Wall clock time and date at job start Mon Mar 30 2020 01:33:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46498 * 1 3 3 C 1.39683 * 120.00004 * 2 1 4 4 C 1.39032 * 119.98743 * 359.97438 * 3 2 1 5 5 C 1.38447 * 120.19098 * 179.97438 * 4 3 2 6 6 F 1.35103 * 119.91335 * 180.02562 * 5 4 3 7 7 C 1.38242 * 120.17580 * 0.02562 * 5 4 3 8 8 C 1.39598 * 119.97523 * 359.97438 * 7 5 4 9 9 C 1.47972 * 120.09376 * 180.02562 * 8 7 5 10 10 C 1.39888 * 119.45312 * 4.97285 * 9 8 7 11 11 C 1.36609 * 119.46874 * 180.02562 * 10 9 8 12 12 C 1.41305 * 118.41069 * 0.02562 * 11 10 9 13 13 C 1.41054 * 120.55255 * 180.02562 * 12 11 10 14 14 H 1.07995 * 120.00006 * 203.67479 * 13 12 11 15 15 C 1.40028 * 119.99916 * 23.67323 * 13 12 11 16 16 N 1.30789 * 119.99901 * 17.63067 * 15 13 12 17 17 Si 1.86802 * 119.99904 * 197.62699 * 15 13 12 18 18 H 1.48504 * 109.46730 * 94.69857 * 17 15 13 19 19 H 1.48499 * 109.47002 * 214.69829 * 17 15 13 20 20 H 1.48500 * 109.47253 * 334.69969 * 17 15 13 21 21 C 1.40944 * 118.89129 * 0.02562 * 12 11 10 22 22 N 1.31254 * 120.40605 * 359.97438 * 21 12 11 23 23 C 1.38621 * 119.98962 * 180.29495 * 3 2 1 24 24 H 1.08997 * 109.47802 * 300.00242 * 1 2 3 25 25 H 1.09000 * 109.47088 * 60.00735 * 1 2 3 26 26 H 1.09008 * 109.47260 * 180.02562 * 1 2 3 27 27 H 0.97000 * 119.99956 * 179.97438 * 2 1 3 28 28 H 1.07994 * 119.90635 * 0.02562 * 4 3 2 29 29 H 1.08005 * 120.01131 * 179.97438 * 7 5 4 30 30 H 1.07997 * 120.26719 * 0.04981 * 10 9 8 31 31 H 1.07996 * 120.79579 * 179.97438 * 11 10 9 32 32 H 0.96995 * 119.99968 * 179.97438 * 16 15 13 33 33 H 1.08003 * 119.79497 * 180.27953 * 21 12 11 34 34 H 1.08000 * 120.08589 * 359.97438 * 23 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1634 1.2097 0.0000 4 6 1.4680 2.4136 -0.0005 5 6 2.1559 3.6150 0.0000 6 9 1.4745 4.7816 0.0000 7 6 3.5383 3.6242 0.0005 8 6 4.2438 2.4196 0.0011 9 6 5.7235 2.4263 0.0022 10 6 6.4057 3.6429 0.1083 11 6 7.7718 3.6496 0.1089 12 6 8.4502 2.4147 0.0006 13 6 9.8600 2.3690 -0.0029 14 1 10.3719 1.5316 -0.4533 15 6 10.5956 3.4095 0.5777 16 7 10.0162 4.2342 1.4112 17 14 12.4046 3.6195 0.1617 18 1 12.5476 4.6015 -0.9431 19 1 13.1338 4.1109 1.3584 20 1 12.9703 2.3131 -0.2608 21 6 7.6946 1.2295 -0.1038 22 7 6.3828 1.2755 -0.0998 23 6 3.5496 1.2094 -0.0062 24 1 -0.3634 0.5138 0.8899 25 1 -0.3633 0.5137 -0.8900 26 1 -0.3634 -1.0277 0.0005 27 1 1.9500 -0.8401 0.0004 28 1 0.3880 2.4116 -0.0005 29 1 4.0723 4.5630 0.0005 30 1 5.8569 4.5695 0.1896 31 1 8.3202 4.5764 0.1893 32 1 10.5259 4.9547 1.8136 33 1 8.1980 0.2773 -0.1828 34 1 4.0908 0.2749 -0.0106 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001244826426.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:33:48 Heat of formation + Delta-G solvation = -14.290517 kcal Electronic energy + Delta-G solvation = -19271.564260 eV Core-core repulsion = 16082.207549 eV Total energy + Delta-G solvation = -3189.356711 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 272.102 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -49.83811 -40.72020 -39.63114 -36.60379 -35.82858 -32.83612 -32.65297 -30.99184 -30.30001 -27.49926 -26.56562 -24.43653 -23.72875 -22.64196 -21.73839 -19.37916 -18.98723 -17.73262 -17.16490 -17.09891 -16.56824 -16.54078 -16.27293 -15.91372 -15.65303 -15.20807 -15.03474 -14.49437 -14.43638 -13.77628 -13.63186 -13.57198 -13.28591 -12.97804 -12.96523 -12.75049 -12.55436 -12.27949 -12.09285 -11.71024 -11.34650 -10.99563 -10.28040 -10.10146 -9.98540 -9.12169 -8.78056 -8.39256 -6.46750 -0.03449 0.47837 0.95881 1.12688 1.39519 1.54363 1.56215 2.14836 2.52274 2.55785 2.95679 3.34496 3.72945 3.75885 4.03397 4.24195 4.33637 4.43889 4.47742 4.60172 4.66738 4.71953 4.77487 4.96127 4.98017 5.03174 5.13498 5.22616 5.27005 5.33086 5.64227 5.72975 5.87590 5.93229 6.02278 6.40464 6.42455 6.63659 6.70915 6.82663 7.64191 8.12123 Molecular weight = 272.10amu Principal moments of inertia in cm(-1) A = 0.034121 B = 0.003881 C = 0.003527 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 820.407801 B = 7212.969090 C = 7936.495302 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.088 3.912 2 N -0.746 5.746 3 C 0.245 3.755 4 C -0.249 4.249 5 C 0.140 3.860 6 F -0.144 7.144 7 C -0.231 4.231 8 C 0.065 3.935 9 C -0.022 4.022 10 C -0.122 4.122 11 C -0.165 4.165 12 C 0.045 3.955 13 C -0.459 4.459 14 H 0.095 0.905 15 C 0.034 3.966 16 N -0.804 5.804 17 Si 0.993 3.007 18 H -0.261 1.261 19 H -0.266 1.266 20 H -0.252 1.252 21 C -0.035 4.035 22 N -0.450 5.450 23 C -0.202 4.202 24 H 0.054 0.946 25 H 0.055 0.945 26 H 0.099 0.901 27 H 0.409 0.591 28 H 0.151 0.849 29 H 0.128 0.872 30 H 0.123 0.877 31 H 0.119 0.881 32 H 0.297 0.703 33 H 0.144 0.856 34 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.080 -3.510 -1.680 11.743 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.056 4.056 2 N -0.375 5.375 3 C 0.140 3.860 4 C -0.273 4.273 5 C 0.120 3.880 6 F -0.123 7.123 7 C -0.253 4.253 8 C 0.063 3.937 9 C -0.156 4.156 10 C -0.142 4.142 11 C -0.190 4.190 12 C 0.040 3.960 13 C -0.487 4.487 14 H 0.113 0.887 15 C -0.185 4.185 16 N -0.427 5.427 17 Si 0.812 3.188 18 H -0.186 1.186 19 H -0.191 1.191 20 H -0.175 1.175 21 C -0.200 4.200 22 N -0.158 5.158 23 C -0.226 4.226 24 H 0.073 0.927 25 H 0.073 0.927 26 H 0.118 0.882 27 H 0.245 0.755 28 H 0.169 0.831 29 H 0.146 0.854 30 H 0.140 0.860 31 H 0.137 0.863 32 H 0.108 0.892 33 H 0.161 0.839 34 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges -11.804 -4.015 -1.569 12.567 hybrid contribution 1.507 1.052 0.133 1.843 sum -10.297 -2.963 -1.437 10.810 Atomic orbital electron populations 1.21748 0.78358 1.04168 1.01341 1.44545 1.06817 1.04403 1.81778 1.17358 0.90015 0.87007 0.91653 1.20520 1.00865 0.89405 1.16468 1.17178 0.89081 0.81127 1.00584 1.91447 1.80010 1.46856 1.93965 1.20891 0.92437 0.98726 1.13227 1.18092 0.90135 0.92504 0.92951 1.19164 0.92150 0.89203 1.15056 1.21569 0.94979 0.98064 0.99592 1.21371 0.93252 0.98543 1.05875 1.18941 0.95320 0.92460 0.89287 1.20026 0.91225 1.06212 1.31198 0.88708 1.27006 1.06504 0.93298 0.91674 1.69819 1.41303 1.13013 1.18581 0.85015 0.74592 0.80163 0.79013 1.18576 1.19085 1.17518 1.22708 0.88810 0.97377 1.11114 1.66937 1.10476 1.29214 1.09142 1.20703 0.92065 0.98233 1.11592 0.92720 0.92661 0.88200 0.75536 0.83091 0.85369 0.85970 0.86349 0.89177 0.83911 0.85630 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 1.24 9.94 127.77 1.27 2.51 16 2 N -0.75 -15.96 5.89 -360.95 -2.13 -18.08 16 3 C 0.24 7.23 6.64 38.17 0.25 7.48 16 4 C -0.25 -7.18 9.29 22.51 0.21 -6.97 16 5 C 0.14 4.63 7.29 22.32 0.16 4.79 16 6 F -0.14 -4.56 17.26 44.97 0.78 -3.78 16 7 C -0.23 -8.63 9.39 22.60 0.21 -8.42 16 8 C 0.07 2.68 5.87 -20.06 -0.12 2.56 16 9 C -0.02 -1.04 6.73 41.94 0.28 -0.75 16 10 C -0.12 -5.86 9.37 22.29 0.21 -5.65 16 11 C -0.17 -8.56 8.74 22.64 0.20 -8.36 16 12 C 0.04 2.34 5.59 -21.17 -0.12 2.22 16 13 C -0.46 -22.86 9.07 23.40 0.21 -22.65 16 14 H 0.09 4.42 7.91 -2.91 -0.02 4.40 16 15 C 0.03 1.56 5.17 85.28 0.44 2.00 16 16 N -0.80 -39.02 10.92 21.84 0.24 -38.78 16 17 Si 0.99 34.59 29.60 68.60 2.03 36.62 16 18 H -0.26 -8.89 7.11 99.48 0.71 -8.19 16 19 H -0.27 -8.87 7.11 99.48 0.71 -8.16 16 20 H -0.25 -8.47 7.11 99.48 0.71 -7.76 16 21 C -0.04 -1.76 10.97 85.44 0.94 -0.82 16 22 N -0.45 -22.22 9.39 -182.71 -1.72 -23.94 16 23 C -0.20 -7.35 9.41 22.67 0.21 -7.14 16 24 H 0.05 0.76 7.94 -2.39 -0.02 0.75 16 25 H 0.05 0.77 7.94 -2.39 -0.02 0.75 16 26 H 0.10 0.86 8.14 -2.38 -0.02 0.85 16 27 H 0.41 7.68 8.84 -92.71 -0.82 6.86 16 28 H 0.15 3.48 6.71 -2.91 -0.02 3.46 16 29 H 0.13 4.68 6.17 -2.91 -0.02 4.66 16 30 H 0.12 5.21 6.17 -2.91 -0.02 5.19 16 31 H 0.12 6.21 6.19 -2.91 -0.02 6.19 16 32 H 0.30 12.85 8.29 -92.71 -0.77 12.08 16 33 H 0.14 6.50 8.06 -2.91 -0.02 6.47 16 34 H 0.13 4.66 7.53 -2.91 -0.02 4.64 16 Total: -1.00 -58.88 297.76 3.90 -54.98 By element: Atomic # 1 Polarization: 31.85 SS G_CDS: 0.33 Total: 32.18 kcal Atomic # 6 Polarization: -43.57 SS G_CDS: 4.36 Total: -39.20 kcal Atomic # 7 Polarization: -77.20 SS G_CDS: -3.60 Total: -80.80 kcal Atomic # 9 Polarization: -4.56 SS G_CDS: 0.78 Total: -3.78 kcal Atomic # 14 Polarization: 34.59 SS G_CDS: 2.03 Total: 36.62 kcal Total: -58.88 3.90 -54.98 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001244826426.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.688 kcal (2) G-P(sol) polarization free energy of solvation -58.879 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.191 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.900 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -54.978 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.291 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds