Wall clock time and date at job start Mon Mar 30 2020 01:00:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.37839 * 120.06686 * 2 1 4 4 C 1.38682 * 120.12334 * 180.23339 * 3 2 1 5 5 F 1.35096 * 119.87383 * 179.76597 * 4 3 2 6 6 C 1.38674 * 120.24218 * 359.78872 * 4 3 2 7 7 C 1.37832 * 120.12704 * 359.95468 * 6 4 3 8 8 C 1.50697 * 120.06304 * 179.97438 * 7 6 4 9 9 C 1.39702 * 119.87538 * 0.02562 * 7 6 4 10 10 C 1.47882 * 120.11995 * 179.97438 * 9 7 6 11 11 C 1.40465 * 120.79259 * 115.00007 * 10 9 7 12 12 N 1.31569 * 119.09143 * 180.02562 * 11 10 9 13 13 C 1.33657 * 120.83206 * 359.97438 * 12 11 10 14 14 C 1.41054 * 119.12967 * 179.97438 * 13 12 11 15 15 H 1.08002 * 120.00299 * 0.02562 * 14 13 12 16 16 C 1.40131 * 119.99927 * 179.72272 * 14 13 12 17 17 N 1.30674 * 120.00091 * 0.28250 * 16 14 13 18 18 Si 1.86803 * 119.99972 * 180.28047 * 16 14 13 19 19 H 1.48491 * 109.47369 * 60.00364 * 18 16 14 20 20 H 1.48504 * 109.47032 * 180.02562 * 18 16 14 21 21 H 1.48501 * 109.46993 * 300.00160 * 18 16 14 22 22 N 1.33656 * 121.74011 * 0.25693 * 13 12 11 23 23 C 1.31576 * 120.83173 * 359.47553 * 22 13 12 24 24 H 1.09000 * 109.47245 * 270.25674 * 1 2 3 25 25 H 1.09004 * 109.46467 * 30.25134 * 1 2 3 26 26 H 1.08994 * 109.47361 * 150.25060 * 1 2 3 27 27 H 1.08001 * 119.93572 * 0.02562 * 3 2 1 28 28 H 1.08006 * 119.93289 * 179.97438 * 6 4 3 29 29 H 1.09007 * 109.47522 * 270.02327 * 8 7 6 30 30 H 1.09005 * 109.47343 * 30.01908 * 8 7 6 31 31 H 1.09002 * 109.47575 * 150.02219 * 8 7 6 32 32 H 1.07996 * 120.45378 * 359.97438 * 11 10 9 33 33 H 0.97000 * 119.99522 * 179.97438 * 17 16 14 34 34 H 1.07995 * 120.45401 * 180.25574 * 23 22 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1976 1.1929 0.0000 4 6 3.5844 1.1943 -0.0049 5 9 4.2561 2.3664 -0.0096 6 6 4.2840 -0.0030 -0.0054 7 6 3.6038 -1.2018 -0.0001 8 6 4.3655 -2.5021 -0.0012 9 6 2.2068 -1.2091 0.0053 10 6 1.4714 -2.4922 0.0104 11 6 0.6756 -2.8605 1.1077 12 7 0.0363 -4.0100 1.0771 13 6 0.1368 -4.8218 0.0200 14 6 -0.5637 -6.0460 0.0254 15 1 -1.1716 -6.3167 0.8761 16 6 -0.4760 -6.9083 -1.0757 17 7 0.2592 -6.5808 -2.1051 18 14 -1.4100 -8.5261 -1.0718 19 1 -2.8646 -8.2576 -0.9416 20 1 -1.1516 -9.2499 -2.3426 21 1 -0.9556 -9.3572 0.0719 22 7 0.8880 -4.5066 -1.0396 23 6 1.5517 -3.3713 -1.0821 24 1 -0.3634 0.0046 1.0276 25 1 -0.3632 0.8878 -0.5178 26 1 -0.3634 -0.8922 -0.5099 27 1 1.6576 2.1283 0.0004 28 1 5.3640 0.0039 -0.0096 29 1 4.5448 -2.8173 -1.0292 30 1 5.3193 -2.3649 0.5083 31 1 3.7835 -3.2647 0.5164 32 1 0.5904 -2.2094 1.9651 33 1 0.3202 -7.1779 -2.8671 34 1 2.1536 -3.1210 -1.9431 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001243917455.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:00:59 Heat of formation + Delta-G solvation = -5.701669 kcal Electronic energy + Delta-G solvation = -19876.088463 eV Core-core repulsion = 16687.104193 eV Total energy + Delta-G solvation = -3188.984270 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 272.102 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -49.82263 -41.17963 -39.80876 -35.78320 -34.61942 -33.82632 -33.51640 -30.98920 -28.93402 -27.84083 -27.18099 -24.55747 -24.01207 -22.02659 -21.81452 -19.79376 -18.01252 -17.78957 -17.47165 -17.17173 -16.85007 -16.52321 -16.15764 -15.06342 -14.62806 -14.55210 -14.50951 -14.37656 -14.02654 -13.98628 -13.92768 -13.75741 -13.09738 -12.90641 -12.84028 -12.66417 -12.62824 -12.21173 -11.97865 -11.92566 -11.29682 -11.10004 -10.98042 -9.98260 -9.64447 -9.47295 -8.98117 -8.43324 -6.73299 0.10253 0.31771 0.75322 1.08451 1.41056 1.53305 1.54491 2.19618 2.58783 2.75185 3.29305 3.77902 3.85252 3.91952 3.98289 4.03231 4.06133 4.19607 4.41516 4.43746 4.61318 4.64480 4.76039 4.78108 4.84590 5.00099 5.03447 5.14091 5.16757 5.24030 5.32522 5.41736 5.43113 5.77628 5.80735 6.03842 6.13581 6.50952 6.60171 7.17849 8.20495 8.34125 Molecular weight = 272.10amu Principal moments of inertia in cm(-1) A = 0.038140 B = 0.004396 C = 0.004167 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 733.968029 B = 6367.643439 C = 6718.170646 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.106 4.106 2 C -0.057 4.057 3 C -0.155 4.155 4 C 0.081 3.919 5 F -0.146 7.146 6 C -0.156 4.156 7 C -0.057 4.057 8 C -0.105 4.105 9 C -0.020 4.020 10 C -0.291 4.291 11 C 0.177 3.823 12 N -0.618 5.618 13 C 0.360 3.640 14 C -0.430 4.430 15 H 0.090 0.910 16 C 0.025 3.975 17 N -0.739 5.739 18 Si 0.998 3.002 19 H -0.258 1.258 20 H -0.262 1.262 21 H -0.258 1.258 22 N -0.537 5.537 23 C 0.168 3.832 24 H 0.079 0.921 25 H 0.085 0.915 26 H 0.044 0.956 27 H 0.152 0.848 28 H 0.151 0.849 29 H 0.074 0.926 30 H 0.086 0.914 31 H 0.045 0.955 32 H 0.153 0.847 33 H 0.286 0.714 34 H 0.140 0.860 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.684 9.308 1.011 10.469 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C -0.057 4.057 3 C -0.173 4.173 4 C 0.062 3.938 5 F -0.125 7.125 6 C -0.174 4.174 7 C -0.058 4.058 8 C -0.162 4.162 9 C -0.022 4.022 10 C -0.301 4.301 11 C 0.005 3.995 12 N -0.338 5.338 13 C 0.125 3.875 14 C -0.464 4.464 15 H 0.108 0.892 16 C -0.199 4.199 17 N -0.361 5.361 18 Si 0.816 3.184 19 H -0.182 1.182 20 H -0.186 1.186 21 H -0.182 1.182 22 N -0.254 5.254 23 C -0.007 4.007 24 H 0.098 0.902 25 H 0.104 0.896 26 H 0.063 0.937 27 H 0.170 0.830 28 H 0.169 0.831 29 H 0.093 0.907 30 H 0.105 0.895 31 H 0.064 0.936 32 H 0.170 0.830 33 H 0.097 0.903 34 H 0.157 0.843 Dipole moment (debyes) X Y Z Total from point charges 4.233 8.290 0.781 9.341 hybrid contribution 0.308 0.445 -0.087 0.548 sum 4.541 8.735 0.694 9.870 Atomic orbital electron populations 1.20731 0.90058 1.02528 1.02896 1.19993 0.96753 0.91215 0.97757 1.21008 0.92047 0.99283 1.05012 1.17794 0.90371 0.81006 1.04665 1.91456 1.80645 1.46153 1.94225 1.20997 1.01304 0.90044 1.05068 1.19976 0.92613 0.95349 0.97818 1.20718 0.99594 0.93199 1.02660 1.18512 0.92039 0.91437 1.00174 1.19627 1.11486 0.98921 1.00051 1.23039 0.88822 0.91834 0.95828 1.68656 1.28392 1.07130 1.29590 1.20253 0.90076 0.93286 0.83913 1.19675 1.23776 0.99615 1.03328 0.89180 1.27053 0.95648 1.03586 0.93617 1.70175 1.26434 1.35489 1.03978 0.85031 0.78884 0.75285 0.79153 1.18232 1.18606 1.18224 1.69313 1.11608 1.17442 1.27038 1.23297 0.92882 0.88854 0.95619 0.90225 0.89591 0.93652 0.82987 0.83095 0.90727 0.89517 0.93593 0.83022 0.90310 0.84256 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -2.90 9.08 71.24 0.65 -2.25 16 2 C -0.06 -1.67 5.91 -19.60 -0.12 -1.79 16 3 C -0.15 -3.99 9.67 22.28 0.22 -3.77 16 4 C 0.08 2.13 7.31 22.48 0.16 2.30 16 5 F -0.15 -3.77 17.26 44.97 0.78 -3.00 16 6 C -0.16 -4.06 9.66 22.28 0.22 -3.84 16 7 C -0.06 -1.71 5.91 -19.61 -0.12 -1.83 16 8 C -0.11 -3.01 9.07 71.24 0.65 -2.36 16 9 C -0.02 -0.67 5.38 -20.02 -0.11 -0.78 16 10 C -0.29 -11.89 2.97 -19.64 -0.06 -11.95 16 11 C 0.18 7.74 10.19 85.28 0.87 8.61 16 12 N -0.62 -32.11 10.34 -193.17 -2.00 -34.11 16 13 C 0.36 20.14 7.35 134.89 0.99 21.13 16 14 C -0.43 -23.45 9.35 23.42 0.22 -23.23 16 15 H 0.09 4.75 7.85 -2.91 -0.02 4.73 16 16 C 0.03 1.26 5.50 85.32 0.47 1.73 16 17 N -0.74 -38.18 11.40 21.85 0.25 -37.93 16 18 Si 1.00 36.72 29.56 68.60 2.03 38.75 16 19 H -0.26 -9.25 7.11 99.48 0.71 -8.54 16 20 H -0.26 -8.97 7.11 99.48 0.71 -8.26 16 21 H -0.26 -9.24 7.11 99.48 0.71 -8.53 16 22 N -0.54 -29.12 7.83 -193.17 -1.51 -30.64 16 23 C 0.17 7.72 10.17 85.27 0.87 8.58 16 24 H 0.08 2.01 8.14 -2.39 -0.02 1.99 16 25 H 0.09 1.88 8.09 -2.38 -0.02 1.87 16 26 H 0.04 1.52 6.93 -2.39 -0.02 1.51 16 27 H 0.15 3.12 8.06 -2.91 -0.02 3.10 16 28 H 0.15 3.18 8.06 -2.91 -0.02 3.15 16 29 H 0.07 2.06 8.14 -2.38 -0.02 2.04 16 30 H 0.09 1.97 8.09 -2.38 -0.02 1.95 16 31 H 0.05 1.58 6.93 -2.39 -0.02 1.57 16 32 H 0.15 5.68 8.06 -2.91 -0.02 5.65 16 33 H 0.29 13.18 8.29 -92.71 -0.77 12.41 16 34 H 0.14 5.82 8.06 -2.91 -0.02 5.80 16 Total: -1.00 -61.52 299.90 5.58 -55.94 By element: Atomic # 1 Polarization: 19.30 SS G_CDS: 1.12 Total: 20.43 kcal Atomic # 6 Polarization: -14.35 SS G_CDS: 4.91 Total: -9.45 kcal Atomic # 7 Polarization: -99.41 SS G_CDS: -3.26 Total: -102.67 kcal Atomic # 9 Polarization: -3.77 SS G_CDS: 0.78 Total: -3.00 kcal Atomic # 14 Polarization: 36.72 SS G_CDS: 2.03 Total: 38.75 kcal Total: -61.52 5.58 -55.94 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001243917455.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.242 kcal (2) G-P(sol) polarization free energy of solvation -61.520 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.278 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.576 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.944 kcal (6) G-S(sol) free energy of system = (1) + (5) -5.702 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds