Wall clock time and date at job start Mon Mar 30 2020 01:00:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.37880 * 120.02602 * 2 1 4 4 C 1.38994 * 120.04753 * 180.02562 * 3 2 1 5 5 N 1.39576 * 119.95517 * 180.02562 * 4 3 2 6 6 C 1.39042 * 120.09299 * 359.97438 * 4 3 2 7 7 C 1.37837 * 120.04932 * 359.74630 * 6 4 3 8 8 C 1.39388 * 120.02325 * 180.02562 * 2 1 3 9 9 C 1.48343 * 120.04755 * 359.95420 * 8 2 1 10 10 C 1.39025 * 120.42184 * 245.00249 * 9 8 2 11 11 C 1.40944 * 118.12939 * 180.02562 * 10 9 8 12 12 C 1.41372 * 120.57236 * 180.02562 * 11 10 9 13 13 H 1.08004 * 120.00314 * 203.54118 * 12 11 10 14 14 C 1.39901 * 120.00064 * 23.54809 * 12 11 10 15 15 N 1.30861 * 119.99562 * 17.61171 * 14 12 11 16 16 Si 1.86793 * 120.00284 * 197.61044 * 14 12 11 17 17 H 1.48506 * 109.47086 * 359.97438 * 16 14 12 18 18 H 1.48499 * 109.47187 * 119.99735 * 16 14 12 19 19 H 1.48496 * 109.47279 * 239.99845 * 16 14 12 20 20 C 1.40808 * 118.85834 * 0.02562 * 11 10 9 21 21 N 1.31508 * 120.69878 * 359.97438 * 20 11 10 22 22 C 1.32151 * 122.07761 * 0.02562 * 21 20 11 23 23 F 1.35109 * 119.45909 * 179.97438 * 22 21 20 24 24 H 1.08998 * 109.46785 * 269.97339 * 1 2 3 25 25 H 1.08993 * 109.47084 * 29.97257 * 1 2 3 26 26 H 1.08995 * 109.46882 * 149.97642 * 1 2 3 27 27 H 1.07997 * 119.97601 * 0.02638 * 3 2 1 28 28 H 0.97003 * 119.99524 * 359.97438 * 5 4 3 29 29 H 0.96994 * 120.00533 * 179.97438 * 5 4 3 30 30 H 1.08000 * 119.97584 * 179.97438 * 6 4 3 31 31 H 1.07996 * 120.02843 * 180.27073 * 7 6 4 32 32 H 1.08006 * 120.93508 * 0.03967 * 10 9 8 33 33 H 0.96998 * 120.00214 * 180.02562 * 15 14 12 34 34 H 1.07994 * 119.65142 * 179.72301 * 20 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1970 1.1938 0.0000 4 6 3.5869 1.1943 -0.0005 5 7 4.2834 2.4039 0.0000 6 6 4.2845 -0.0085 -0.0005 7 6 3.5988 -1.2041 0.0053 8 6 2.2045 -1.2069 -0.0005 9 6 1.4643 -2.4925 -0.0001 10 6 1.5529 -3.3554 1.0864 11 6 0.8300 -4.5642 1.0355 12 6 0.8825 -5.4793 2.1118 13 1 0.6664 -6.5240 1.9436 14 6 1.2141 -5.0315 3.3951 15 7 1.1392 -3.7572 3.6830 16 14 1.7638 -6.2526 4.6974 17 1 1.7635 -7.6222 4.1233 18 1 3.1341 -5.9068 5.1533 19 1 0.8303 -6.1997 5.8510 20 6 0.0546 -4.8449 -0.1059 21 7 0.0036 -3.9953 -1.1084 22 6 0.6681 -2.8530 -1.0949 23 9 0.5780 -2.0193 -2.1542 24 1 -0.3633 -0.0005 1.0277 25 1 -0.3633 0.8902 -0.5134 26 1 -0.3633 -0.8897 -0.5142 27 1 1.6570 2.1291 0.0004 28 1 3.7973 3.2433 0.0004 29 1 5.2533 2.4051 0.0000 30 1 5.3645 -0.0059 -0.0014 31 1 4.1410 -2.1381 0.0097 32 1 2.1584 -3.1063 1.9453 33 1 1.3695 -3.4466 4.5726 34 1 -0.5008 -5.7694 -0.1604 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001244373252.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:00:50 Heat of formation + Delta-G solvation = -20.455727 kcal Electronic energy + Delta-G solvation = -20161.791996 eV Core-core repulsion = 16972.167942 eV Total energy + Delta-G solvation = -3189.624054 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 272.102 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -49.37714 -40.71076 -39.67740 -36.10734 -35.89580 -33.30329 -32.73071 -31.98217 -28.93536 -27.65132 -27.33350 -24.37016 -23.42741 -22.77866 -21.58508 -19.27889 -18.43843 -17.91283 -17.59450 -17.44509 -17.01229 -16.58028 -16.32918 -15.20943 -15.13266 -14.73811 -14.60708 -14.23881 -14.06393 -13.90255 -13.78419 -13.58968 -13.38905 -13.25951 -12.95723 -12.84869 -12.58062 -12.25530 -11.91797 -11.78524 -11.27168 -11.20462 -10.26196 -10.13782 -9.62425 -9.46914 -8.75629 -8.22614 -6.47029 0.35146 0.55216 0.76588 0.94277 1.42209 1.49415 1.58363 2.18318 2.59115 2.93545 3.05797 3.33665 3.51973 3.92581 3.99673 4.11489 4.32639 4.39974 4.59293 4.68945 4.70403 4.74839 4.94665 5.00083 5.02589 5.11141 5.17383 5.25963 5.42433 5.55983 5.66702 5.78914 5.90488 5.96401 6.00591 6.41595 6.65171 6.66871 6.68159 7.09126 7.38025 8.18495 Molecular weight = 272.10amu Principal moments of inertia in cm(-1) A = 0.018115 B = 0.006304 C = 0.005160 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1545.271924 B = 4440.362206 C = 5424.850108 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.115 4.115 2 C -0.032 4.032 3 C -0.203 4.203 4 C 0.220 3.780 5 N -0.863 5.863 6 C -0.205 4.205 7 C -0.067 4.067 8 C -0.118 4.118 9 C -0.070 4.070 10 C -0.122 4.122 11 C 0.037 3.963 12 C -0.462 4.462 13 H 0.096 0.904 14 C 0.036 3.964 15 N -0.808 5.808 16 Si 0.989 3.011 17 H -0.252 1.252 18 H -0.265 1.265 19 H -0.265 1.265 20 C -0.011 4.011 21 N -0.504 5.504 22 C 0.137 3.863 23 F -0.145 7.145 24 H 0.065 0.935 25 H 0.087 0.913 26 H 0.046 0.954 27 H 0.143 0.857 28 H 0.407 0.593 29 H 0.408 0.592 30 H 0.144 0.856 31 H 0.116 0.884 32 H 0.127 0.873 33 H 0.295 0.705 34 H 0.153 0.847 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.587 9.202 0.393 11.323 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C -0.033 4.033 3 C -0.226 4.226 4 C 0.114 3.886 5 N -0.403 5.403 6 C -0.228 4.228 7 C -0.085 4.085 8 C -0.121 4.121 9 C -0.074 4.074 10 C -0.147 4.147 11 C 0.033 3.967 12 C -0.491 4.491 13 H 0.114 0.886 14 C -0.181 4.181 15 N -0.432 5.432 16 Si 0.809 3.191 17 H -0.175 1.175 18 H -0.189 1.189 19 H -0.190 1.190 20 C -0.173 4.173 21 N -0.217 5.217 22 C -0.016 4.016 23 F -0.125 7.125 24 H 0.084 0.916 25 H 0.106 0.894 26 H 0.065 0.935 27 H 0.161 0.839 28 H 0.237 0.763 29 H 0.238 0.762 30 H 0.162 0.838 31 H 0.134 0.866 32 H 0.145 0.855 33 H 0.106 0.894 34 H 0.170 0.830 Dipole moment (debyes) X Y Z Total from point charges 6.092 9.228 -0.196 11.059 hybrid contribution 0.512 -0.038 0.942 1.073 sum 6.604 9.190 0.747 11.341 Atomic orbital electron populations 1.20837 0.91613 1.02786 1.01963 1.19786 0.95907 0.92043 0.95523 1.20490 0.92546 0.97530 1.11995 1.17783 0.91096 0.87387 0.92328 1.42303 1.09370 1.04169 1.84474 1.20632 1.00272 0.90395 1.11457 1.20993 0.92433 0.98429 0.96688 1.18466 0.93535 0.91194 1.08883 1.19235 0.98658 0.95804 0.93661 1.21671 1.01117 0.95103 0.96853 1.18815 0.90289 0.93525 0.94104 1.19921 1.40417 0.96485 0.92236 0.88617 1.26898 0.91763 0.97661 1.01813 1.69849 1.32445 1.17364 1.23532 0.85036 0.78690 0.78793 0.76591 1.17538 1.18915 1.19017 1.22505 1.03802 0.99495 0.91453 1.66218 1.21234 1.03083 1.31126 1.17735 1.06736 0.90406 0.86705 1.91372 1.95878 1.69299 1.55919 0.91606 0.89412 0.93491 0.83948 0.76295 0.76243 0.83782 0.86630 0.85531 0.89404 0.82971 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -4.25 9.49 71.24 0.68 -3.58 16 2 C -0.03 -1.20 5.75 -19.67 -0.11 -1.32 16 3 C -0.20 -6.11 9.53 22.37 0.21 -5.90 16 4 C 0.22 5.90 6.75 38.28 0.26 6.16 16 5 N -0.86 -14.66 9.08 -51.30 -0.47 -15.12 16 6 C -0.21 -6.04 9.88 22.37 0.22 -5.82 16 7 C -0.07 -2.48 9.72 22.46 0.22 -2.26 16 8 C -0.12 -5.03 5.03 -20.02 -0.10 -5.13 16 9 C -0.07 -3.44 4.62 -19.95 -0.09 -3.53 16 10 C -0.12 -6.31 8.50 23.12 0.20 -6.12 16 11 C 0.04 1.95 5.59 -21.22 -0.12 1.83 16 12 C -0.46 -22.85 9.08 23.44 0.21 -22.64 16 13 H 0.10 4.42 7.90 -2.91 -0.02 4.40 16 14 C 0.04 1.68 5.17 85.24 0.44 2.12 16 15 N -0.81 -39.20 10.92 21.82 0.24 -38.96 16 16 Si 0.99 34.66 29.59 68.60 2.03 36.69 16 17 H -0.25 -8.57 7.11 99.48 0.71 -7.86 16 18 H -0.26 -9.00 7.11 99.48 0.71 -8.29 16 19 H -0.27 -8.98 7.11 99.48 0.71 -8.27 16 20 C -0.01 -0.57 10.96 85.37 0.94 0.37 16 21 N -0.50 -26.50 10.33 -193.70 -2.00 -28.50 16 22 C 0.14 7.06 6.92 85.09 0.59 7.64 16 23 F -0.14 -7.14 15.56 44.97 0.70 -6.44 16 24 H 0.07 2.40 8.14 -2.39 -0.02 2.38 16 25 H 0.09 2.61 8.08 -2.39 -0.02 2.59 16 26 H 0.05 2.01 4.75 -2.39 -0.01 2.00 16 27 H 0.14 3.40 8.06 -2.91 -0.02 3.38 16 28 H 0.41 5.20 8.84 -92.71 -0.82 4.38 16 29 H 0.41 5.14 8.84 -92.71 -0.82 4.32 16 30 H 0.14 3.30 8.06 -2.91 -0.02 3.28 16 31 H 0.12 4.24 8.06 -2.91 -0.02 4.21 16 32 H 0.13 6.71 6.19 -2.91 -0.02 6.70 16 33 H 0.29 12.83 8.30 -92.71 -0.77 12.06 16 34 H 0.15 6.94 8.06 -2.91 -0.02 6.92 16 Total: -1.00 -61.90 297.07 3.57 -58.33 By element: Atomic # 1 Polarization: 32.66 SS G_CDS: -0.47 Total: 32.18 kcal Atomic # 6 Polarization: -41.72 SS G_CDS: 3.54 Total: -38.18 kcal Atomic # 7 Polarization: -80.36 SS G_CDS: -2.23 Total: -82.59 kcal Atomic # 9 Polarization: -7.14 SS G_CDS: 0.70 Total: -6.44 kcal Atomic # 14 Polarization: 34.66 SS G_CDS: 2.03 Total: 36.69 kcal Total: -61.90 3.57 -58.33 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001244373252.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.875 kcal (2) G-P(sol) polarization free energy of solvation -61.897 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.021 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.566 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.331 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.456 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds