4.283 13 C -0.096 4.096 14 N -0.206 5.206 15 C 0.075 3.925 16 C -0.448 4.448 17 H 0.114 0.886 18 C -0.197 4.197 19 N -0.362 5.362 20 Si 0.794 3.206 21 H -0.180 1.180 22 H -0.191 1.191 23 H -0.179 1.179 24 H 0.080 0.920 25 H 0.076 0.924 26 H 0.109 0.891 27 H 0.173 0.827 28 H 0.174 0.826 29 H 0.094 0.906 30 H 0.107 0.893 31 H 0.057 0.943 32 H 0.175 0.825 33 H 0.173 0.827 34 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges 3.170 6.237 1.487 7.153 hybrid contribution 0.046 -0.175 -0.510 0.541 sum 3.216 6.062 0.977 6.932 Atomic orbital electron populations 1.20726 0.90314 1.03284 1.01930 1.19980 0.96905 0.91337 0.97427 1.20982 0.92196 0.99013 1.05472 1.17718 0.90229 0.81003 1.04535 1.91450 1.80568 1.45929 1.94228 1.20987 1.01386 0.89866 1.05409 1.19939 0.92417 0.95653 0.97193 1.20720 0.99231 0.93001 1.02804 1.18314 0.92206 0.91026 0.99626 1.20177 1.05780 0.97190 0.93456 1.67818 1.03989 1.15653 1.26395 1.23040 1.09017 0.95021 1.01178 1.23975 0.95499 0.99633 0.90476 1.69495 1.10168 1.16463 1.24478 1.19553 0.91632 0.88301 0.92981 1.19874 1.20971 1.09641 0.94293 0.88617 1.27007 0.95667 0.93791 1.03221 1.70111 1.26481 1.10899 1.28717 0.85301 0.78936 0.80229 0.76162 1.18033 1.19071 1.17886 0.92029 0.92392 0.89123 0.82723 0.82646 0.90600 0.89313 0.94297 0.82502 0.82741 0.90352 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -3.68 9.53 71.24 0.68 -3.00 16 2 C -0.06 -2.08 5.91 -19.60 -0.12 -2.19 16 3 C -0.16 -5.05 9.64 22.28 0.21 -4.83 16 4 C 0.08 2.69 7.31 22.48 0.16 2.85 16 5 F -0.14 -4.25 17.26 44.97 0.78 -3.48 16 6 C -0.16 -5.07 9.64 22.28 0.21 -4.86 16 7 C -0.05 -1.92 4.89 -19.60 -0.10 -2.01 16 8 C -0.10 -3.64 8.69 71.24 0.62 -3.03 16 9 C -0.01 -0.43 4.60 -20.04 -0.09 -0.52 16 10 C -0.02 -0.87 4.04 42.41 0.17 -0.70 16 11 N -0.43 -20.02 9.25 -182.31 -1.69 -21.70 16 12 C -0.12 -5.36 11.22 84.90 0.95 -4.40 16 13 C 0.07 3.37 11.22 84.96 0.95 4.32 16 14 N -0.49 -25.78 8.08 -187.84 -1.52 -27.30 16 15 C 0.20 10.36 6.18 40.35 0.25 10.61 16 16 C -0.42 -20.72 7.24 23.36 0.17 -20.55 16 17 H 0.10 4.55 5.63 -2.91 -0.02 4.54 16 18 C 0.03 1.29 5.50 85.33 0.47 1.76 16 19 N -0.74 -37.16 11.52 21.86 0.25 -36.91 16 20 Si 0.97 35.47 29.56 68.60 2.03 37.50 16 21 H -0.26 -8.91 7.11 99.48 0.71 -8.21 16 22 H -0.27 -9.31 7.11 99.48 0.71 -8.61 16 23 H -0.26 -9.14 7.11 99.48 0.71 -8.44 16 24 H 0.06 2.17 8.14 -2.38 -0.02 2.15 16 25 H 0.06 2.28 6.39 -2.39 -0.02 2.26 16 26 H 0.09 2.45 8.05 -2.39 -0.02 2.43 16 27 H 0.16 3.97 8.06 -2.91 -0.02 3.95 16 28 H 0.16 4.03 8.06 -2.91 -0.02 4.01 16 29 H 0.08 2.88 6.66 -2.39 -0.02 2.86 16 30 H 0.09 2.50 8.05 -2.38 -0.02 2.48 16 31 H 0.04 1.59 7.29 -2.38 -0.02 1.57 16 32 H 0.16 5.72 8.06 -2.91 -0.02 5.69 16 33 H 0.16 5.99 8.06 -2.91 -0.02 5.96 16 34 H 0.29 12.89 8.29 -92.71 -0.77 12.12 16 Total: -1.00 -59.20 293.33 5.54 -53.66 By element: Atomic # 1 Polarization: 23.65 SS G_CDS: 1.14 Total: 24.79 kcal Atomic # 6 Polarization: -31.10 SS G_CDS: 4.55 Total: -26.55 kcal Atomic # 7 Polarization: -82.96 SS G_CDS: -2.95 Total: -85.91 kcal Atomic # 9 Polarization: -4.25 SS G_CDS: 0.78 Total: -3.48 kcal Atomic # 14 Polarization: 35.47 SS G_CDS: 2.03 Total: 37.50 kcal Total: -59.20 5.54 -53.66 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001243906016.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.687 kcal (2) G-P(sol) polarization free energy of solvation -59.195 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.508 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.539 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -53.657 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.970 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds