Wall clock time and date at job start Mon Mar 30 2020 01:06:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50693 * 1 3 3 C 1.38312 * 120.35956 * 2 1 4 4 N 1.31894 * 121.02843 * 179.69917 * 3 2 1 5 5 C 1.31740 * 121.85060 * 0.56958 * 4 3 2 6 6 C 1.39308 * 120.59819 * 359.42975 * 5 4 3 7 7 C 1.48376 * 120.53842 * 180.29308 * 6 5 4 8 8 C 1.39017 * 120.41680 * 64.72921 * 7 6 5 9 9 C 1.40954 * 118.12669 * 179.78753 * 8 7 6 10 10 C 1.41378 * 120.57154 * 180.23047 * 9 8 7 11 11 H 1.08004 * 120.00214 * 203.71706 * 10 9 8 12 12 C 1.39901 * 119.99687 * 23.71642 * 10 9 8 13 13 N 1.30853 * 120.00244 * 17.43550 * 12 10 9 14 14 Si 1.86804 * 119.99682 * 197.43638 * 12 10 9 15 15 H 1.48500 * 109.47452 * 90.00155 * 14 12 10 16 16 H 1.48506 * 109.47085 * 210.00009 * 14 12 10 17 17 H 1.48499 * 109.47099 * 329.99826 * 14 12 10 18 18 C 1.40797 * 118.85614 * 0.48660 * 9 8 7 19 19 N 1.31499 * 120.69764 * 359.74462 * 18 9 8 20 20 C 1.32165 * 122.07476 * 0.02562 * 19 18 9 21 21 F 1.35106 * 119.45891 * 180.02562 * 20 19 18 22 22 C 1.38411 * 120.35860 * 179.97438 * 2 1 3 23 23 C 1.50704 * 120.84137 * 0.02562 * 22 2 1 24 24 H 1.09005 * 109.47485 * 270.02275 * 1 2 3 25 25 H 1.09006 * 109.46954 * 30.02203 * 1 2 3 26 26 H 1.09005 * 109.47554 * 150.02169 * 1 2 3 27 27 H 1.07996 * 119.48774 * 359.97438 * 3 2 1 28 28 H 1.08004 * 119.69804 * 179.71010 * 5 4 3 29 29 H 1.07998 * 120.93063 * 0.02562 * 8 7 6 30 30 H 0.97007 * 120.00325 * 179.97438 * 13 12 10 31 31 H 1.08004 * 119.65359 * 179.77943 * 18 9 8 32 32 H 1.09003 * 109.46907 * 270.02016 * 23 22 2 33 33 H 1.08993 * 109.47129 * 30.01790 * 23 22 2 34 34 H 1.08998 * 109.47121 * 150.02311 * 23 22 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.2060 1.1935 0.0000 4 7 3.5248 1.2089 0.0059 5 6 4.2331 0.0981 0.0010 6 6 3.6032 -1.1445 0.0011 7 6 4.4022 -2.3948 0.0020 8 6 5.2119 -2.7118 1.0867 9 6 5.9465 -3.9138 1.0386 10 6 6.7823 -4.2893 2.1153 11 1 7.6086 -4.9642 1.9477 12 6 6.5389 -3.7865 3.3980 13 7 5.3757 -3.2600 3.6846 14 14 7.8744 -3.8669 4.7016 15 1 8.6976 -2.6322 4.6439 16 1 7.2497 -3.9829 6.0439 17 1 8.7377 -5.0494 4.4536 18 6 5.8380 -4.7314 -0.1025 19 7 5.0614 -4.3845 -1.1054 20 6 4.3551 -3.2675 -1.0924 21 9 3.5737 -2.9631 -2.1517 22 6 2.2065 -1.1943 0.0005 23 6 1.4805 -2.5149 0.0005 24 1 -0.3634 0.0004 1.0277 25 1 -0.3633 0.8898 -0.5142 26 1 -0.3634 -0.8902 -0.5135 27 1 1.6635 2.1273 -0.0004 28 1 5.3118 0.1512 0.0014 29 1 5.2731 -2.0575 1.9437 30 1 5.2068 -2.9117 4.5740 31 1 6.3980 -5.6534 -0.1545 32 1 1.3047 -2.8329 1.0283 33 1 0.5259 -2.4048 -0.5139 34 1 2.0857 -3.2623 -0.5125 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001244155204.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:06:19 Heat of formation + Delta-G solvation = 0.990021 kcal Electronic energy + Delta-G solvation = -20306.749543 eV Core-core repulsion = 17118.055446 eV Total energy + Delta-G solvation = -3188.694097 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 272.102 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -47.66276 -40.02338 -38.24464 -34.33165 -34.16725 -33.24706 -30.56244 -29.46353 -27.64028 -26.66078 -25.59614 -23.25188 -21.94718 -21.14732 -20.46271 -17.54391 -16.69214 -16.53386 -15.99840 -15.90306 -15.27777 -14.72629 -14.54719 -14.22274 -13.49941 -13.08288 -12.93108 -12.63994 -12.55953 -12.38721 -12.29891 -12.19778 -12.05048 -11.85179 -11.67930 -11.40066 -11.30959 -11.06201 -10.76443 -10.22621 -9.56404 -9.27747 -9.06388 -8.65815 -8.46462 -8.15813 -7.64924 -7.09146 -4.69765 1.39692 1.61953 2.27420 2.60448 2.91882 2.95303 2.98276 3.69589 4.11767 4.28668 4.76161 4.98732 5.01492 5.09431 5.18280 5.22468 5.33269 5.56695 5.61378 5.80616 5.88349 5.94584 6.03798 6.04383 6.19534 6.38519 6.44143 6.51191 6.65359 6.76121 6.83516 6.91422 7.09887 7.37862 7.55228 7.68405 8.13433 8.33573 8.40046 8.41174 9.14953 9.82185 Molecular weight = 272.10amu Principal moments of inertia in cm(-1) A = 0.019043 B = 0.006373 C = 0.005422 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1470.035741 B = 4392.644704 C = 5163.341744 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.107 4.107 2 C -0.145 4.145 3 C 0.086 3.914 4 N -0.488 5.488 5 C 0.104 3.896 6 C -0.060 4.060 7 C -0.096 4.096 8 C -0.097 4.097 9 C 0.056 3.944 10 C -0.438 4.438 11 H 0.089 0.911 12 C 0.073 3.927 13 N -0.781 5.781 14 Si 0.916 3.084 15 H -0.264 1.264 16 H -0.275 1.275 17 H -0.258 1.258 18 C 0.009 3.991 19 N -0.487 5.487 20 C 0.161 3.839 21 F -0.145 7.145 22 C -0.025 4.025 23 C -0.120 4.120 24 H 0.069 0.931 25 H 0.065 0.935 26 H 0.070 0.930 27 H 0.148 0.852 28 H 0.154 0.846 29 H 0.138 0.862 30 H 0.288 0.712 31 H 0.139 0.861 32 H 0.075 0.925 33 H 0.068 0.932 34 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.438 4.409 -0.428 7.014 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C -0.147 4.147 3 C -0.071 4.071 4 N -0.196 5.196 5 C -0.052 4.052 6 C -0.063 4.063 7 C -0.101 4.101 8 C -0.122 4.122 9 C 0.052 3.948 10 C -0.466 4.466 11 H 0.108 0.892 12 C -0.147 4.147 13 N -0.405 5.405 14 Si 0.740 3.260 15 H -0.189 1.189 16 H -0.200 1.200 17 H -0.182 1.182 18 C -0.152 4.152 19 N -0.198 5.198 20 C 0.008 3.992 21 F -0.125 7.125 22 C -0.033 4.033 23 C -0.176 4.176 24 H 0.088 0.912 25 H 0.084 0.916 26 H 0.088 0.912 27 H 0.166 0.834 28 H 0.171 0.829 29 H 0.156 0.844 30 H 0.099 0.901 31 H 0.156 0.844 32 H 0.093 0.907 33 H 0.086 0.914 34 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges -5.244 4.804 -0.986 7.180 hybrid contribution 0.030 -0.248 1.241 1.266 sum -5.215 4.556 0.255 6.930 Atomic orbital electron populations 1.20717 0.90685 1.02769 1.02267 1.20636 0.97148 0.93537 1.03372 1.22496 0.90109 0.96896 0.97628 1.67576 1.07965 1.31314 1.12782 1.22815 1.00059 0.86646 0.95688 1.19648 0.92768 0.94274 0.99606 1.18935 1.01262 0.94111 0.95766 1.21704 0.97076 0.97066 0.96362 1.18478 0.92062 0.90818 0.93484 1.19601 1.11491 1.24039 0.91518 0.89248 1.26037 0.95874 0.92612 1.00219 1.69769 1.20716 1.27263 1.22767 0.86154 0.80862 0.80245 0.78740 1.18916 1.20039 1.18205 1.22297 1.01507 1.00117 0.91306 1.66284 1.07128 1.15873 1.30558 1.17442 1.00570 0.95337 0.85890 1.91402 1.72550 1.92566 1.55996 1.20215 0.92737 0.95425 0.94938 1.20914 0.99889 0.94092 1.02748 0.91200 0.91600 0.91154 0.83444 0.82884 0.84406 0.90122 0.84357 0.90655 0.91356 0.90202 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.21 9.65 36.00 0.35 -0.87 16 2 C -0.14 -2.25 5.89 -104.53 -0.62 -2.86 16 3 C 0.09 1.35 10.85 -17.50 -0.19 1.16 16 4 N -0.49 -8.86 10.35 -12.97 -0.13 -9.00 16 5 C 0.10 2.01 10.91 -17.19 -0.19 1.82 16 6 C -0.06 -1.23 5.03 -104.75 -0.53 -1.76 16 7 C -0.10 -2.18 4.70 -104.75 -0.49 -2.68 16 8 C -0.10 -2.31 8.51 -38.26 -0.33 -2.64 16 9 C 0.06 1.37 5.59 -106.71 -0.60 0.77 16 10 C -0.44 -10.28 9.08 -37.77 -0.34 -10.62 16 11 H 0.09 1.97 7.90 -52.48 -0.41 1.56 16 12 C 0.07 1.63 5.18 -17.35 -0.09 1.54 16 13 N -0.78 -18.23 10.92 55.54 0.61 -17.62 16 14 Si 0.92 16.82 29.59 -169.99 -5.03 11.79 16 15 H -0.26 -4.85 7.11 56.52 0.40 -4.45 16 16 H -0.28 -5.00 7.11 56.52 0.40 -4.60 16 17 H -0.26 -4.67 7.11 56.52 0.40 -4.27 16 18 C 0.01 0.22 10.96 -16.73 -0.18 0.03 16 19 N -0.49 -11.85 10.33 -12.59 -0.13 -11.98 16 20 C 0.16 3.82 7.00 -16.73 -0.12 3.71 16 21 F -0.15 -3.33 15.61 2.25 0.04 -3.30 16 22 C -0.03 -0.46 5.79 -103.99 -0.60 -1.07 16 23 C -0.12 -2.03 9.20 36.01 0.33 -1.70 16 24 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 25 H 0.07 0.61 8.09 -51.93 -0.42 0.19 16 26 H 0.07 0.76 6.07 -51.93 -0.32 0.45 16 27 H 0.15 1.80 8.06 -52.49 -0.42 1.38 16 28 H 0.15 2.78 8.06 -52.48 -0.42 2.36 16 29 H 0.14 3.38 6.19 -52.49 -0.33 3.05 16 30 H 0.29 6.13 8.30 -40.82 -0.34 5.79 16 31 H 0.14 2.92 8.06 -52.48 -0.42 2.50 16 32 H 0.07 1.24 8.14 -51.93 -0.42 0.82 16 33 H 0.07 0.95 6.08 -51.93 -0.32 0.63 16 34 H 0.08 1.55 4.96 -51.93 -0.26 1.29 16 LS Contribution 294.51 15.07 4.44 4.44 Total: -1.00 -26.72 294.51 -7.10 -33.82 By element: Atomic # 1 Polarization: 10.30 SS G_CDS: -3.30 Total: 7.00 kcal Atomic # 6 Polarization: -11.56 SS G_CDS: -3.59 Total: -15.15 kcal Atomic # 7 Polarization: -38.94 SS G_CDS: 0.34 Total: -38.60 kcal Atomic # 9 Polarization: -3.33 SS G_CDS: 0.04 Total: -3.30 kcal Atomic # 14 Polarization: 16.82 SS G_CDS: -5.03 Total: 11.79 kcal Total LS contribution 4.44 Total: 4.44 kcal Total: -26.72 -7.10 -33.82 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001244155204.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.810 kcal (2) G-P(sol) polarization free energy of solvation -26.718 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 8.093 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.103 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.820 kcal (6) G-S(sol) free energy of system = (1) + (5) 0.990 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds