Wall clock time and date at job start Mon Mar 30 2020 01:33:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46498 * 1 3 3 C 1.39683 * 120.00004 * 2 1 4 4 C 1.39032 * 119.98743 * 359.97438 * 3 2 1 5 5 C 1.38447 * 120.19098 * 179.97438 * 4 3 2 6 6 F 1.35103 * 119.91335 * 180.02562 * 5 4 3 7 7 C 1.38242 * 120.17580 * 0.02562 * 5 4 3 8 8 C 1.39598 * 119.97523 * 359.97438 * 7 5 4 9 9 C 1.47972 * 120.09376 * 180.02562 * 8 7 5 10 10 C 1.39888 * 119.45312 * 4.97285 * 9 8 7 11 11 C 1.36609 * 119.46874 * 180.02562 * 10 9 8 12 12 C 1.41305 * 118.41069 * 0.02562 * 11 10 9 13 13 C 1.41054 * 120.55255 * 180.02562 * 12 11 10 14 14 H 1.07995 * 120.00006 * 203.67479 * 13 12 11 15 15 C 1.40028 * 119.99916 * 23.67323 * 13 12 11 16 16 N 1.30789 * 119.99901 * 17.63067 * 15 13 12 17 17 Si 1.86802 * 119.99904 * 197.62699 * 15 13 12 18 18 H 1.48504 * 109.46730 * 94.69857 * 17 15 13 19 19 H 1.48499 * 109.47002 * 214.69829 * 17 15 13 20 20 H 1.48500 * 109.47253 * 334.69969 * 17 15 13 21 21 C 1.40944 * 118.89129 * 0.02562 * 12 11 10 22 22 N 1.31254 * 120.40605 * 359.97438 * 21 12 11 23 23 C 1.38621 * 119.98962 * 180.29495 * 3 2 1 24 24 H 1.08997 * 109.47802 * 300.00242 * 1 2 3 25 25 H 1.09000 * 109.47088 * 60.00735 * 1 2 3 26 26 H 1.09008 * 109.47260 * 180.02562 * 1 2 3 27 27 H 0.97000 * 119.99956 * 179.97438 * 2 1 3 28 28 H 1.07994 * 119.90635 * 0.02562 * 4 3 2 29 29 H 1.08005 * 120.01131 * 179.97438 * 7 5 4 30 30 H 1.07997 * 120.26719 * 0.04981 * 10 9 8 31 31 H 1.07996 * 120.79579 * 179.97438 * 11 10 9 32 32 H 0.96995 * 119.99968 * 179.97438 * 16 15 13 33 33 H 1.08003 * 119.79497 * 180.27953 * 21 12 11 34 34 H 1.08000 * 120.08589 * 359.97438 * 23 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1634 1.2097 0.0000 4 6 1.4680 2.4136 -0.0005 5 6 2.1559 3.6150 0.0000 6 9 1.4745 4.7816 0.0000 7 6 3.5383 3.6242 0.0005 8 6 4.2438 2.4196 0.0011 9 6 5.7235 2.4263 0.0022 10 6 6.4057 3.6429 0.1083 11 6 7.7718 3.6496 0.1089 12 6 8.4502 2.4147 0.0006 13 6 9.8600 2.3690 -0.0029 14 1 10.3719 1.5316 -0.4533 15 6 10.5956 3.4095 0.5777 16 7 10.0162 4.2342 1.4112 17 14 12.4046 3.6195 0.1617 18 1 12.5476 4.6015 -0.9431 19 1 13.1338 4.1109 1.3584 20 1 12.9703 2.3131 -0.2608 21 6 7.6946 1.2295 -0.1038 22 7 6.3828 1.2755 -0.0998 23 6 3.5496 1.2094 -0.0062 24 1 -0.3634 0.5138 0.8899 25 1 -0.3633 0.5137 -0.8900 26 1 -0.3634 -1.0277 0.0005 27 1 1.9500 -0.8401 0.0004 28 1 0.3880 2.4116 -0.0005 29 1 4.0723 4.5630 0.0005 30 1 5.8569 4.5695 0.1896 31 1 8.3202 4.5764 0.1893 32 1 10.5259 4.9547 1.8136 33 1 8.1980 0.2773 -0.1828 34 1 4.0908 0.2749 -0.0106 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001244826426.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:33:49 Heat of formation + Delta-G solvation = -0.100299 kcal Electronic energy + Delta-G solvation = -19270.948926 eV Core-core repulsion = 16082.207549 eV Total energy + Delta-G solvation = -3188.741377 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 272.102 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -48.48175 -39.16236 -38.06572 -35.28084 -34.19875 -31.22745 -30.85989 -29.60832 -28.79788 -26.02464 -25.30233 -22.80611 -22.14507 -21.05186 -20.20875 -17.67326 -17.55561 -16.32269 -15.72470 -15.52588 -15.19445 -15.11475 -14.87334 -14.32542 -14.18951 -14.12270 -13.72168 -12.85349 -12.74752 -12.39198 -12.23775 -11.93917 -11.76893 -11.73128 -11.40475 -11.29820 -11.13092 -10.81098 -10.63150 -9.97400 -9.86199 -9.50787 -8.58599 -8.39548 -8.14780 -7.43065 -7.19803 -7.04763 -4.62943 1.48880 1.87902 2.62756 2.89646 2.92936 2.95224 3.11863 3.56157 3.68817 4.14208 4.57749 4.73920 5.08311 5.22023 5.41365 5.46852 5.58227 5.62159 5.64433 5.93236 5.99077 6.02949 6.27477 6.50636 6.59673 6.64208 6.70746 6.78818 6.88172 7.08544 7.11618 7.28556 7.58387 7.63644 7.70320 7.81955 7.86795 8.25410 8.43972 8.54688 9.49328 9.80563 Molecular weight = 272.10amu Principal moments of inertia in cm(-1) A = 0.034121 B = 0.003881 C = 0.003527 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 820.407801 B = 7212.969090 C = 7936.495302 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.096 3.904 2 N -0.754 5.754 3 C 0.235 3.765 4 C -0.261 4.261 5 C 0.141 3.859 6 F -0.148 7.148 7 C -0.220 4.220 8 C 0.092 3.908 9 C -0.016 4.016 10 C -0.114 4.114 11 C -0.147 4.147 12 C 0.071 3.929 13 C -0.430 4.430 14 H 0.089 0.911 15 C 0.071 3.929 16 N -0.771 5.771 17 Si 0.917 3.083 18 H -0.265 1.265 19 H -0.274 1.274 20 H -0.258 1.258 21 C -0.017 4.017 22 N -0.442 5.442 23 C -0.195 4.195 24 H 0.049 0.951 25 H 0.049 0.951 26 H 0.069 0.931 27 H 0.402 0.598 28 H 0.122 0.878 29 H 0.129 0.871 30 H 0.103 0.897 31 H 0.127 0.873 32 H 0.288 0.712 33 H 0.130 0.870 34 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.565 -2.942 -1.503 10.119 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.049 4.049 2 N -0.385 5.385 3 C 0.133 3.867 4 C -0.284 4.284 5 C 0.121 3.879 6 F -0.127 7.127 7 C -0.242 4.242 8 C 0.090 3.910 9 C -0.149 4.149 10 C -0.135 4.135 11 C -0.172 4.172 12 C 0.066 3.934 13 C -0.458 4.458 14 H 0.107 0.893 15 C -0.150 4.150 16 N -0.394 5.394 17 Si 0.741 3.259 18 H -0.190 1.190 19 H -0.199 1.199 20 H -0.181 1.181 21 C -0.183 4.183 22 N -0.149 5.149 23 C -0.218 4.218 24 H 0.067 0.933 25 H 0.068 0.932 26 H 0.088 0.912 27 H 0.236 0.764 28 H 0.140 0.860 29 H 0.147 0.853 30 H 0.121 0.879 31 H 0.145 0.855 32 H 0.099 0.901 33 H 0.148 0.852 34 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges -10.254 -3.402 -1.394 10.894 hybrid contribution 1.331 0.936 0.061 1.628 sum -8.923 -2.466 -1.334 9.353 Atomic orbital electron populations 1.21465 0.80735 1.01836 1.00888 1.44347 1.05297 1.05365 1.83515 1.17369 0.90839 0.85438 0.93051 1.20239 0.99472 0.90262 1.18462 1.17147 0.89567 0.80401 1.00776 1.91436 1.80305 1.46946 1.94026 1.20903 0.91540 0.99284 1.12427 1.18128 0.91510 0.90990 0.90383 1.18654 0.90423 0.89485 1.16383 1.21334 0.95293 0.96941 0.99908 1.21334 0.92517 0.98783 1.04583 1.18643 0.94355 0.92048 0.88373 1.19747 0.91206 1.04843 1.30017 0.89329 1.26126 1.02069 0.94275 0.92556 1.69783 1.39278 1.12422 1.17948 0.86131 0.80483 0.80129 0.79189 1.18958 1.19915 1.18116 1.22447 0.88464 0.96925 1.10500 1.66886 1.10570 1.28780 1.08693 1.20709 0.90736 0.99219 1.11130 0.93253 0.93248 0.91215 0.76426 0.85967 0.85276 0.87879 0.85487 0.90059 0.85236 0.84966 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 0.88 9.94 59.85 0.59 1.48 16 2 N -0.75 -9.29 5.89 -65.44 -0.39 -9.68 16 3 C 0.24 3.75 6.64 -83.84 -0.56 3.20 16 4 C -0.26 -4.15 9.29 -39.21 -0.36 -4.52 16 5 C 0.14 2.45 7.29 -39.50 -0.29 2.17 16 6 F -0.15 -2.50 17.26 2.25 0.04 -2.46 16 7 C -0.22 -4.15 9.39 -39.07 -0.37 -4.52 16 8 C 0.09 1.88 5.87 -104.93 -0.62 1.27 16 9 C -0.02 -0.38 6.73 -82.74 -0.56 -0.94 16 10 C -0.11 -2.66 9.37 -39.55 -0.37 -3.03 16 11 C -0.15 -3.66 8.74 -39.00 -0.34 -4.00 16 12 C 0.07 1.78 5.59 -106.64 -0.60 1.18 16 13 C -0.43 -10.41 9.07 -37.84 -0.34 -10.75 16 14 H 0.09 2.02 7.91 -52.49 -0.41 1.60 16 15 C 0.07 1.63 5.17 -17.32 -0.09 1.54 16 16 N -0.77 -18.32 10.92 55.55 0.61 -17.71 16 17 Si 0.92 16.93 29.60 -169.99 -5.03 11.90 16 18 H -0.26 -4.86 7.11 56.52 0.40 -4.46 16 19 H -0.27 -4.98 7.11 56.52 0.40 -4.58 16 20 H -0.26 -4.69 7.11 56.52 0.40 -4.29 16 21 C -0.02 -0.42 10.97 -16.77 -0.18 -0.60 16 22 N -0.44 -10.61 9.39 -9.10 -0.09 -10.69 16 23 C -0.19 -3.60 9.41 -38.97 -0.37 -3.97 16 24 H 0.05 0.45 7.94 -51.93 -0.41 0.04 16 25 H 0.05 0.45 7.94 -51.93 -0.41 0.04 16 26 H 0.07 0.46 8.14 -51.92 -0.42 0.04 16 27 H 0.40 4.34 8.84 -40.82 -0.36 3.98 16 28 H 0.12 1.68 6.71 -52.49 -0.35 1.33 16 29 H 0.13 2.34 6.17 -52.48 -0.32 2.02 16 30 H 0.10 2.13 6.17 -52.49 -0.32 1.81 16 31 H 0.13 3.18 6.19 -52.49 -0.32 2.85 16 32 H 0.29 6.15 8.29 -40.82 -0.34 5.81 16 33 H 0.13 2.85 8.06 -52.48 -0.42 2.42 16 34 H 0.13 2.46 7.53 -52.49 -0.40 2.07 16 LS Contribution 297.76 15.07 4.49 4.49 Total: -1.00 -26.85 297.76 -8.12 -34.96 By element: Atomic # 1 Polarization: 13.98 SS G_CDS: -3.30 Total: 10.68 kcal Atomic # 6 Polarization: -17.05 SS G_CDS: -4.45 Total: -21.50 kcal Atomic # 7 Polarization: -38.22 SS G_CDS: 0.14 Total: -38.08 kcal Atomic # 9 Polarization: -2.50 SS G_CDS: 0.04 Total: -2.46 kcal Atomic # 14 Polarization: 16.93 SS G_CDS: -5.03 Total: 11.90 kcal Total LS contribution 4.49 Total: 4.49 kcal Total: -26.85 -8.12 -34.96 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001244826426.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.865 kcal (2) G-P(sol) polarization free energy of solvation -26.849 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 8.015 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.116 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.965 kcal (6) G-S(sol) free energy of system = (1) + (5) -0.100 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds