Wall clock time and date at job start Mon Mar 30 2020 01:06:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50693 * 1 3 3 C 1.38312 * 120.35956 * 2 1 4 4 N 1.31894 * 121.02843 * 179.69917 * 3 2 1 5 5 C 1.31740 * 121.85060 * 0.56958 * 4 3 2 6 6 C 1.39308 * 120.59819 * 359.42975 * 5 4 3 7 7 C 1.48376 * 120.53842 * 180.29308 * 6 5 4 8 8 C 1.39017 * 120.41680 * 64.72921 * 7 6 5 9 9 C 1.40954 * 118.12669 * 179.78753 * 8 7 6 10 10 C 1.41378 * 120.57154 * 180.23047 * 9 8 7 11 11 H 1.08004 * 120.00214 * 203.71706 * 10 9 8 12 12 C 1.39901 * 119.99687 * 23.71642 * 10 9 8 13 13 N 1.30853 * 120.00244 * 17.43550 * 12 10 9 14 14 Si 1.86804 * 119.99682 * 197.43638 * 12 10 9 15 15 H 1.48500 * 109.47452 * 90.00155 * 14 12 10 16 16 H 1.48506 * 109.47085 * 210.00009 * 14 12 10 17 17 H 1.48499 * 109.47099 * 329.99826 * 14 12 10 18 18 C 1.40797 * 118.85614 * 0.48660 * 9 8 7 19 19 N 1.31499 * 120.69764 * 359.74462 * 18 9 8 20 20 C 1.32165 * 122.07476 * 0.02562 * 19 18 9 21 21 F 1.35106 * 119.45891 * 180.02562 * 20 19 18 22 22 C 1.38411 * 120.35860 * 179.97438 * 2 1 3 23 23 C 1.50704 * 120.84137 * 0.02562 * 22 2 1 24 24 H 1.09005 * 109.47485 * 270.02275 * 1 2 3 25 25 H 1.09006 * 109.46954 * 30.02203 * 1 2 3 26 26 H 1.09005 * 109.47554 * 150.02169 * 1 2 3 27 27 H 1.07996 * 119.48774 * 359.97438 * 3 2 1 28 28 H 1.08004 * 119.69804 * 179.71010 * 5 4 3 29 29 H 1.07998 * 120.93063 * 0.02562 * 8 7 6 30 30 H 0.97007 * 120.00325 * 179.97438 * 13 12 10 31 31 H 1.08004 * 119.65359 * 179.77943 * 18 9 8 32 32 H 1.09003 * 109.46907 * 270.02016 * 23 22 2 33 33 H 1.08993 * 109.47129 * 30.01790 * 23 22 2 34 34 H 1.08998 * 109.47121 * 150.02311 * 23 22 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.2060 1.1935 0.0000 4 7 3.5248 1.2089 0.0059 5 6 4.2331 0.0981 0.0010 6 6 3.6032 -1.1445 0.0011 7 6 4.4022 -2.3948 0.0020 8 6 5.2119 -2.7118 1.0867 9 6 5.9465 -3.9138 1.0386 10 6 6.7823 -4.2893 2.1153 11 1 7.6086 -4.9642 1.9477 12 6 6.5389 -3.7865 3.3980 13 7 5.3757 -3.2600 3.6846 14 14 7.8744 -3.8669 4.7016 15 1 8.6976 -2.6322 4.6439 16 1 7.2497 -3.9829 6.0439 17 1 8.7377 -5.0494 4.4536 18 6 5.8380 -4.7314 -0.1025 19 7 5.0614 -4.3845 -1.1054 20 6 4.3551 -3.2675 -1.0924 21 9 3.5737 -2.9631 -2.1517 22 6 2.2065 -1.1943 0.0005 23 6 1.4805 -2.5149 0.0005 24 1 -0.3634 0.0004 1.0277 25 1 -0.3633 0.8898 -0.5142 26 1 -0.3634 -0.8902 -0.5135 27 1 1.6635 2.1273 -0.0004 28 1 5.3118 0.1512 0.0014 29 1 5.2731 -2.0575 1.9437 30 1 5.2068 -2.9117 4.5740 31 1 6.3980 -5.6534 -0.1545 32 1 1.3047 -2.8329 1.0283 33 1 0.5259 -2.4048 -0.5139 34 1 2.0857 -3.2623 -0.5125 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001244155204.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:06:18 Heat of formation + Delta-G solvation = -12.907125 kcal Electronic energy + Delta-G solvation = -20307.352169 eV Core-core repulsion = 17118.055446 eV Total energy + Delta-G solvation = -3189.296722 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 272.102 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -49.48316 -41.41833 -40.00167 -36.05940 -35.54613 -34.71296 -32.34127 -31.00717 -29.01991 -27.85044 -27.40388 -24.84038 -23.70956 -22.54450 -22.00058 -19.29331 -18.52597 -18.03759 -17.55499 -17.36388 -16.94418 -16.48975 -16.04920 -15.48965 -15.11185 -14.42123 -14.31830 -14.20736 -13.95651 -13.87875 -13.75283 -13.65478 -13.60525 -13.50457 -13.08976 -12.90875 -12.72825 -12.50534 -12.25014 -11.83882 -11.26818 -10.77540 -10.61587 -10.21206 -10.06342 -9.78080 -9.38578 -8.81977 -6.52940 -0.03388 0.23935 0.55503 0.79688 1.40546 1.49010 1.54618 2.15010 2.52798 2.76272 3.22274 3.43098 3.44993 3.69969 3.80124 3.84499 4.06188 4.23094 4.31685 4.53138 4.58673 4.60855 4.67941 4.80386 4.82158 4.91002 5.03099 5.06034 5.10231 5.14904 5.29045 5.44963 5.55897 5.69787 5.78513 5.89105 6.32783 6.58193 6.61672 6.96954 7.29923 8.11899 Molecular weight = 272.10amu Principal moments of inertia in cm(-1) A = 0.019043 B = 0.006373 C = 0.005422 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1470.035741 B = 4392.644704 C = 5163.341744 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.106 4.106 2 C -0.135 4.135 3 C 0.088 3.912 4 N -0.501 5.501 5 C 0.090 3.910 6 C -0.092 4.092 7 C -0.081 4.081 8 C -0.116 4.116 9 C 0.038 3.962 10 C -0.456 4.456 11 H 0.100 0.900 12 C 0.037 3.963 13 N -0.807 5.807 14 Si 0.989 3.011 15 H -0.262 1.262 16 H -0.269 1.269 17 H -0.251 1.251 18 C -0.003 4.003 19 N -0.500 5.500 20 C 0.141 3.859 21 F -0.145 7.145 22 C -0.042 4.042 23 C -0.116 4.116 24 H 0.085 0.915 25 H 0.093 0.907 26 H 0.076 0.924 27 H 0.190 0.810 28 H 0.150 0.850 29 H 0.127 0.873 30 H 0.296 0.704 31 H 0.157 0.843 32 H 0.074 0.926 33 H 0.101 0.899 34 H 0.049 0.951 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.551 5.481 0.496 8.556 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C -0.137 4.137 3 C -0.069 4.069 4 N -0.209 5.209 5 C -0.065 4.065 6 C -0.095 4.095 7 C -0.086 4.086 8 C -0.141 4.141 9 C 0.033 3.967 10 C -0.484 4.484 11 H 0.118 0.882 12 C -0.181 4.181 13 N -0.431 5.431 14 Si 0.809 3.191 15 H -0.187 1.187 16 H -0.194 1.194 17 H -0.174 1.174 18 C -0.164 4.164 19 N -0.212 5.212 20 C -0.012 4.012 21 F -0.124 7.124 22 C -0.050 4.050 23 C -0.172 4.172 24 H 0.103 0.897 25 H 0.112 0.888 26 H 0.095 0.905 27 H 0.207 0.793 28 H 0.167 0.833 29 H 0.145 0.855 30 H 0.107 0.893 31 H 0.175 0.825 32 H 0.093 0.907 33 H 0.119 0.881 34 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges -6.368 5.872 -0.083 8.663 hybrid contribution 0.271 -0.517 0.963 1.127 sum -6.098 5.355 0.880 8.163 Atomic orbital electron populations 1.20839 0.87153 1.04513 1.03722 1.21093 0.99532 0.92184 1.00918 1.23248 0.89392 0.98759 0.95491 1.67621 1.09420 1.30551 1.13290 1.22760 1.00243 0.86842 0.96692 1.19688 0.93930 0.93514 1.02385 1.19034 1.00279 0.94649 0.94603 1.21635 0.98562 0.97240 0.96663 1.18790 0.92521 0.91198 0.94202 1.19945 1.11703 1.24691 0.92090 0.88249 1.26903 0.97753 0.91586 1.01900 1.69819 1.22369 1.27120 1.23748 0.85069 0.77808 0.80356 0.75886 1.18717 1.19361 1.17380 1.22580 1.01893 1.00844 0.91132 1.66263 1.07527 1.16412 1.31018 1.17598 1.01273 0.95845 0.86478 1.91382 1.72567 1.92585 1.55914 1.20488 0.92073 0.97103 0.95291 1.20890 1.00745 0.92804 1.02731 0.89653 0.88791 0.90537 0.79309 0.83292 0.85522 0.89320 0.82544 0.90699 0.88074 0.93214 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.94 9.65 71.23 0.69 -1.25 16 2 C -0.14 -3.85 5.89 -19.81 -0.12 -3.96 16 3 C 0.09 2.52 10.85 84.70 0.92 3.44 16 4 N -0.50 -17.68 10.35 -194.95 -2.02 -19.70 16 5 C 0.09 3.55 10.91 84.96 0.93 4.48 16 6 C -0.09 -3.85 5.03 -19.95 -0.10 -3.95 16 7 C -0.08 -3.83 4.70 -19.95 -0.09 -3.93 16 8 C -0.12 -5.76 8.51 23.12 0.20 -5.56 16 9 C 0.04 1.89 5.59 -21.22 -0.12 1.77 16 10 C -0.46 -21.67 9.08 23.45 0.21 -21.45 16 11 H 0.10 4.38 7.90 -2.91 -0.02 4.36 16 12 C 0.04 1.64 5.18 85.24 0.44 2.08 16 13 N -0.81 -37.98 10.92 21.82 0.24 -37.74 16 14 Si 0.99 33.74 29.59 68.60 2.03 35.77 16 15 H -0.26 -8.85 7.11 99.48 0.71 -8.15 16 16 H -0.27 -8.86 7.11 99.48 0.71 -8.15 16 17 H -0.25 -8.19 7.11 99.48 0.71 -7.49 16 18 C 0.00 -0.13 10.96 85.37 0.94 0.80 16 19 N -0.50 -25.12 10.33 -193.73 -2.00 -27.12 16 20 C 0.14 6.93 7.00 85.08 0.60 7.52 16 21 F -0.14 -6.82 15.61 44.97 0.70 -6.12 16 22 C -0.04 -1.50 5.79 -19.45 -0.11 -1.61 16 23 C -0.12 -3.85 9.20 71.24 0.66 -3.20 16 24 H 0.08 1.38 8.14 -2.38 -0.02 1.37 16 25 H 0.09 1.25 8.09 -2.38 -0.02 1.23 16 26 H 0.08 1.34 6.07 -2.38 -0.01 1.33 16 27 H 0.19 3.73 8.06 -2.91 -0.02 3.71 16 28 H 0.15 5.71 8.06 -2.91 -0.02 5.69 16 29 H 0.13 6.51 6.19 -2.91 -0.02 6.49 16 30 H 0.30 12.58 8.30 -92.70 -0.77 11.81 16 31 H 0.16 6.74 8.06 -2.91 -0.02 6.72 16 32 H 0.07 2.45 8.14 -2.39 -0.02 2.44 16 33 H 0.10 2.60 6.08 -2.39 -0.01 2.59 16 34 H 0.05 1.96 4.96 -2.39 -0.01 1.95 16 Total: -1.00 -58.96 294.51 5.12 -53.84 By element: Atomic # 1 Polarization: 24.74 SS G_CDS: 1.14 Total: 25.88 kcal Atomic # 6 Polarization: -29.84 SS G_CDS: 5.03 Total: -24.81 kcal Atomic # 7 Polarization: -80.78 SS G_CDS: -3.78 Total: -84.56 kcal Atomic # 9 Polarization: -6.82 SS G_CDS: 0.70 Total: -6.12 kcal Atomic # 14 Polarization: 33.74 SS G_CDS: 2.03 Total: 35.77 kcal Total: -58.96 5.12 -53.84 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001244155204.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.933 kcal (2) G-P(sol) polarization free energy of solvation -58.960 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.028 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.120 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -53.840 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.907 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds