Wall clock time and date at job start Mon Mar 30 2020 01:02:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 N 1.31241 * 119.79539 * 2 1 4 4 C 1.33103 * 121.71178 * 179.97438 * 3 2 1 5 5 C 1.47731 * 119.46119 * 179.97438 * 4 3 2 6 6 C 1.39655 * 120.18254 * 186.11958 * 5 4 3 7 7 C 1.38010 * 119.90302 * 179.97438 * 6 5 4 8 8 F 1.35102 * 119.86154 * 180.02562 * 7 6 5 9 9 C 1.38771 * 120.27905 * 359.97356 * 7 6 5 10 10 C 1.38078 * 120.37551 * 0.02562 * 9 7 6 11 11 C 1.38798 * 120.09209 * 359.74349 * 10 9 7 12 12 N 1.39276 * 120.14365 * 180.25147 * 11 10 9 13 13 C 1.40022 * 121.07892 * 0.02562 * 4 3 2 14 14 C 1.36523 * 119.46506 * 0.02562 * 13 4 3 15 15 C 1.40961 * 119.79139 * 180.02562 * 2 1 3 16 16 C 1.41001 * 120.54580 * 0.26841 * 15 2 1 17 17 H 1.07994 * 120.00693 * 331.22879 * 16 15 2 18 18 C 1.39988 * 119.99842 * 151.22438 * 16 15 2 19 19 N 1.30821 * 119.99792 * 348.48729 * 18 16 15 20 20 Si 1.86800 * 120.00237 * 168.48952 * 18 16 15 21 21 H 1.48498 * 109.47190 * 89.99955 * 20 18 16 22 22 H 1.48500 * 109.47270 * 209.99856 * 20 18 16 23 23 H 1.48501 * 109.47016 * 330.00281 * 20 18 16 24 24 H 1.08995 * 109.47564 * 269.99717 * 1 2 3 25 25 H 1.09001 * 109.46753 * 29.99560 * 1 2 3 26 26 H 1.09000 * 109.47134 * 149.99636 * 1 2 3 27 27 H 1.08007 * 120.05380 * 359.95148 * 6 5 4 28 28 H 1.08000 * 119.80818 * 180.02562 * 9 7 6 29 29 H 1.08002 * 119.95208 * 179.97438 * 10 9 7 30 30 H 0.97002 * 120.00179 * 207.38654 * 12 11 10 31 31 H 0.96997 * 119.99887 * 27.38513 * 12 11 10 32 32 H 1.08000 * 120.27047 * 179.97438 * 13 4 3 33 33 H 1.08000 * 120.79472 * 179.97438 * 14 13 4 34 34 H 0.97006 * 119.99654 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.1592 1.1389 0.0000 4 6 3.4894 1.1834 0.0005 5 6 4.1726 2.4933 -0.0001 6 6 5.5616 2.5607 -0.1283 7 6 6.1939 3.7874 -0.1287 8 9 7.5376 3.8516 -0.2532 9 6 5.4551 4.9554 -0.0027 10 6 4.0812 4.9022 0.1247 11 6 3.4290 3.6770 0.1222 12 7 2.0428 3.6223 0.2454 13 6 4.2520 0.0090 0.0005 14 6 3.6207 -1.2015 -0.0005 15 6 2.2074 -1.2233 -0.0005 16 6 1.5096 -2.4485 -0.0068 17 1 0.5282 -2.5134 0.4392 18 6 2.0890 -3.5810 -0.5912 19 7 3.1655 -3.4603 -1.3245 20 14 1.3248 -5.2645 -0.3239 21 1 0.3270 -5.5303 -1.3910 22 1 2.3859 -6.3025 -0.3688 23 1 0.6542 -5.2990 1.0006 24 1 -0.3634 -0.0001 1.0276 25 1 -0.3633 0.8900 -0.5138 26 1 -0.3633 -0.8899 -0.5139 27 1 6.1404 1.6540 -0.2266 28 1 5.9576 5.9113 -0.0044 29 1 3.5130 5.8154 0.2227 30 1 1.6207 2.8395 0.6327 31 1 1.4994 4.3671 -0.0562 32 1 5.3307 0.0604 0.0005 33 1 4.1877 -2.1207 -0.0009 34 1 3.5672 -4.2451 -1.7292 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001244396226.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:02:05 Heat of formation + Delta-G solvation = -10.939096 kcal Electronic energy + Delta-G solvation = -19838.997141 eV Core-core repulsion = 16649.785759 eV Total energy + Delta-G solvation = -3189.211382 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 272.102 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -49.62763 -40.89112 -39.41888 -36.05602 -34.98760 -34.01946 -32.60315 -31.37351 -29.03672 -28.71493 -26.76737 -24.41244 -23.46783 -22.13350 -21.77489 -19.31150 -18.47340 -17.94312 -17.61594 -17.18410 -16.42321 -16.29189 -16.11646 -15.91711 -15.49436 -14.95944 -14.63418 -14.26166 -13.95112 -13.72322 -13.57457 -13.40354 -13.36705 -13.18841 -12.84899 -12.74437 -12.63165 -12.24138 -11.91185 -11.61520 -11.25763 -10.96410 -10.30388 -10.09777 -9.90238 -9.15936 -8.71044 -8.16273 -6.37965 0.00011 0.53117 0.93160 1.11565 1.39751 1.51648 1.55773 2.16396 2.60327 2.97842 3.30636 3.46882 3.69137 3.77446 3.95885 4.18998 4.32428 4.44797 4.57047 4.66190 4.88337 4.91904 5.01719 5.04688 5.09788 5.16219 5.25169 5.29999 5.38060 5.48862 5.55352 5.80822 5.93068 6.00888 6.08656 6.46520 6.71965 6.76622 6.94549 7.35927 7.63971 8.21588 Molecular weight = 272.10amu Principal moments of inertia in cm(-1) A = 0.028579 B = 0.004831 C = 0.004176 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 979.489062 B = 5794.327932 C = 6702.866875 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 C -0.005 4.005 3 N -0.450 5.450 4 C 0.014 3.986 5 C -0.071 4.071 6 C -0.127 4.127 7 C 0.023 3.977 8 F -0.155 7.155 9 C -0.111 4.111 10 C -0.163 4.163 11 C 0.210 3.790 12 N -0.861 5.861 13 C -0.144 4.144 14 C -0.152 4.152 15 C 0.041 3.959 16 C -0.459 4.459 17 H 0.096 0.904 18 C 0.031 3.969 19 N -0.821 5.821 20 Si 0.988 3.012 21 H -0.260 1.260 22 H -0.271 1.271 23 H -0.253 1.253 24 H 0.066 0.934 25 H 0.065 0.935 26 H 0.066 0.934 27 H 0.125 0.875 28 H 0.159 0.841 29 H 0.160 0.840 30 H 0.408 0.592 31 H 0.398 0.602 32 H 0.116 0.884 33 H 0.113 0.887 34 H 0.292 0.708 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.185 8.479 2.161 8.830 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C -0.149 4.149 3 N -0.160 5.160 4 C -0.120 4.120 5 C -0.076 4.076 6 C -0.148 4.148 7 C 0.002 3.998 8 F -0.134 7.134 9 C -0.131 4.131 10 C -0.186 4.186 11 C 0.102 3.898 12 N -0.408 5.408 13 C -0.164 4.164 14 C -0.177 4.177 15 C 0.036 3.964 16 C -0.488 4.488 17 H 0.114 0.886 18 C -0.185 4.185 19 N -0.446 5.446 20 Si 0.808 3.192 21 H -0.185 1.185 22 H -0.195 1.195 23 H -0.176 1.176 24 H 0.085 0.915 25 H 0.084 0.916 26 H 0.085 0.915 27 H 0.143 0.857 28 H 0.177 0.823 29 H 0.177 0.823 30 H 0.246 0.754 31 H 0.227 0.773 32 H 0.134 0.866 33 H 0.131 0.869 34 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges -1.430 9.080 2.020 9.411 hybrid contribution 0.638 -1.952 -0.208 2.065 sum -0.792 7.128 1.812 7.397 Atomic orbital electron populations 1.20277 0.88311 1.02023 1.01705 1.21644 0.97025 0.87824 1.08453 1.66411 1.08386 1.29315 1.11854 1.19118 0.89167 0.91534 1.12205 1.18190 0.91997 0.91168 1.06289 1.20952 0.93773 0.97207 1.02868 1.17383 0.76889 0.94593 1.10926 1.91410 1.30264 1.97297 1.94439 1.21115 0.93984 0.97354 1.00653 1.20815 0.93695 0.96658 1.07424 1.18051 0.85999 0.92261 0.93526 1.42938 1.02532 1.24915 1.70383 1.21507 0.99668 0.93311 1.01901 1.21353 0.95274 0.96705 1.04406 1.18752 0.92759 0.94495 0.90394 1.19876 1.03821 0.93258 1.31842 0.88614 1.26928 0.94534 1.05193 0.91868 1.69837 1.18579 1.33953 1.22194 0.85093 0.78713 0.75108 0.80269 1.18500 1.19542 1.17643 0.91491 0.91645 0.91505 0.85678 0.82334 0.82259 0.75365 0.77296 0.86648 0.86930 0.89760 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -2.46 9.59 71.24 0.68 -1.78 16 2 C -0.01 -0.25 6.86 43.31 0.30 0.04 16 3 N -0.45 -20.30 6.63 -171.04 -1.13 -21.43 16 4 C 0.01 0.66 6.72 41.89 0.28 0.94 16 5 C -0.07 -2.81 5.89 -19.92 -0.12 -2.93 16 6 C -0.13 -4.68 9.38 22.56 0.21 -4.47 16 7 C 0.02 0.75 7.29 22.34 0.16 0.91 16 8 F -0.16 -4.99 17.26 44.97 0.78 -4.21 16 9 C -0.11 -2.95 10.01 22.36 0.22 -2.73 16 10 C -0.16 -4.31 9.93 22.37 0.22 -4.09 16 11 C 0.21 7.04 6.76 38.60 0.26 7.30 16 12 N -0.86 -26.42 8.35 -50.81 -0.42 -26.85 16 13 C -0.14 -6.85 9.37 22.30 0.21 -6.64 16 14 C -0.15 -7.85 8.69 22.64 0.20 -7.65 16 15 C 0.04 2.07 5.56 -21.17 -0.12 1.95 16 16 C -0.46 -22.42 8.06 23.37 0.19 -22.23 16 17 H 0.10 4.33 6.98 -2.91 -0.02 4.31 16 18 C 0.03 1.44 5.26 85.27 0.45 1.88 16 19 N -0.82 -40.63 10.90 21.84 0.24 -40.39 16 20 Si 0.99 35.06 29.58 68.60 2.03 37.09 16 21 H -0.26 -8.92 7.11 99.48 0.71 -8.21 16 22 H -0.27 -9.36 7.11 99.48 0.71 -8.65 16 23 H -0.25 -8.67 7.11 99.48 0.71 -7.96 16 24 H 0.07 2.25 8.14 -2.39 -0.02 2.23 16 25 H 0.06 2.20 8.14 -2.39 -0.02 2.18 16 26 H 0.07 2.51 6.81 -2.39 -0.02 2.49 16 27 H 0.13 4.57 6.20 -2.91 -0.02 4.55 16 28 H 0.16 3.10 8.06 -2.91 -0.02 3.07 16 29 H 0.16 3.03 8.06 -2.91 -0.02 3.01 16 30 H 0.41 14.18 5.94 -92.71 -0.55 13.63 16 31 H 0.40 9.39 8.92 -92.71 -0.83 8.56 16 32 H 0.12 4.97 6.20 -2.91 -0.02 4.96 16 33 H 0.11 6.00 6.33 -2.91 -0.02 5.98 16 34 H 0.29 13.08 8.30 -92.70 -0.77 12.31 16 Total: -1.00 -57.26 291.45 4.43 -52.83 By element: Atomic # 1 Polarization: 42.65 SS G_CDS: -0.20 Total: 42.45 kcal Atomic # 6 Polarization: -42.63 SS G_CDS: 3.15 Total: -39.48 kcal Atomic # 7 Polarization: -87.35 SS G_CDS: -1.32 Total: -88.67 kcal Atomic # 9 Polarization: -4.99 SS G_CDS: 0.78 Total: -4.21 kcal Atomic # 14 Polarization: 35.06 SS G_CDS: 2.03 Total: 37.09 kcal Total: -57.26 4.43 -52.83 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001244396226.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.891 kcal (2) G-P(sol) polarization free energy of solvation -57.261 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.371 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.432 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -52.830 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.939 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds