Wall clock time and date at job start Mon Mar 30 2020 01:02:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.38898 * 119.23857 * 2 1 4 4 C 1.36870 * 119.82311 * 179.68574 * 3 2 1 5 5 C 1.41118 * 118.40265 * 0.55006 * 4 3 2 6 6 C 1.40831 * 120.72310 * 179.72341 * 5 4 3 7 7 H 1.07995 * 119.99827 * 150.85663 * 6 5 4 8 8 C 1.40040 * 119.99828 * 330.59326 * 6 5 4 9 9 N 1.30796 * 120.00072 * 348.76675 * 8 6 5 10 10 Si 1.86800 * 119.99833 * 168.77350 * 8 6 5 11 11 H 1.48501 * 109.47133 * 89.99285 * 10 8 6 12 12 H 1.48494 * 109.46871 * 209.99364 * 10 8 6 13 13 H 1.48496 * 109.46792 * 329.99477 * 10 8 6 14 14 C 1.41968 * 118.55562 * 359.45740 * 5 4 3 15 15 C 1.47556 * 120.00595 * 180.24751 * 14 5 4 16 16 C 1.39733 * 120.19622 * 309.45168 * 15 14 5 17 17 C 1.37980 * 119.89800 * 179.97438 * 16 15 14 18 18 F 1.35099 * 119.85138 * 179.97438 * 17 16 15 19 19 C 1.38784 * 120.29252 * 0.03171 * 17 16 15 20 20 C 1.38088 * 120.39191 * 359.97251 * 19 17 16 21 21 C 1.38809 * 120.09339 * 359.72059 * 20 19 17 22 22 N 1.39226 * 120.14264 * 180.28314 * 21 20 19 23 23 N 1.31714 * 119.24561 * 179.97438 * 2 1 3 24 24 H 1.08992 * 109.47308 * 270.02161 * 1 2 3 25 25 H 1.09004 * 109.46853 * 30.02822 * 1 2 3 26 26 H 1.09003 * 109.46843 * 150.02112 * 1 2 3 27 27 H 1.08005 * 120.08592 * 359.97438 * 3 2 1 28 28 H 1.08004 * 120.79802 * 180.29882 * 4 3 2 29 29 H 0.96998 * 119.99681 * 180.02562 * 9 8 6 30 30 H 1.08000 * 120.04578 * 359.97438 * 16 15 14 31 31 H 1.07997 * 119.80810 * 179.97438 * 19 17 16 32 32 H 1.08000 * 119.95315 * 180.02562 * 20 19 17 33 33 H 0.97007 * 119.99710 * 173.93193 * 22 21 20 34 34 H 0.97004 * 120.00305 * 353.93184 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1854 1.2120 0.0000 4 6 3.5541 1.2260 0.0065 5 6 4.2380 -0.0084 0.0012 6 6 5.6456 -0.0510 0.0016 7 1 6.1604 -0.8859 0.4535 8 6 6.3777 0.9866 -0.5888 9 7 5.7695 1.8778 -1.3280 10 14 8.2230 1.0977 -0.3206 11 1 8.9245 0.3324 -1.3825 12 1 8.6461 2.5201 -0.3740 13 1 8.5653 0.5289 1.0077 14 6 3.4761 -1.2063 0.0011 15 6 4.1584 -2.5147 0.0011 16 6 5.1638 -2.7830 -0.9314 17 6 5.7981 -4.0084 -0.9255 18 9 6.7697 -4.2670 -1.8278 19 6 5.4415 -4.9768 0.0025 20 6 4.4495 -4.7245 0.9294 21 6 3.8052 -3.4950 0.9421 22 7 2.8090 -3.2375 1.8800 23 7 2.1505 -1.1492 0.0005 24 1 -0.3633 0.0004 1.0276 25 1 -0.3633 0.8898 -0.5143 26 1 -0.3633 -0.8902 -0.5135 27 1 1.6344 2.1409 -0.0004 28 1 4.0975 2.1593 0.0115 29 1 6.2766 2.5962 -1.7373 30 1 5.4440 -2.0324 -1.6556 31 1 5.9428 -5.9334 -0.0002 32 1 4.1780 -5.4830 1.6486 33 1 2.4218 -2.3504 1.9450 34 1 2.5021 -3.9450 2.4684 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001244396180.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:02:03 Heat of formation + Delta-G solvation = -21.554291 kcal Electronic energy + Delta-G solvation = -20358.650789 eV Core-core repulsion = 17168.979098 eV Total energy + Delta-G solvation = -3189.671692 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 272.102 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -49.56784 -40.84555 -39.34701 -36.16983 -35.01390 -33.81369 -32.63092 -31.07900 -29.46154 -28.90547 -26.19065 -24.48970 -23.32702 -22.32753 -21.80902 -19.25956 -18.29826 -18.05318 -17.71626 -17.33804 -16.38567 -16.20811 -16.02053 -15.80438 -15.47770 -14.84626 -14.67493 -14.25026 -13.90937 -13.73113 -13.57347 -13.49413 -13.37417 -13.12131 -12.95884 -12.72853 -12.62839 -12.24647 -12.00019 -11.54870 -11.22345 -11.14127 -10.32457 -9.92204 -9.75158 -9.24722 -8.70853 -8.12951 -6.38686 0.22870 0.61465 0.85028 1.12078 1.34464 1.44305 1.48420 2.15097 2.68729 2.89513 3.16798 3.47653 3.70740 3.85362 4.11245 4.21544 4.38624 4.48432 4.60575 4.63582 4.93854 4.95138 5.00678 5.05454 5.13192 5.21136 5.21980 5.33497 5.41879 5.45184 5.59552 5.82337 5.97415 6.07174 6.08841 6.51347 6.67563 6.75133 6.81283 7.14387 7.71102 8.23336 Molecular weight = 272.10amu Principal moments of inertia in cm(-1) A = 0.011179 B = 0.010632 C = 0.006035 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2503.985895 B = 2632.962940 C = 4638.758935 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 C -0.013 4.013 3 C -0.149 4.149 4 C -0.146 4.146 5 C 0.053 3.947 6 C -0.459 4.459 7 H 0.077 0.923 8 C 0.038 3.962 9 N -0.821 5.821 10 Si 0.971 3.029 11 H -0.266 1.266 12 H -0.262 1.262 13 H -0.258 1.258 14 C 0.018 3.982 15 C -0.063 4.063 16 C -0.094 4.094 17 C 0.005 3.995 18 F -0.159 7.159 19 C -0.101 4.101 20 C -0.173 4.173 21 C 0.217 3.783 22 N -0.855 5.855 23 N -0.459 5.459 24 H 0.071 0.929 25 H 0.073 0.927 26 H 0.058 0.942 27 H 0.125 0.875 28 H 0.113 0.887 29 H 0.291 0.709 30 H 0.106 0.894 31 H 0.161 0.839 32 H 0.165 0.835 33 H 0.397 0.603 34 H 0.407 0.593 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.584 -6.727 4.969 8.753 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C -0.154 4.154 3 C -0.169 4.169 4 C -0.172 4.172 5 C 0.049 3.951 6 C -0.489 4.489 7 H 0.095 0.905 8 C -0.178 4.178 9 N -0.446 5.446 10 Si 0.792 3.208 11 H -0.191 1.191 12 H -0.186 1.186 13 H -0.182 1.182 14 C -0.120 4.120 15 C -0.069 4.069 16 C -0.114 4.114 17 C -0.016 4.016 18 F -0.138 7.138 19 C -0.120 4.120 20 C -0.196 4.196 21 C 0.109 3.891 22 N -0.393 5.393 23 N -0.168 5.168 24 H 0.090 0.910 25 H 0.092 0.908 26 H 0.077 0.923 27 H 0.143 0.857 28 H 0.131 0.869 29 H 0.101 0.899 30 H 0.124 0.876 31 H 0.179 0.821 32 H 0.182 0.818 33 H 0.227 0.773 34 H 0.238 0.762 Dipole moment (debyes) X Y Z Total from point charges -2.991 -7.276 4.784 9.208 hybrid contribution 1.332 1.566 -0.338 2.084 sum -1.659 -5.710 4.446 7.424 Atomic orbital electron populations 1.20345 0.87986 1.02150 1.02144 1.21090 0.97193 0.88041 1.09119 1.21566 0.94743 0.98761 1.01865 1.21443 0.93765 0.98313 1.03681 1.18679 0.94797 0.91678 0.89947 1.19572 0.91346 1.05648 1.32285 0.90537 1.26677 1.05454 0.93473 0.92175 1.69786 1.40337 1.12070 1.22457 0.85344 0.76544 0.78872 0.80052 1.19094 1.18590 1.18166 1.19611 0.88676 0.91638 1.12044 1.17738 0.98920 0.92874 0.97371 1.20899 0.96197 0.95281 0.99042 1.17462 0.93599 0.96010 0.94512 1.91384 1.61322 1.94557 1.66576 1.21075 0.98070 0.98992 0.93896 1.20612 0.99561 0.96282 1.03161 1.18049 0.89380 0.93041 0.88604 1.42294 1.41887 1.15847 1.39300 1.67042 1.09006 1.29622 1.11117 0.91002 0.90834 0.92339 0.85691 0.86911 0.89853 0.87584 0.82142 0.81770 0.77330 0.76210 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -2.17 10.15 71.24 0.72 -1.45 16 2 C -0.01 -0.55 6.79 42.73 0.29 -0.26 16 3 C -0.15 -6.60 9.64 22.11 0.21 -6.38 16 4 C -0.15 -7.39 8.71 22.66 0.20 -7.19 16 5 C 0.05 2.81 5.54 -21.01 -0.12 2.69 16 6 C -0.46 -23.98 7.09 23.34 0.17 -23.81 16 7 H 0.08 4.01 6.77 -2.91 -0.02 3.99 16 8 C 0.04 1.87 5.26 85.28 0.45 2.32 16 9 N -0.82 -41.61 10.95 21.84 0.24 -41.37 16 10 Si 0.97 38.27 29.58 68.60 2.03 40.30 16 11 H -0.27 -10.43 7.11 99.48 0.71 -9.73 16 12 H -0.26 -9.66 7.11 99.48 0.71 -8.95 16 13 H -0.26 -10.04 7.11 99.48 0.71 -9.33 16 14 C 0.02 0.89 5.70 42.40 0.24 1.13 16 15 C -0.06 -2.81 5.06 -19.93 -0.10 -2.91 16 16 C -0.09 -4.17 8.03 22.57 0.18 -3.99 16 17 C 0.01 0.20 7.29 22.34 0.16 0.36 16 18 F -0.16 -6.15 17.26 44.97 0.78 -5.38 16 19 C -0.10 -3.06 10.01 22.37 0.22 -2.84 16 20 C -0.17 -5.02 9.88 22.37 0.22 -4.80 16 21 C 0.22 7.84 6.75 38.63 0.26 8.10 16 22 N -0.85 -26.49 8.87 -50.78 -0.45 -26.94 16 23 N -0.46 -20.98 8.74 -171.23 -1.50 -22.48 16 24 H 0.07 1.97 8.14 -2.39 -0.02 1.95 16 25 H 0.07 2.02 8.07 -2.38 -0.02 2.00 16 26 H 0.06 1.82 8.14 -2.39 -0.02 1.80 16 27 H 0.13 4.70 8.06 -2.91 -0.02 4.68 16 28 H 0.11 5.90 6.39 -2.91 -0.02 5.88 16 29 H 0.29 13.37 8.30 -92.71 -0.77 12.60 16 30 H 0.11 5.27 7.35 -2.91 -0.02 5.25 16 31 H 0.16 3.65 8.06 -2.91 -0.02 3.62 16 32 H 0.16 3.32 8.06 -2.91 -0.02 3.30 16 33 H 0.40 13.96 6.77 -92.70 -0.63 13.33 16 34 H 0.41 9.17 8.84 -92.71 -0.82 8.35 16 Total: -1.00 -60.11 295.56 3.93 -56.19 By element: Atomic # 1 Polarization: 39.01 SS G_CDS: -0.28 Total: 38.73 kcal Atomic # 6 Polarization: -42.16 SS G_CDS: 3.11 Total: -39.05 kcal Atomic # 7 Polarization: -89.08 SS G_CDS: -1.71 Total: -90.79 kcal Atomic # 9 Polarization: -6.15 SS G_CDS: 0.78 Total: -5.38 kcal Atomic # 14 Polarization: 38.27 SS G_CDS: 2.03 Total: 40.30 kcal Total: -60.11 3.93 -56.19 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001244396180.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.631 kcal (2) G-P(sol) polarization free energy of solvation -60.111 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.480 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.925 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.186 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.554 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds