Wall clock time and date at job start Mon Mar 30 2020 01:01:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 C 1.38416 * 119.83790 * 2 1 4 4 C 1.38018 * 120.27659 * 179.73978 * 3 2 1 5 5 C 1.39281 * 119.95219 * 0.58059 * 4 3 2 6 6 C 1.48285 * 120.16087 * 179.69813 * 5 4 3 7 7 C 1.39041 * 120.42722 * 64.74654 * 6 5 4 8 8 C 1.40946 * 118.12872 * 179.97438 * 7 6 5 9 9 C 1.41377 * 120.56819 * 179.97438 * 8 7 6 10 10 H 1.07999 * 119.99797 * 203.56497 * 9 8 7 11 11 C 1.39892 * 120.00177 * 23.56544 * 9 8 7 12 12 N 1.30865 * 120.00013 * 17.58634 * 11 9 8 13 13 Si 1.86795 * 120.00092 * 197.58733 * 11 9 8 14 14 H 1.48511 * 109.47001 * 90.00025 * 13 11 9 15 15 H 1.48496 * 109.47487 * 209.99994 * 13 11 9 16 16 H 1.48496 * 109.47242 * 330.00054 * 13 11 9 17 17 C 1.40802 * 118.85757 * 0.02562 * 8 7 6 18 18 N 1.31509 * 120.70729 * 359.97438 * 17 8 7 19 19 C 1.32147 * 122.07982 * 359.97438 * 18 17 8 20 20 F 1.35100 * 119.46381 * 180.27394 * 19 18 17 21 21 C 1.39977 * 119.67672 * 359.42167 * 5 4 3 22 22 N 1.39483 * 120.13747 * 180.29766 * 21 5 4 23 23 C 1.38139 * 119.83900 * 180.02562 * 2 1 3 24 24 H 1.08997 * 109.47112 * 269.97694 * 1 2 3 25 25 H 1.09002 * 109.47221 * 29.97673 * 1 2 3 26 26 H 1.09004 * 109.47238 * 149.98209 * 1 2 3 27 27 H 1.07997 * 119.85856 * 0.04660 * 3 2 1 28 28 H 1.08000 * 120.02338 * 180.29970 * 4 3 2 29 29 H 1.08002 * 120.93459 * 359.95659 * 7 6 5 30 30 H 0.96994 * 120.00126 * 179.97438 * 12 11 9 31 31 H 1.08003 * 119.64636 * 179.97438 * 17 8 7 32 32 H 0.96997 * 120.00507 * 359.97438 * 22 21 5 33 33 H 0.97001 * 119.99914 * 180.02562 * 22 21 5 34 34 H 1.08004 * 119.97542 * 359.97301 * 23 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1956 1.2007 0.0000 4 6 3.5758 1.2112 0.0054 5 6 4.2804 0.0099 -0.0013 6 6 5.7633 0.0159 -0.0023 7 6 6.4661 0.5245 1.0842 8 6 7.8745 0.5059 1.0323 9 6 8.6404 1.0105 2.1082 10 1 9.6522 1.3482 1.9390 11 6 8.0877 1.0723 3.3918 12 7 7.0231 0.3681 3.6804 13 14 8.8693 2.1600 4.6938 14 1 8.2623 3.5142 4.6370 15 1 8.6374 1.5696 6.0365 16 1 10.3294 2.2611 4.4430 17 6 8.5054 -0.0229 -0.1100 18 7 7.7955 -0.4925 -1.1125 19 6 6.4741 -0.4919 -1.0978 20 9 5.7976 -0.9928 -2.1545 21 6 3.5820 -1.2032 -0.0013 22 7 4.2780 -2.4120 -0.0017 23 6 2.1943 -1.1983 -0.0005 24 1 -0.3633 -0.0004 1.0276 25 1 -0.3634 0.8902 -0.5135 26 1 -0.3634 -0.8898 -0.5141 27 1 1.6507 2.1331 0.0008 28 1 4.1090 2.1504 0.0103 29 1 5.9474 0.9230 1.9437 30 1 6.6401 0.4106 4.5705 31 1 9.5839 -0.0431 -0.1635 32 1 5.2480 -2.4132 -0.0025 33 1 3.7920 -3.2515 -0.0021 34 1 1.6512 -2.1318 -0.0005 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001244394655.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:01:18 Heat of formation + Delta-G solvation = -23.646903 kcal Electronic energy + Delta-G solvation = -20155.567659 eV Core-core repulsion = 16965.805225 eV Total energy + Delta-G solvation = -3189.762434 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 272.102 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -49.37761 -40.74579 -39.65535 -36.04319 -35.76048 -34.20267 -32.28781 -31.34873 -29.65394 -27.43940 -27.26828 -24.15551 -23.34358 -23.06432 -21.55539 -19.34685 -18.47369 -17.98742 -17.64025 -17.46404 -16.93932 -16.40884 -16.27230 -15.21242 -15.15299 -14.69402 -14.64480 -14.42624 -14.18085 -13.96657 -13.69391 -13.63508 -13.31003 -13.09131 -12.90427 -12.85388 -12.46329 -12.28844 -12.01403 -11.70934 -11.32427 -11.24137 -10.33155 -10.29509 -9.65893 -9.29259 -8.79115 -8.30360 -6.50837 0.25615 0.66254 0.77481 0.88563 1.40686 1.49604 1.54842 2.16081 2.55795 2.95031 3.02842 3.30273 3.47700 3.88236 4.05339 4.15993 4.28317 4.55569 4.59166 4.65293 4.70924 4.90392 4.94541 4.97256 5.07617 5.12897 5.13587 5.31458 5.44416 5.59771 5.70208 5.75880 5.80488 5.94380 6.08066 6.37260 6.56907 6.62346 6.64691 6.96865 7.33818 8.14596 Molecular weight = 272.10amu Principal moments of inertia in cm(-1) A = 0.018186 B = 0.006310 C = 0.005164 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1539.311000 B = 4436.159441 C = 5420.494773 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.107 4.107 2 C -0.043 4.043 3 C -0.186 4.186 4 C -0.070 4.070 5 C -0.145 4.145 6 C -0.073 4.073 7 C -0.119 4.119 8 C 0.038 3.962 9 C -0.461 4.461 10 H 0.097 0.903 11 C 0.036 3.964 12 N -0.806 5.806 13 Si 0.989 3.011 14 H -0.262 1.262 15 H -0.269 1.269 16 H -0.252 1.252 17 C -0.009 4.009 18 N -0.501 5.501 19 C 0.132 3.868 20 F -0.145 7.145 21 C 0.225 3.775 22 N -0.866 5.866 23 C -0.208 4.208 24 H 0.081 0.919 25 H 0.078 0.922 26 H 0.076 0.924 27 H 0.141 0.859 28 H 0.113 0.887 29 H 0.126 0.874 30 H 0.295 0.705 31 H 0.154 0.846 32 H 0.391 0.609 33 H 0.407 0.593 34 H 0.142 0.858 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.762 0.214 0.494 9.777 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C -0.044 4.044 3 C -0.205 4.205 4 C -0.089 4.089 5 C -0.150 4.150 6 C -0.076 4.076 7 C -0.145 4.145 8 C 0.033 3.967 9 C -0.489 4.489 10 H 0.115 0.885 11 C -0.182 4.182 12 N -0.430 5.430 13 Si 0.809 3.191 14 H -0.186 1.186 15 H -0.193 1.193 16 H -0.175 1.175 17 C -0.171 4.171 18 N -0.213 5.213 19 C -0.021 4.021 20 F -0.125 7.125 21 C 0.119 3.881 22 N -0.404 5.404 23 C -0.230 4.230 24 H 0.099 0.901 25 H 0.097 0.903 26 H 0.095 0.905 27 H 0.159 0.841 28 H 0.131 0.869 29 H 0.143 0.857 30 H 0.106 0.894 31 H 0.171 0.829 32 H 0.218 0.782 33 H 0.237 0.763 34 H 0.160 0.840 Dipole moment (debyes) X Y Z Total from point charges -9.579 -0.225 -0.092 9.582 hybrid contribution 0.447 0.125 0.928 1.037 sum -9.132 -0.099 0.835 9.171 Atomic orbital electron populations 1.20825 0.88530 1.03794 1.03213 1.20060 0.97515 0.91823 0.95014 1.20911 0.92712 0.98727 1.08190 1.21059 0.95002 0.95956 0.96897 1.18308 0.90674 0.93514 1.12520 1.19147 0.93042 1.01702 0.93740 1.21688 0.93776 1.02225 0.96809 1.18815 0.92995 0.90766 0.94130 1.19927 1.01296 1.35452 0.92206 0.88489 1.26904 0.94719 0.94698 1.01854 1.69838 1.19218 1.30376 1.23595 0.85067 0.79914 0.78203 0.75888 1.18626 1.19329 1.17511 1.22532 0.98585 1.04595 0.91345 1.66238 1.06808 1.17317 1.30933 1.17797 0.86803 1.10750 0.86736 1.91388 1.78470 1.86541 1.56092 1.17958 0.91944 0.85776 0.92441 1.42426 1.08959 1.05109 1.83901 1.20604 0.90536 0.99490 1.12415 0.90077 0.90273 0.90481 0.84122 0.86901 0.85659 0.89385 0.82856 0.78204 0.76336 0.84024 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.96 10.00 71.23 0.71 -1.25 16 2 C -0.04 -1.20 5.88 -19.85 -0.12 -1.32 16 3 C -0.19 -5.67 9.68 22.26 0.22 -5.45 16 4 C -0.07 -2.67 9.73 22.47 0.22 -2.45 16 5 C -0.14 -6.15 5.04 -19.93 -0.10 -6.25 16 6 C -0.07 -3.50 4.53 -19.96 -0.09 -3.59 16 7 C -0.12 -6.09 8.51 23.13 0.20 -5.90 16 8 C 0.04 1.93 5.59 -21.22 -0.12 1.81 16 9 C -0.46 -22.41 9.08 23.44 0.21 -22.19 16 10 H 0.10 4.40 7.90 -2.91 -0.02 4.37 16 11 C 0.04 1.66 5.17 85.24 0.44 2.10 16 12 N -0.81 -38.73 10.92 21.82 0.24 -38.49 16 13 Si 0.99 34.32 29.59 68.60 2.03 36.35 16 14 H -0.26 -8.91 7.11 99.48 0.71 -8.21 16 15 H -0.27 -8.97 7.11 99.48 0.71 -8.26 16 16 H -0.25 -8.40 7.11 99.48 0.71 -7.69 16 17 C -0.01 -0.44 10.96 85.37 0.94 0.49 16 18 N -0.50 -25.58 10.33 -193.69 -2.00 -27.58 16 19 C 0.13 6.61 7.26 85.10 0.62 7.23 16 20 F -0.14 -7.02 16.52 44.97 0.74 -6.28 16 21 C 0.23 8.42 6.56 38.47 0.25 8.67 16 22 N -0.87 -30.05 8.82 -50.91 -0.45 -30.50 16 23 C -0.21 -6.31 9.53 22.37 0.21 -6.10 16 24 H 0.08 1.31 8.14 -2.39 -0.02 1.29 16 25 H 0.08 1.23 8.08 -2.39 -0.02 1.21 16 26 H 0.08 1.20 8.08 -2.39 -0.02 1.18 16 27 H 0.14 3.43 8.06 -2.91 -0.02 3.41 16 28 H 0.11 4.23 8.06 -2.91 -0.02 4.20 16 29 H 0.13 6.61 6.19 -2.91 -0.02 6.59 16 30 H 0.30 12.80 8.30 -92.71 -0.77 12.03 16 31 H 0.15 6.81 8.06 -2.91 -0.02 6.78 16 32 H 0.39 15.49 6.83 -92.71 -0.63 14.86 16 33 H 0.41 10.92 8.84 -92.71 -0.82 10.10 16 34 H 0.14 3.43 8.06 -2.91 -0.02 3.40 16 Total: -1.00 -59.26 299.63 3.86 -55.40 By element: Atomic # 1 Polarization: 45.59 SS G_CDS: -0.29 Total: 45.29 kcal Atomic # 6 Polarization: -37.78 SS G_CDS: 3.59 Total: -34.19 kcal Atomic # 7 Polarization: -94.36 SS G_CDS: -2.21 Total: -96.57 kcal Atomic # 9 Polarization: -7.02 SS G_CDS: 0.74 Total: -6.28 kcal Atomic # 14 Polarization: 34.32 SS G_CDS: 2.03 Total: 36.35 kcal Total: -59.26 3.86 -55.40 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001244394655.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.753 kcal (2) G-P(sol) polarization free energy of solvation -59.256 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.504 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.857 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.399 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.647 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds