Wall clock time and date at job start Mon Mar 30 2020 01:00:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 C 1.37937 * 120.05409 * 2 1 4 4 C 1.38577 * 120.10228 * 180.27245 * 3 2 1 5 5 F 1.35097 * 119.90139 * 179.72202 * 4 3 2 6 6 C 1.38590 * 120.20016 * 359.69931 * 4 3 2 7 7 C 1.37932 * 120.10233 * 359.97438 * 6 4 3 8 8 C 1.50695 * 120.05153 * 180.02562 * 7 6 4 9 9 C 1.39427 * 119.89801 * 0.02562 * 7 6 4 10 10 C 1.48262 * 120.10325 * 179.97438 * 9 7 6 11 11 C 1.40064 * 119.98867 * 126.19038 * 10 9 7 12 12 N 1.32164 * 120.28719 * 179.97438 * 11 10 9 13 13 C 1.31889 * 120.29220 * 0.02562 * 12 11 10 14 14 C 1.40812 * 119.97113 * 359.97438 * 13 12 11 15 15 C 1.41326 * 120.14907 * 180.02562 * 14 13 12 16 16 H 1.08001 * 119.99355 * 353.83570 * 15 14 13 17 17 C 1.40045 * 120.00142 * 173.55574 * 15 14 13 18 18 N 1.30729 * 119.99842 * 353.51263 * 17 15 14 19 19 Si 1.86797 * 120.00081 * 173.51134 * 17 15 14 20 20 H 1.48499 * 109.47196 * 89.99825 * 19 17 15 21 21 H 1.48500 * 109.47394 * 210.00212 * 19 17 15 22 22 H 1.48502 * 109.46684 * 329.99922 * 19 17 15 23 23 N 1.32539 * 119.98356 * 306.45010 * 10 9 7 24 24 H 1.09003 * 109.47201 * 267.59343 * 1 2 3 25 25 H 1.09004 * 109.46538 * 27.59088 * 1 2 3 26 26 H 1.08997 * 109.47276 * 147.58858 * 1 2 3 27 27 H 1.08004 * 119.94477 * 0.02562 * 3 2 1 28 28 H 1.08002 * 119.94412 * 180.02562 * 6 4 3 29 29 H 1.08995 * 109.47366 * 266.25563 * 8 7 6 30 30 H 1.08999 * 109.47125 * 26.26131 * 8 7 6 31 31 H 1.09004 * 109.46989 * 146.25157 * 8 7 6 32 32 H 1.07991 * 119.85300 * 0.02562 * 11 10 9 33 33 H 1.07998 * 120.01594 * 180.02562 * 13 12 11 34 34 H 0.97001 * 119.99847 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1978 1.1939 0.0000 4 6 3.5836 1.1951 -0.0057 5 9 4.2561 2.3668 -0.0114 6 6 4.2818 -0.0021 -0.0051 7 6 3.5995 -1.2008 0.0016 8 6 4.3598 -2.5019 0.0028 9 6 2.2052 -1.2069 0.0074 10 6 1.4672 -2.4927 0.0141 11 6 0.5015 -2.7405 0.9979 12 7 -0.1603 -3.8845 1.0091 13 6 0.0833 -4.8030 0.0945 14 6 1.0517 -4.5660 -0.8999 15 6 1.3153 -5.5474 -1.8822 16 1 0.8477 -6.5185 -1.8143 17 6 2.1783 -5.2585 -2.9467 18 7 2.6398 -4.0455 -3.1033 19 14 2.6698 -6.6066 -4.1427 20 1 1.6998 -6.6493 -5.2663 21 1 4.0287 -6.3272 -4.6723 22 1 2.6717 -7.9149 -3.4403 23 7 1.7252 -3.4094 -0.9078 24 1 -0.3634 -0.0432 1.0268 25 1 -0.3632 0.9109 -0.4760 26 1 -0.3633 -0.8675 -0.5508 27 1 1.6578 2.1292 0.0004 28 1 5.3618 0.0036 -0.0092 29 1 4.4809 -2.8529 -1.0219 30 1 5.3406 -2.3492 0.4530 31 1 3.8076 -3.2448 0.5785 32 1 0.2962 -1.9932 1.7499 33 1 -0.4604 -5.7360 0.1076 34 1 3.2373 -3.8454 -3.8408 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001243915599.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:00:58 Heat of formation + Delta-G solvation = 4.622685 kcal Electronic energy + Delta-G solvation = -20321.483931 eV Core-core repulsion = 17132.947358 eV Total energy + Delta-G solvation = -3188.536573 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 272.102 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -48.61417 -39.66221 -38.25164 -34.16405 -33.30218 -32.69288 -31.30436 -29.38856 -27.03251 -26.65461 -25.87481 -23.09210 -22.08692 -20.55148 -20.52028 -17.71678 -16.56630 -16.38840 -16.06712 -15.36448 -15.27598 -15.18382 -14.89236 -13.64835 -13.57036 -13.20246 -13.04920 -12.76960 -12.66208 -12.61322 -12.30714 -11.73610 -11.63393 -11.41954 -11.27934 -11.24122 -10.93786 -10.76680 -10.64617 -10.36586 -9.90411 -9.61426 -9.19603 -8.35883 -8.33064 -7.66403 -7.43418 -6.63530 -4.76404 1.38240 1.60361 2.43971 2.86591 2.97845 3.00335 3.11089 3.77824 3.93734 4.53174 4.53931 5.02326 5.10143 5.14249 5.40979 5.56046 5.71786 5.83022 5.87566 5.94380 5.98252 6.11489 6.19143 6.27074 6.32804 6.39128 6.48171 6.51264 6.68815 6.81172 6.86802 6.91711 7.02021 7.13729 7.29678 7.55451 7.94592 8.31336 8.55833 9.14136 9.70490 10.03531 Molecular weight = 272.10amu Principal moments of inertia in cm(-1) A = 0.019397 B = 0.006445 C = 0.005350 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1443.142275 B = 4343.481007 C = 5232.224859 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.111 4.111 2 C -0.039 4.039 3 C -0.167 4.167 4 C 0.093 3.907 5 F -0.148 7.148 6 C -0.168 4.168 7 C -0.017 4.017 8 C -0.102 4.102 9 C -0.020 4.020 10 C 0.141 3.859 11 C -0.103 4.103 12 N -0.429 5.429 13 C -0.064 4.064 14 C 0.207 3.793 15 C -0.412 4.412 16 H 0.091 0.909 17 C 0.069 3.931 18 N -0.708 5.708 19 Si 0.910 3.090 20 H -0.268 1.268 21 H -0.274 1.274 22 H -0.259 1.259 23 N -0.435 5.435 24 H 0.074 0.926 25 H 0.061 0.939 26 H 0.074 0.926 27 H 0.130 0.870 28 H 0.130 0.870 29 H 0.090 0.910 30 H 0.051 0.949 31 H 0.067 0.933 32 H 0.126 0.874 33 H 0.133 0.867 34 H 0.278 0.722 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.318 5.510 1.834 6.253 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C -0.040 4.040 3 C -0.186 4.186 4 C 0.074 3.926 5 F -0.127 7.127 6 C -0.187 4.187 7 C -0.018 4.018 8 C -0.159 4.159 9 C -0.022 4.022 10 C -0.007 4.007 11 C -0.262 4.262 12 N -0.140 5.140 13 C -0.234 4.234 14 C 0.081 3.919 15 C -0.444 4.444 16 H 0.109 0.891 17 C -0.158 4.158 18 N -0.329 5.329 19 Si 0.733 3.267 20 H -0.193 1.193 21 H -0.199 1.199 22 H -0.183 1.183 23 N -0.153 5.153 24 H 0.093 0.907 25 H 0.080 0.920 26 H 0.093 0.907 27 H 0.148 0.852 28 H 0.148 0.852 29 H 0.109 0.891 30 H 0.070 0.930 31 H 0.086 0.914 32 H 0.144 0.856 33 H 0.151 0.849 34 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges 2.481 5.671 1.684 6.415 hybrid contribution 0.392 -0.248 -0.640 0.791 sum 2.873 5.423 1.043 6.225 Atomic orbital electron populations 1.20838 0.90489 1.02780 1.02626 1.19697 0.96290 0.91083 0.96977 1.20736 0.91992 0.98688 1.07187 1.17642 0.90086 0.80827 1.04027 1.91443 1.80670 1.46361 1.94211 1.20830 1.00221 0.90700 1.06910 1.19782 0.92718 0.94835 0.94450 1.20719 0.97551 0.93516 1.04099 1.18477 0.91972 0.91588 1.00163 1.20454 0.93844 0.93221 0.93211 1.22483 1.02912 0.97451 1.03360 1.67675 1.22578 1.01008 1.22726 1.23200 1.03251 0.99519 0.97448 1.19368 0.89261 0.90876 0.92381 1.19619 1.21703 0.98908 1.04129 0.89119 1.26097 0.95044 0.96244 0.98403 1.70027 1.19405 1.19165 1.24263 0.86275 0.78660 0.81525 0.80217 1.19262 1.19919 1.18282 1.69660 1.24736 1.00647 1.20214 0.90746 0.91983 0.90680 0.85222 0.85246 0.89128 0.93016 0.91405 0.85649 0.84942 0.91059 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.74 8.53 36.01 0.31 -1.43 16 2 C -0.04 -0.69 5.88 -104.29 -0.61 -1.30 16 3 C -0.17 -2.64 9.66 -39.57 -0.38 -3.02 16 4 C 0.09 1.52 7.30 -39.33 -0.29 1.23 16 5 F -0.15 -2.31 17.26 2.25 0.04 -2.28 16 6 C -0.17 -2.78 9.65 -39.56 -0.38 -3.16 16 7 C -0.02 -0.32 5.90 -104.29 -0.62 -0.93 16 8 C -0.10 -1.89 8.92 36.00 0.32 -1.57 16 9 C -0.02 -0.41 5.58 -104.89 -0.58 -0.99 16 10 C 0.14 3.22 4.36 -82.76 -0.36 2.86 16 11 C -0.10 -2.31 9.32 -16.72 -0.16 -2.47 16 12 N -0.43 -10.19 10.47 -12.05 -0.13 -10.31 16 13 C -0.06 -1.55 10.97 -16.55 -0.18 -1.73 16 14 C 0.21 5.28 6.52 -84.84 -0.55 4.73 16 15 C -0.41 -10.07 9.15 -37.73 -0.35 -10.42 16 16 H 0.09 2.05 7.86 -52.49 -0.41 1.64 16 17 C 0.07 1.61 5.48 -17.34 -0.09 1.51 16 18 N -0.71 -17.24 11.57 55.55 0.64 -16.60 16 19 Si 0.91 17.18 29.57 -169.99 -5.03 12.15 16 20 H -0.27 -5.03 7.11 56.52 0.40 -4.62 16 21 H -0.27 -5.12 7.11 56.52 0.40 -4.72 16 22 H -0.26 -4.83 7.11 56.52 0.40 -4.43 16 23 N -0.44 -10.96 6.96 -7.50 -0.05 -11.01 16 24 H 0.07 1.06 7.56 -51.93 -0.39 0.67 16 25 H 0.06 0.81 8.07 -51.93 -0.42 0.39 16 26 H 0.07 1.38 6.78 -51.93 -0.35 1.02 16 27 H 0.13 1.71 8.06 -52.48 -0.42 1.28 16 28 H 0.13 1.85 8.06 -52.49 -0.42 1.42 16 29 H 0.09 1.84 8.14 -51.93 -0.42 1.41 16 30 H 0.05 0.78 8.06 -51.93 -0.42 0.37 16 31 H 0.07 1.39 7.03 -51.93 -0.37 1.03 16 32 H 0.13 2.52 7.18 -52.49 -0.38 2.14 16 33 H 0.13 2.89 8.06 -52.49 -0.42 2.47 16 34 H 0.28 6.19 8.29 -40.82 -0.34 5.85 16 LS Contribution 297.53 15.07 4.48 4.48 Total: -1.00 -26.81 297.53 -7.53 -34.34 By element: Atomic # 1 Polarization: 9.48 SS G_CDS: -3.56 Total: 5.92 kcal Atomic # 6 Polarization: -12.77 SS G_CDS: -3.93 Total: -16.70 kcal Atomic # 7 Polarization: -38.39 SS G_CDS: 0.46 Total: -37.92 kcal Atomic # 9 Polarization: -2.31 SS G_CDS: 0.04 Total: -2.28 kcal Atomic # 14 Polarization: 17.18 SS G_CDS: -5.03 Total: 12.15 kcal Total LS contribution 4.48 Total: 4.48 kcal Total: -26.81 -7.53 -34.34 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001243915599.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.965 kcal (2) G-P(sol) polarization free energy of solvation -26.813 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 12.152 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.529 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.342 kcal (6) G-S(sol) free energy of system = (1) + (5) 4.623 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds