Wall clock time and date at job start Mon Mar 30 2020 01:01:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.37839 * 120.06686 * 2 1 4 4 C 1.38682 * 120.12334 * 180.23339 * 3 2 1 5 5 F 1.35096 * 119.87383 * 179.76597 * 4 3 2 6 6 C 1.38674 * 120.24218 * 359.78872 * 4 3 2 7 7 C 1.37832 * 120.12704 * 359.95468 * 6 4 3 8 8 C 1.50697 * 120.06304 * 179.97438 * 7 6 4 9 9 C 1.39702 * 119.87538 * 0.02562 * 7 6 4 10 10 C 1.47882 * 120.11995 * 179.97438 * 9 7 6 11 11 C 1.40465 * 120.79259 * 115.00007 * 10 9 7 12 12 N 1.31569 * 119.09143 * 180.02562 * 11 10 9 13 13 C 1.33657 * 120.83206 * 359.97438 * 12 11 10 14 14 C 1.41054 * 119.12967 * 179.97438 * 13 12 11 15 15 H 1.08002 * 120.00299 * 0.02562 * 14 13 12 16 16 C 1.40131 * 119.99927 * 179.72272 * 14 13 12 17 17 N 1.30674 * 120.00091 * 0.28250 * 16 14 13 18 18 Si 1.86803 * 119.99972 * 180.28047 * 16 14 13 19 19 H 1.48491 * 109.47369 * 60.00364 * 18 16 14 20 20 H 1.48504 * 109.47032 * 180.02562 * 18 16 14 21 21 H 1.48501 * 109.46993 * 300.00160 * 18 16 14 22 22 N 1.33656 * 121.74011 * 0.25693 * 13 12 11 23 23 C 1.31576 * 120.83173 * 359.47553 * 22 13 12 24 24 H 1.09000 * 109.47245 * 270.25674 * 1 2 3 25 25 H 1.09004 * 109.46467 * 30.25134 * 1 2 3 26 26 H 1.08994 * 109.47361 * 150.25060 * 1 2 3 27 27 H 1.08001 * 119.93572 * 0.02562 * 3 2 1 28 28 H 1.08006 * 119.93289 * 179.97438 * 6 4 3 29 29 H 1.09007 * 109.47522 * 270.02327 * 8 7 6 30 30 H 1.09005 * 109.47343 * 30.01908 * 8 7 6 31 31 H 1.09002 * 109.47575 * 150.02219 * 8 7 6 32 32 H 1.07996 * 120.45378 * 359.97438 * 11 10 9 33 33 H 0.97000 * 119.99522 * 179.97438 * 17 16 14 34 34 H 1.07995 * 120.45401 * 180.25574 * 23 22 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1976 1.1929 0.0000 4 6 3.5844 1.1943 -0.0049 5 9 4.2561 2.3664 -0.0096 6 6 4.2840 -0.0030 -0.0054 7 6 3.6038 -1.2018 -0.0001 8 6 4.3655 -2.5021 -0.0012 9 6 2.2068 -1.2091 0.0053 10 6 1.4714 -2.4922 0.0104 11 6 0.6756 -2.8605 1.1077 12 7 0.0363 -4.0100 1.0771 13 6 0.1368 -4.8218 0.0200 14 6 -0.5637 -6.0460 0.0254 15 1 -1.1716 -6.3167 0.8761 16 6 -0.4760 -6.9083 -1.0757 17 7 0.2592 -6.5808 -2.1051 18 14 -1.4100 -8.5261 -1.0718 19 1 -2.8646 -8.2576 -0.9416 20 1 -1.1516 -9.2499 -2.3426 21 1 -0.9556 -9.3572 0.0719 22 7 0.8880 -4.5066 -1.0396 23 6 1.5517 -3.3713 -1.0821 24 1 -0.3634 0.0046 1.0276 25 1 -0.3632 0.8878 -0.5178 26 1 -0.3634 -0.8922 -0.5099 27 1 1.6576 2.1283 0.0004 28 1 5.3640 0.0039 -0.0096 29 1 4.5448 -2.8173 -1.0292 30 1 5.3193 -2.3649 0.5083 31 1 3.7835 -3.2647 0.5164 32 1 0.5904 -2.2094 1.9651 33 1 0.3202 -7.1779 -2.8671 34 1 2.1536 -3.1210 -1.9431 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001243917455.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:01:00 Heat of formation + Delta-G solvation = 7.666295 kcal Electronic energy + Delta-G solvation = -19875.508785 eV Core-core repulsion = 16687.104193 eV Total energy + Delta-G solvation = -3188.404592 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 272.102 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -48.64107 -39.60783 -38.28710 -34.02053 -33.37732 -32.21849 -31.78345 -29.43488 -27.43875 -26.65382 -25.60696 -22.77099 -22.37580 -20.60599 -20.57802 -17.97884 -16.60889 -16.42551 -16.00074 -15.74565 -15.37053 -15.06010 -14.53245 -13.61889 -13.35713 -13.30549 -12.94695 -12.84099 -12.74165 -12.71305 -12.49784 -12.20730 -11.54332 -11.44780 -11.39420 -11.31511 -10.99783 -10.82143 -10.72207 -10.41858 -9.57064 -9.22724 -9.21581 -8.45810 -8.43601 -7.77921 -7.30008 -6.65502 -4.84563 1.42117 1.51869 2.46129 2.90108 2.97999 3.00603 3.04281 3.78052 3.86071 4.49736 4.51210 4.98373 5.04435 5.29313 5.47488 5.59581 5.70024 5.74886 5.79893 5.82402 5.87094 5.93942 5.98037 6.02245 6.20251 6.35165 6.37401 6.48029 6.55327 6.70399 6.75084 6.90718 7.02756 7.23167 7.24801 7.55603 8.03065 8.36772 8.44235 8.99664 9.98179 10.15801 Molecular weight = 272.10amu Principal moments of inertia in cm(-1) A = 0.038140 B = 0.004396 C = 0.004167 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 733.968029 B = 6367.643439 C = 6718.170646 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.108 4.108 2 C -0.057 4.057 3 C -0.159 4.159 4 C 0.078 3.922 5 F -0.150 7.150 6 C -0.159 4.159 7 C -0.056 4.056 8 C -0.109 4.109 9 C 0.011 3.989 10 C -0.327 4.327 11 C 0.188 3.812 12 N -0.594 5.594 13 C 0.384 3.616 14 C -0.387 4.387 15 H 0.094 0.906 16 C 0.064 3.936 17 N -0.702 5.702 18 Si 0.920 3.080 19 H -0.262 1.262 20 H -0.275 1.275 21 H -0.262 1.262 22 N -0.507 5.507 23 C 0.183 3.817 24 H 0.069 0.931 25 H 0.059 0.941 26 H 0.075 0.925 27 H 0.126 0.874 28 H 0.127 0.873 29 H 0.070 0.930 30 H 0.059 0.941 31 H 0.075 0.925 32 H 0.127 0.873 33 H 0.278 0.722 34 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.922 7.761 0.931 8.746 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C -0.057 4.057 3 C -0.178 4.178 4 C 0.058 3.942 5 F -0.129 7.129 6 C -0.178 4.178 7 C -0.056 4.056 8 C -0.165 4.165 9 C 0.009 3.991 10 C -0.337 4.337 11 C 0.014 3.986 12 N -0.312 5.312 13 C 0.151 3.849 14 C -0.420 4.420 15 H 0.112 0.888 16 C -0.165 4.165 17 N -0.322 5.322 18 Si 0.743 3.257 19 H -0.186 1.186 20 H -0.200 1.200 21 H -0.186 1.186 22 N -0.223 5.223 23 C 0.007 3.993 24 H 0.088 0.912 25 H 0.078 0.922 26 H 0.094 0.906 27 H 0.144 0.856 28 H 0.144 0.856 29 H 0.089 0.911 30 H 0.077 0.923 31 H 0.094 0.906 32 H 0.144 0.856 33 H 0.090 0.910 34 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges 3.437 6.679 0.696 7.544 hybrid contribution 0.397 0.628 -0.104 0.750 sum 3.835 7.308 0.593 8.274 Atomic orbital electron populations 1.20744 0.90692 1.02783 1.02284 1.19917 0.96240 0.91394 0.98189 1.20809 0.91993 0.98865 1.06149 1.17653 0.90094 0.80815 1.05601 1.91436 1.80713 1.46382 1.94367 1.20812 1.00020 0.90856 1.06112 1.19919 0.93235 0.94413 0.98054 1.20748 0.98881 0.94439 1.02449 1.18558 0.91241 0.92285 0.97005 1.19509 1.13719 0.98575 1.01902 1.22564 0.89041 0.92395 0.94587 1.68659 1.27032 1.05901 1.29627 1.19914 0.89348 0.92455 0.83215 1.19388 1.22155 0.98429 1.02075 0.88784 1.26175 0.95153 1.00389 0.94741 1.70113 1.25049 1.33828 1.03226 0.86167 0.80547 0.80211 0.78734 1.18615 1.19981 1.18610 1.69369 1.10578 1.15686 1.26663 1.22962 0.92960 0.89010 0.94385 0.91241 0.92217 0.90588 0.85564 0.85551 0.91117 0.92252 0.90606 0.85599 0.91034 0.85659 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.59 9.08 36.01 0.33 -1.26 16 2 C -0.06 -0.90 5.91 -104.22 -0.62 -1.52 16 3 C -0.16 -2.33 9.67 -39.56 -0.38 -2.71 16 4 C 0.08 1.16 7.31 -39.26 -0.29 0.88 16 5 F -0.15 -2.22 17.26 2.25 0.04 -2.18 16 6 C -0.16 -2.34 9.66 -39.57 -0.38 -2.72 16 7 C -0.06 -0.89 5.91 -104.23 -0.62 -1.51 16 8 C -0.11 -1.62 9.07 36.00 0.33 -1.30 16 9 C 0.01 0.19 5.38 -104.86 -0.56 -0.37 16 10 C -0.33 -6.62 2.97 -104.27 -0.31 -6.93 16 11 C 0.19 4.06 10.19 -16.83 -0.17 3.89 16 12 N -0.59 -14.89 10.34 -12.41 -0.13 -15.02 16 13 C 0.38 10.28 7.35 -158.16 -1.16 9.12 16 14 C -0.39 -10.09 9.35 -37.80 -0.35 -10.44 16 15 H 0.09 2.35 7.85 -52.49 -0.41 1.94 16 16 C 0.06 1.53 5.50 -17.33 -0.10 1.44 16 17 N -0.70 -17.55 11.40 55.56 0.63 -16.91 16 18 Si 0.92 17.62 29.56 -169.99 -5.02 12.60 16 19 H -0.26 -4.96 7.11 56.52 0.40 -4.56 16 20 H -0.28 -5.09 7.11 56.52 0.40 -4.69 16 21 H -0.26 -4.96 7.11 56.52 0.40 -4.56 16 22 N -0.51 -13.20 7.83 -12.41 -0.10 -13.30 16 23 C 0.18 4.11 10.17 -16.82 -0.17 3.93 16 24 H 0.07 0.95 8.14 -51.93 -0.42 0.52 16 25 H 0.06 0.74 8.09 -51.93 -0.42 0.32 16 26 H 0.08 1.29 6.93 -51.93 -0.36 0.93 16 27 H 0.13 1.58 8.06 -52.49 -0.42 1.15 16 28 H 0.13 1.59 8.06 -52.48 -0.42 1.17 16 29 H 0.07 1.01 8.14 -51.93 -0.42 0.59 16 30 H 0.06 0.75 8.09 -51.93 -0.42 0.33 16 31 H 0.08 1.31 6.93 -51.93 -0.36 0.95 16 32 H 0.13 2.39 8.06 -52.49 -0.42 1.96 16 33 H 0.28 6.26 8.29 -40.82 -0.34 5.92 16 34 H 0.13 2.57 8.06 -52.49 -0.42 2.14 16 LS Contribution 299.90 15.07 4.52 4.52 Total: -1.00 -27.52 299.90 -8.16 -35.68 By element: Atomic # 1 Polarization: 7.78 SS G_CDS: -3.64 Total: 4.13 kcal Atomic # 6 Polarization: -5.06 SS G_CDS: -4.46 Total: -9.52 kcal Atomic # 7 Polarization: -45.64 SS G_CDS: 0.41 Total: -45.23 kcal Atomic # 9 Polarization: -2.22 SS G_CDS: 0.04 Total: -2.18 kcal Atomic # 14 Polarization: 17.62 SS G_CDS: -5.02 Total: 12.60 kcal Total LS contribution 4.52 Total: 4.52 kcal Total: -27.52 -8.16 -35.68 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001243917455.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.347 kcal (2) G-P(sol) polarization free energy of solvation -27.523 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 15.824 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.158 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.681 kcal (6) G-S(sol) free energy of system = (1) + (5) 7.666 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds