Wall clock time and date at job start Mon Mar 30 2020 01:02:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.38898 * 119.23857 * 2 1 4 4 C 1.36870 * 119.82311 * 179.68574 * 3 2 1 5 5 C 1.41118 * 118.40265 * 0.55006 * 4 3 2 6 6 C 1.40831 * 120.72310 * 179.72341 * 5 4 3 7 7 H 1.07995 * 119.99827 * 150.85663 * 6 5 4 8 8 C 1.40040 * 119.99828 * 330.59326 * 6 5 4 9 9 N 1.30796 * 120.00072 * 348.76675 * 8 6 5 10 10 Si 1.86800 * 119.99833 * 168.77350 * 8 6 5 11 11 H 1.48501 * 109.47133 * 89.99285 * 10 8 6 12 12 H 1.48494 * 109.46871 * 209.99364 * 10 8 6 13 13 H 1.48496 * 109.46792 * 329.99477 * 10 8 6 14 14 C 1.41968 * 118.55562 * 359.45740 * 5 4 3 15 15 C 1.47556 * 120.00595 * 180.24751 * 14 5 4 16 16 C 1.39733 * 120.19622 * 309.45168 * 15 14 5 17 17 C 1.37980 * 119.89800 * 179.97438 * 16 15 14 18 18 F 1.35099 * 119.85138 * 179.97438 * 17 16 15 19 19 C 1.38784 * 120.29252 * 0.03171 * 17 16 15 20 20 C 1.38088 * 120.39191 * 359.97251 * 19 17 16 21 21 C 1.38809 * 120.09339 * 359.72059 * 20 19 17 22 22 N 1.39226 * 120.14264 * 180.28314 * 21 20 19 23 23 N 1.31714 * 119.24561 * 179.97438 * 2 1 3 24 24 H 1.08992 * 109.47308 * 270.02161 * 1 2 3 25 25 H 1.09004 * 109.46853 * 30.02822 * 1 2 3 26 26 H 1.09003 * 109.46843 * 150.02112 * 1 2 3 27 27 H 1.08005 * 120.08592 * 359.97438 * 3 2 1 28 28 H 1.08004 * 120.79802 * 180.29882 * 4 3 2 29 29 H 0.96998 * 119.99681 * 180.02562 * 9 8 6 30 30 H 1.08000 * 120.04578 * 359.97438 * 16 15 14 31 31 H 1.07997 * 119.80810 * 179.97438 * 19 17 16 32 32 H 1.08000 * 119.95315 * 180.02562 * 20 19 17 33 33 H 0.97007 * 119.99710 * 173.93193 * 22 21 20 34 34 H 0.97004 * 120.00305 * 353.93184 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1854 1.2120 0.0000 4 6 3.5541 1.2260 0.0065 5 6 4.2380 -0.0084 0.0012 6 6 5.6456 -0.0510 0.0016 7 1 6.1604 -0.8859 0.4535 8 6 6.3777 0.9866 -0.5888 9 7 5.7695 1.8778 -1.3280 10 14 8.2230 1.0977 -0.3206 11 1 8.9245 0.3324 -1.3825 12 1 8.6461 2.5201 -0.3740 13 1 8.5653 0.5289 1.0077 14 6 3.4761 -1.2063 0.0011 15 6 4.1584 -2.5147 0.0011 16 6 5.1638 -2.7830 -0.9314 17 6 5.7981 -4.0084 -0.9255 18 9 6.7697 -4.2670 -1.8278 19 6 5.4415 -4.9768 0.0025 20 6 4.4495 -4.7245 0.9294 21 6 3.8052 -3.4950 0.9421 22 7 2.8090 -3.2375 1.8800 23 7 2.1505 -1.1492 0.0005 24 1 -0.3633 0.0004 1.0276 25 1 -0.3633 0.8898 -0.5143 26 1 -0.3633 -0.8902 -0.5135 27 1 1.6344 2.1409 -0.0004 28 1 4.0975 2.1593 0.0115 29 1 6.2766 2.5962 -1.7373 30 1 5.4440 -2.0324 -1.6556 31 1 5.9428 -5.9334 -0.0002 32 1 4.1780 -5.4830 1.6486 33 1 2.4218 -2.3504 1.9450 34 1 2.5021 -3.9450 2.4684 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001244396180.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:02:04 Heat of formation + Delta-G solvation = -7.209685 kcal Electronic energy + Delta-G solvation = -20358.028761 eV Core-core repulsion = 17168.979098 eV Total energy + Delta-G solvation = -3189.049663 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 272.102 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -48.05629 -39.21282 -37.77426 -34.42426 -33.58562 -32.19933 -30.86648 -29.55552 -27.82181 -27.41292 -24.53966 -22.86398 -21.76748 -20.65393 -20.20660 -17.45746 -16.77886 -16.61176 -16.27581 -15.60380 -14.81547 -14.56635 -14.49322 -14.25286 -13.85110 -13.27719 -13.20098 -12.61252 -12.39739 -12.24236 -12.16118 -11.82123 -11.77624 -11.50895 -11.37977 -11.15601 -11.00294 -10.64525 -10.45994 -9.85791 -9.73429 -9.44657 -8.64001 -8.14721 -8.10620 -7.53604 -6.96649 -6.66019 -4.55346 1.76660 2.10943 2.54983 2.87857 2.99125 3.04161 3.10991 3.80852 4.35370 4.48139 4.53449 5.01926 5.28550 5.41453 5.59812 5.62973 5.94795 6.00378 6.04431 6.23919 6.31699 6.44560 6.49124 6.55451 6.69408 6.76047 6.87480 6.92499 6.98480 7.11968 7.19762 7.51037 7.60413 7.79712 7.85893 8.10570 8.32766 8.39399 8.56088 8.62294 9.48477 9.96818 Molecular weight = 272.10amu Principal moments of inertia in cm(-1) A = 0.011179 B = 0.010632 C = 0.006035 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2503.985895 B = 2632.962940 C = 4638.758935 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 C -0.011 4.011 3 C -0.143 4.143 4 C -0.125 4.125 5 C 0.085 3.915 6 C -0.437 4.437 7 H 0.087 0.913 8 C 0.074 3.926 9 N -0.789 5.789 10 Si 0.909 3.091 11 H -0.265 1.265 12 H -0.275 1.275 13 H -0.258 1.258 14 C 0.021 3.979 15 C -0.026 4.026 16 C -0.078 4.078 17 C 0.023 3.977 18 F -0.155 7.155 19 C -0.119 4.119 20 C -0.188 4.188 21 C 0.220 3.780 22 N -0.864 5.864 23 N -0.450 5.450 24 H 0.049 0.951 25 H 0.052 0.948 26 H 0.055 0.945 27 H 0.098 0.902 28 H 0.127 0.873 29 H 0.285 0.715 30 H 0.138 0.862 31 H 0.122 0.878 32 H 0.120 0.880 33 H 0.405 0.595 34 H 0.388 0.612 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.867 -4.909 3.694 6.421 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C -0.152 4.152 3 C -0.164 4.164 4 C -0.150 4.150 5 C 0.080 3.920 6 C -0.466 4.466 7 H 0.105 0.895 8 C -0.145 4.145 9 N -0.414 5.414 10 Si 0.733 3.267 11 H -0.190 1.190 12 H -0.200 1.200 13 H -0.182 1.182 14 C -0.117 4.117 15 C -0.031 4.031 16 C -0.098 4.098 17 C 0.002 3.998 18 F -0.134 7.134 19 C -0.139 4.139 20 C -0.211 4.211 21 C 0.113 3.887 22 N -0.403 5.403 23 N -0.159 5.159 24 H 0.068 0.932 25 H 0.071 0.929 26 H 0.074 0.926 27 H 0.116 0.884 28 H 0.144 0.856 29 H 0.096 0.904 30 H 0.156 0.844 31 H 0.140 0.860 32 H 0.138 0.862 33 H 0.236 0.764 34 H 0.215 0.785 Dipole moment (debyes) X Y Z Total from point charges -2.246 -5.441 3.489 6.843 hybrid contribution 1.265 1.093 0.037 1.672 sum -0.981 -4.348 3.526 5.683 Atomic orbital electron populations 1.20281 0.91553 1.00969 1.00337 1.20256 0.94787 0.88574 1.11585 1.21256 0.95433 0.97138 1.02561 1.21418 0.92562 0.98888 1.02169 1.18346 0.94114 0.90728 0.88787 1.19565 0.91028 1.05110 1.30871 0.89490 1.25991 1.01685 0.94049 0.92803 1.69745 1.38803 1.11302 1.21508 0.86252 0.81464 0.78444 0.80525 1.18952 1.19955 1.18167 1.19247 0.88207 0.90905 1.13321 1.17680 0.97653 0.92495 0.95307 1.21093 0.95093 0.94750 0.98892 1.17299 0.93254 0.95895 0.93396 1.91402 1.61179 1.94620 1.66238 1.20655 0.98889 0.98521 0.95850 1.20150 1.01099 0.96699 1.03189 1.17873 0.88960 0.92822 0.89031 1.42341 1.42713 1.15558 1.39672 1.66890 1.09432 1.29099 1.10470 0.93249 0.92914 0.92615 0.88384 0.85559 0.90416 0.84368 0.86030 0.86246 0.76413 0.78516 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -1.26 10.15 36.01 0.37 -0.89 16 2 C -0.01 -0.23 6.79 -82.40 -0.56 -0.79 16 3 C -0.14 -3.16 9.64 -39.83 -0.38 -3.55 16 4 C -0.12 -3.03 8.71 -38.99 -0.34 -3.37 16 5 C 0.08 2.13 5.54 -106.40 -0.59 1.54 16 6 C -0.44 -10.80 7.09 -37.93 -0.27 -11.07 16 7 H 0.09 2.14 6.77 -52.49 -0.36 1.79 16 8 C 0.07 1.74 5.26 -17.32 -0.09 1.65 16 9 N -0.79 -19.12 10.95 55.55 0.61 -18.51 16 10 Si 0.91 18.08 29.58 -169.99 -5.03 13.05 16 11 H -0.26 -5.29 7.11 56.52 0.40 -4.88 16 12 H -0.27 -5.30 7.11 56.52 0.40 -4.90 16 13 H -0.26 -5.13 7.11 56.52 0.40 -4.73 16 14 C 0.02 0.51 5.70 -82.27 -0.47 0.04 16 15 C -0.03 -0.57 5.06 -104.73 -0.53 -1.10 16 16 C -0.08 -1.67 8.03 -39.12 -0.31 -1.99 16 17 C 0.02 0.44 7.29 -39.47 -0.29 0.15 16 18 F -0.16 -3.01 17.26 2.25 0.04 -2.97 16 19 C -0.12 -2.00 10.01 -39.43 -0.39 -2.40 16 20 C -0.19 -3.08 9.88 -39.43 -0.39 -3.47 16 21 C 0.22 4.15 6.75 -83.48 -0.56 3.58 16 22 N -0.86 -14.29 8.87 32.60 0.29 -14.00 16 23 N -0.45 -10.28 8.74 -5.47 -0.05 -10.33 16 24 H 0.05 0.76 8.14 -51.93 -0.42 0.33 16 25 H 0.05 0.80 8.07 -51.93 -0.42 0.38 16 26 H 0.05 0.94 8.14 -51.93 -0.42 0.51 16 27 H 0.10 1.90 8.06 -52.48 -0.42 1.47 16 28 H 0.13 3.13 6.39 -52.48 -0.34 2.80 16 29 H 0.28 6.30 8.30 -40.82 -0.34 5.96 16 30 H 0.14 3.16 7.35 -52.49 -0.39 2.78 16 31 H 0.12 1.69 8.06 -52.49 -0.42 1.27 16 32 H 0.12 1.57 8.06 -52.49 -0.42 1.15 16 33 H 0.40 7.35 6.77 -40.82 -0.28 7.07 16 34 H 0.39 5.00 8.84 -40.82 -0.36 4.64 16 LS Contribution 295.56 15.07 4.45 4.45 Total: -1.00 -26.45 295.56 -7.88 -34.33 By element: Atomic # 1 Polarization: 19.02 SS G_CDS: -3.38 Total: 15.64 kcal Atomic # 6 Polarization: -16.85 SS G_CDS: -4.82 Total: -21.66 kcal Atomic # 7 Polarization: -43.69 SS G_CDS: 0.85 Total: -42.84 kcal Atomic # 9 Polarization: -3.01 SS G_CDS: 0.04 Total: -2.97 kcal Atomic # 14 Polarization: 18.08 SS G_CDS: -5.03 Total: 13.05 kcal Total LS contribution 4.45 Total: 4.45 kcal Total: -26.45 -7.88 -34.33 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001244396180.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.121 kcal (2) G-P(sol) polarization free energy of solvation -26.449 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.672 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.882 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.331 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.210 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds