Wall clock time and date at job start Mon Mar 30 2020 01:00:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 C 1.37937 * 120.05409 * 2 1 4 4 C 1.38577 * 120.10228 * 180.27245 * 3 2 1 5 5 F 1.35097 * 119.90139 * 179.72202 * 4 3 2 6 6 C 1.38590 * 120.20016 * 359.69931 * 4 3 2 7 7 C 1.37932 * 120.10233 * 359.97438 * 6 4 3 8 8 C 1.50695 * 120.05153 * 180.02562 * 7 6 4 9 9 C 1.39427 * 119.89801 * 0.02562 * 7 6 4 10 10 C 1.48262 * 120.10325 * 179.97438 * 9 7 6 11 11 C 1.40064 * 119.98867 * 126.19038 * 10 9 7 12 12 N 1.32164 * 120.28719 * 179.97438 * 11 10 9 13 13 C 1.31889 * 120.29220 * 0.02562 * 12 11 10 14 14 C 1.40812 * 119.97113 * 359.97438 * 13 12 11 15 15 C 1.41326 * 120.14907 * 180.02562 * 14 13 12 16 16 H 1.08001 * 119.99355 * 353.83570 * 15 14 13 17 17 C 1.40045 * 120.00142 * 173.55574 * 15 14 13 18 18 N 1.30729 * 119.99842 * 353.51263 * 17 15 14 19 19 Si 1.86797 * 120.00081 * 173.51134 * 17 15 14 20 20 H 1.48499 * 109.47196 * 89.99825 * 19 17 15 21 21 H 1.48500 * 109.47394 * 210.00212 * 19 17 15 22 22 H 1.48502 * 109.46684 * 329.99922 * 19 17 15 23 23 N 1.32539 * 119.98356 * 306.45010 * 10 9 7 24 24 H 1.09003 * 109.47201 * 267.59343 * 1 2 3 25 25 H 1.09004 * 109.46538 * 27.59088 * 1 2 3 26 26 H 1.08997 * 109.47276 * 147.58858 * 1 2 3 27 27 H 1.08004 * 119.94477 * 0.02562 * 3 2 1 28 28 H 1.08002 * 119.94412 * 180.02562 * 6 4 3 29 29 H 1.08995 * 109.47366 * 266.25563 * 8 7 6 30 30 H 1.08999 * 109.47125 * 26.26131 * 8 7 6 31 31 H 1.09004 * 109.46989 * 146.25157 * 8 7 6 32 32 H 1.07991 * 119.85300 * 0.02562 * 11 10 9 33 33 H 1.07998 * 120.01594 * 180.02562 * 13 12 11 34 34 H 0.97001 * 119.99847 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1978 1.1939 0.0000 4 6 3.5836 1.1951 -0.0057 5 9 4.2561 2.3668 -0.0114 6 6 4.2818 -0.0021 -0.0051 7 6 3.5995 -1.2008 0.0016 8 6 4.3598 -2.5019 0.0028 9 6 2.2052 -1.2069 0.0074 10 6 1.4672 -2.4927 0.0141 11 6 0.5015 -2.7405 0.9979 12 7 -0.1603 -3.8845 1.0091 13 6 0.0833 -4.8030 0.0945 14 6 1.0517 -4.5660 -0.8999 15 6 1.3153 -5.5474 -1.8822 16 1 0.8477 -6.5185 -1.8143 17 6 2.1783 -5.2585 -2.9467 18 7 2.6398 -4.0455 -3.1033 19 14 2.6698 -6.6066 -4.1427 20 1 1.6998 -6.6493 -5.2663 21 1 4.0287 -6.3272 -4.6723 22 1 2.6717 -7.9149 -3.4403 23 7 1.7252 -3.4094 -0.9078 24 1 -0.3634 -0.0432 1.0268 25 1 -0.3632 0.9109 -0.4760 26 1 -0.3633 -0.8675 -0.5508 27 1 1.6578 2.1292 0.0004 28 1 5.3618 0.0036 -0.0092 29 1 4.4809 -2.8529 -1.0219 30 1 5.3406 -2.3492 0.4530 31 1 3.8076 -3.2448 0.5785 32 1 0.2962 -1.9932 1.7499 33 1 -0.4604 -5.7360 0.1076 34 1 3.2373 -3.8454 -3.8408 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001243915599.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:00:58 Heat of formation + Delta-G solvation = -8.789311 kcal Electronic energy + Delta-G solvation = -20322.065519 eV Core-core repulsion = 17132.947358 eV Total energy + Delta-G solvation = -3189.118161 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 272.102 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -49.87923 -41.27370 -39.81289 -35.94573 -34.69517 -34.33035 -33.00238 -30.98833 -28.54940 -28.04156 -27.56186 -24.73925 -23.85951 -22.04057 -21.89750 -19.49885 -18.01880 -17.80634 -17.53736 -17.06382 -16.88778 -16.59229 -16.50952 -15.15751 -15.08391 -14.56200 -14.50162 -14.29510 -14.08462 -14.00562 -13.72919 -13.38300 -13.30497 -13.00285 -12.83917 -12.66662 -12.42922 -12.22669 -11.99391 -11.95901 -11.65758 -11.45509 -10.94773 -9.97374 -9.67921 -9.40474 -9.10861 -8.40267 -6.62562 -0.06817 0.27129 0.72766 1.11928 1.41913 1.51739 1.56493 2.18959 2.53749 2.78332 3.21717 3.55711 3.69386 3.81510 3.83740 4.08737 4.13765 4.33488 4.49021 4.54153 4.59188 4.63565 4.75214 4.78369 4.80051 4.87193 5.04849 5.09056 5.16015 5.19262 5.22215 5.34392 5.43015 5.67108 5.77201 5.95505 6.12383 6.49704 6.72541 7.30660 7.88578 8.30244 Molecular weight = 272.10amu Principal moments of inertia in cm(-1) A = 0.019397 B = 0.006445 C = 0.005350 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1443.142275 B = 4343.481007 C = 5232.224859 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.106 4.106 2 C -0.043 4.043 3 C -0.157 4.157 4 C 0.098 3.902 5 F -0.140 7.140 6 C -0.163 4.163 7 C -0.032 4.032 8 C -0.090 4.090 9 C -0.054 4.054 10 C 0.142 3.858 11 C -0.107 4.107 12 N -0.437 5.437 13 C -0.087 4.087 14 C 0.179 3.821 15 C -0.437 4.437 16 H 0.100 0.900 17 C 0.029 3.971 18 N -0.740 5.740 19 Si 0.986 3.014 20 H -0.262 1.262 21 H -0.269 1.269 22 H -0.254 1.254 23 N -0.457 5.457 24 H 0.089 0.911 25 H 0.092 0.908 26 H 0.041 0.959 27 H 0.163 0.837 28 H 0.154 0.846 29 H 0.066 0.934 30 H 0.084 0.916 31 H 0.037 0.963 32 H 0.148 0.852 33 H 0.146 0.854 34 H 0.284 0.716 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.018 6.922 1.582 7.715 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C -0.044 4.044 3 C -0.175 4.175 4 C 0.079 3.921 5 F -0.119 7.119 6 C -0.182 4.182 7 C -0.033 4.033 8 C -0.147 4.147 9 C -0.056 4.056 10 C -0.007 4.007 11 C -0.266 4.266 12 N -0.149 5.149 13 C -0.255 4.255 14 C 0.053 3.947 15 C -0.468 4.468 16 H 0.118 0.882 17 C -0.195 4.195 18 N -0.361 5.361 19 Si 0.806 3.194 20 H -0.187 1.187 21 H -0.194 1.194 22 H -0.177 1.177 23 N -0.175 5.175 24 H 0.107 0.893 25 H 0.110 0.890 26 H 0.060 0.940 27 H 0.181 0.819 28 H 0.171 0.829 29 H 0.085 0.915 30 H 0.103 0.897 31 H 0.057 0.943 32 H 0.165 0.835 33 H 0.163 0.837 34 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges 3.166 7.078 1.445 7.888 hybrid contribution 0.189 -0.532 -0.504 0.756 sum 3.355 6.547 0.941 7.416 Atomic orbital electron populations 1.20827 0.89384 1.02707 1.03364 1.19888 0.97185 0.90744 0.96550 1.21013 0.91968 0.99205 1.05356 1.17714 0.90402 0.80900 1.03121 1.91470 1.80558 1.45834 1.94037 1.20997 1.01453 0.89935 1.05808 1.19835 0.92434 0.95577 0.95502 1.20556 0.98886 0.92962 1.02304 1.18605 0.92767 0.91275 1.02958 1.20888 0.93627 0.93861 0.92299 1.22860 1.02635 0.97433 1.03677 1.67679 1.22966 1.01492 1.22770 1.23376 1.03895 1.00386 0.97863 1.19794 0.89975 0.91652 0.93300 1.20004 1.22736 0.99292 1.04814 0.88167 1.26960 0.94375 0.98496 0.99643 1.70113 1.19782 1.21121 1.25040 0.85127 0.78308 0.78339 0.77584 1.18709 1.19358 1.17726 1.69661 1.25376 1.01125 1.21326 0.89261 0.88969 0.94035 0.81934 0.82857 0.91534 0.89739 0.94350 0.83463 0.83654 0.90516 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -3.16 8.53 71.24 0.61 -2.55 16 2 C -0.04 -1.42 5.88 -19.65 -0.12 -1.54 16 3 C -0.16 -4.45 9.66 22.28 0.22 -4.23 16 4 C 0.10 2.89 7.30 22.43 0.16 3.05 16 5 F -0.14 -3.88 17.26 44.97 0.78 -3.10 16 6 C -0.16 -5.05 9.65 22.28 0.22 -4.84 16 7 C -0.03 -1.20 5.90 -19.65 -0.12 -1.32 16 8 C -0.09 -3.40 8.92 71.23 0.64 -2.76 16 9 C -0.05 -2.18 5.58 -20.04 -0.11 -2.30 16 10 C 0.14 6.64 4.36 42.15 0.18 6.82 16 11 C -0.11 -4.87 9.32 85.09 0.79 -4.07 16 12 N -0.44 -21.28 10.47 -192.05 -2.01 -23.29 16 13 C -0.09 -4.33 10.97 85.31 0.94 -3.39 16 14 C 0.18 9.47 6.52 40.23 0.26 9.73 16 15 C -0.44 -22.00 9.15 23.47 0.21 -21.79 16 16 H 0.10 4.63 7.86 -2.91 -0.02 4.61 16 17 C 0.03 1.38 5.48 85.30 0.47 1.85 16 18 N -0.74 -36.88 11.57 21.84 0.25 -36.62 16 19 Si 0.99 35.25 29.57 68.60 2.03 37.28 16 20 H -0.26 -9.11 7.11 99.48 0.71 -8.40 16 21 H -0.27 -9.30 7.11 99.48 0.71 -8.59 16 22 H -0.25 -8.77 7.11 99.48 0.71 -8.06 16 23 N -0.46 -23.91 6.96 -177.65 -1.24 -25.15 16 24 H 0.09 2.35 7.56 -2.39 -0.02 2.34 16 25 H 0.09 2.14 8.07 -2.39 -0.02 2.12 16 26 H 0.04 1.51 6.78 -2.39 -0.02 1.50 16 27 H 0.16 3.51 8.06 -2.91 -0.02 3.49 16 28 H 0.15 3.92 8.06 -2.91 -0.02 3.89 16 29 H 0.07 2.79 8.14 -2.39 -0.02 2.77 16 30 H 0.08 2.50 8.06 -2.39 -0.02 2.48 16 31 H 0.04 1.63 7.03 -2.39 -0.02 1.61 16 32 H 0.15 5.88 7.18 -2.92 -0.02 5.86 16 33 H 0.15 6.58 8.06 -2.91 -0.02 6.56 16 34 H 0.28 12.85 8.29 -92.71 -0.77 12.09 16 Total: -1.00 -59.24 297.53 5.29 -53.95 By element: Atomic # 1 Polarization: 23.13 SS G_CDS: 1.13 Total: 24.26 kcal Atomic # 6 Polarization: -31.69 SS G_CDS: 4.35 Total: -27.33 kcal Atomic # 7 Polarization: -82.06 SS G_CDS: -2.99 Total: -85.06 kcal Atomic # 9 Polarization: -3.88 SS G_CDS: 0.78 Total: -3.10 kcal Atomic # 14 Polarization: 35.25 SS G_CDS: 2.03 Total: 37.28 kcal Total: -59.24 5.29 -53.95 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001243915599.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.164 kcal (2) G-P(sol) polarization free energy of solvation -59.244 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.080 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.290 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -53.954 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.789 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds