Wall clock time and date at job start Mon Mar 30 2020 01:33:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46496 * 1 3 3 C 1.39681 * 120.00097 * 2 1 4 4 C 1.38963 * 120.00298 * 359.97438 * 3 2 1 5 5 C 1.38382 * 120.15233 * 179.72454 * 4 3 2 6 6 F 1.35103 * 119.92492 * 179.97438 * 5 4 3 7 7 C 1.38318 * 120.15234 * 359.97438 * 5 4 3 8 8 C 1.39336 * 119.99598 * 0.02562 * 7 5 4 9 9 C 1.48375 * 120.07493 * 180.02562 * 8 7 5 10 10 C 1.38890 * 119.61141 * 4.99796 * 9 8 7 11 11 C 1.40851 * 118.76674 * 180.02562 * 10 9 8 12 12 C 1.41530 * 120.99171 * 179.97438 * 11 10 9 13 13 H 1.07997 * 119.99823 * 330.87012 * 12 11 10 14 14 C 1.40039 * 120.00107 * 150.86942 * 12 11 10 15 15 N 1.30734 * 120.00234 * 161.62395 * 14 12 11 16 16 Si 1.86804 * 120.00019 * 341.61813 * 14 12 11 17 17 H 1.48504 * 109.46665 * 95.39458 * 16 14 12 18 18 H 1.48498 * 109.47376 * 215.39573 * 16 14 12 19 19 H 1.48500 * 109.47137 * 335.39690 * 16 14 12 20 20 C 1.41143 * 118.02209 * 0.02562 * 11 10 9 21 21 C 1.37742 * 119.07215 * 359.97438 * 20 11 10 22 22 N 1.31921 * 121.15379 * 359.73138 * 21 20 11 23 23 C 1.38705 * 120.00157 * 179.72378 * 3 2 1 24 24 H 1.09001 * 109.47364 * 60.00034 * 1 2 3 25 25 H 1.09000 * 109.47451 * 180.02562 * 1 2 3 26 26 H 1.09001 * 109.47444 * 300.00126 * 1 2 3 27 27 H 0.96999 * 119.99910 * 179.97438 * 2 1 3 28 28 H 1.08001 * 119.92615 * 359.69671 * 4 3 2 29 29 H 1.07998 * 120.00482 * 180.02562 * 7 5 4 30 30 H 1.07999 * 120.62182 * 0.02562 * 10 9 8 31 31 H 0.96999 * 120.00379 * 180.02562 * 15 14 12 32 32 H 1.07998 * 120.46505 * 179.97438 * 20 11 10 33 33 H 1.07997 * 119.42420 * 180.02562 * 21 20 11 34 34 H 1.07997 * 120.07016 * 0.24596 * 23 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1634 1.2097 0.0000 4 6 1.4687 2.4132 -0.0005 5 6 2.1574 3.6134 0.0052 6 9 1.4774 4.7807 0.0041 7 6 3.5406 3.6206 0.0121 8 6 4.2435 2.4176 0.0126 9 6 5.7272 2.4233 0.0205 10 6 6.4083 3.6286 0.1325 11 6 7.8167 3.6134 0.1376 12 6 8.5580 4.8138 0.2489 13 1 8.1470 5.7391 -0.1269 14 6 9.8245 4.8019 0.8464 15 7 10.6540 5.7911 0.6402 16 14 10.3287 3.3724 1.9383 17 1 11.0967 2.3851 1.1378 18 1 11.1752 3.8737 3.0506 19 1 9.1149 2.7221 2.4942 20 6 8.4668 2.3654 0.0273 21 6 7.7065 1.2218 -0.0794 22 7 6.3884 1.2757 -0.0748 23 6 3.5504 1.2097 0.0058 24 1 -0.3634 0.5138 -0.8900 25 1 -0.3634 -1.0276 0.0005 26 1 -0.3634 0.5138 0.8900 27 1 1.9499 -0.8400 0.0004 28 1 0.3887 2.4118 -0.0059 29 1 4.0757 4.5587 0.0170 30 1 5.8680 4.5602 0.2142 31 1 11.5314 5.7826 1.0538 32 1 9.5452 2.3080 0.0267 33 1 8.1980 0.2639 -0.1637 34 1 4.0916 0.2751 0.0063 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001244826909.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:33:51 Heat of formation + Delta-G solvation = 3.902842 kcal Electronic energy + Delta-G solvation = -19427.143193 eV Core-core repulsion = 16238.575405 eV Total energy + Delta-G solvation = -3188.567788 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 272.102 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -48.61978 -39.43082 -38.28547 -35.41703 -34.07857 -31.70264 -31.27372 -29.84726 -28.36747 -26.17526 -25.78500 -23.11353 -22.46634 -21.04910 -20.36664 -18.17116 -17.06716 -16.49639 -16.00943 -15.72029 -15.34479 -15.16602 -14.81435 -14.59712 -14.25856 -14.20289 -14.00956 -13.09482 -12.98287 -12.87553 -12.52721 -12.28663 -12.03055 -11.58857 -11.50752 -11.19670 -10.89352 -10.79548 -10.71768 -10.00283 -9.89181 -9.46312 -8.82865 -8.34719 -8.22153 -7.55339 -7.34275 -7.12736 -4.77636 1.21361 1.66486 2.47974 2.65266 3.02066 3.12406 3.22382 3.39346 3.84929 3.99634 4.51675 4.55641 4.88760 4.99219 5.24847 5.29946 5.34108 5.40877 5.52447 5.70988 5.72396 5.75917 6.08443 6.28483 6.34538 6.43543 6.48692 6.55030 6.78187 6.89120 6.97406 7.04660 7.20567 7.40187 7.57439 7.66616 7.83804 8.14791 8.36602 8.58289 9.23617 9.88329 Molecular weight = 272.10amu Principal moments of inertia in cm(-1) A = 0.027953 B = 0.004559 C = 0.004044 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1001.442737 B = 6140.831258 C = 6922.903001 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.094 3.906 2 N -0.753 5.753 3 C 0.229 3.771 4 C -0.240 4.240 5 C 0.137 3.863 6 F -0.144 7.144 7 C -0.196 4.196 8 C 0.054 3.946 9 C 0.155 3.845 10 C -0.229 4.229 11 C 0.107 3.893 12 C -0.437 4.437 13 H 0.096 0.904 14 C 0.087 3.913 15 N -0.795 5.795 16 Si 0.914 3.086 17 H -0.267 1.267 18 H -0.288 1.288 19 H -0.245 1.245 20 C -0.284 4.284 21 C 0.120 3.880 22 N -0.561 5.561 23 C -0.171 4.171 24 H 0.050 0.950 25 H 0.071 0.929 26 H 0.050 0.950 27 H 0.403 0.597 28 H 0.127 0.873 29 H 0.138 0.862 30 H 0.114 0.886 31 H 0.289 0.711 32 H 0.109 0.891 33 H 0.129 0.871 34 H 0.138 0.862 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.088 -8.451 0.302 15.582 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.051 4.051 2 N -0.383 5.383 3 C 0.126 3.874 4 C -0.264 4.264 5 C 0.117 3.883 6 F -0.122 7.122 7 C -0.218 4.218 8 C 0.053 3.947 9 C 0.024 3.976 10 C -0.251 4.251 11 C 0.099 3.901 12 C -0.467 4.467 13 H 0.114 0.886 14 C -0.135 4.135 15 N -0.418 5.418 16 Si 0.740 3.260 17 H -0.193 1.193 18 H -0.215 1.215 19 H -0.169 1.169 20 C -0.307 4.307 21 C -0.035 4.035 22 N -0.276 5.276 23 C -0.194 4.194 24 H 0.069 0.931 25 H 0.090 0.910 26 H 0.069 0.931 27 H 0.237 0.763 28 H 0.145 0.855 29 H 0.155 0.845 30 H 0.132 0.868 31 H 0.100 0.900 32 H 0.127 0.873 33 H 0.146 0.854 34 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges -13.592 -8.981 0.253 16.293 hybrid contribution 1.013 0.275 0.501 1.163 sum -12.579 -8.706 0.754 15.317 Atomic orbital electron populations 1.21499 0.80490 1.02076 1.01010 1.44352 1.05443 1.05261 1.83283 1.17384 0.90812 0.85654 0.93551 1.20371 0.99865 0.90255 1.15914 1.17141 0.89548 0.80583 1.01024 1.91464 1.80210 1.46615 1.93944 1.21029 0.91740 0.99602 1.09379 1.18221 0.91450 0.91462 0.93606 1.19101 0.90638 0.89832 0.98032 1.21962 0.94471 0.97058 1.11658 1.17868 0.91639 0.92800 0.87786 1.19532 0.98797 0.95456 1.32922 0.88648 1.26200 0.94827 0.97062 0.95377 1.69642 1.06777 1.31351 1.34026 0.86262 0.79901 0.80536 0.79338 1.19266 1.21481 1.16853 1.21969 0.99425 0.94296 1.14963 1.21889 0.89404 0.96891 0.95328 1.67311 1.09500 1.27991 1.22824 1.20783 0.90873 0.99322 1.08390 0.93104 0.91037 0.93110 0.76294 0.85498 0.84452 0.86770 0.90041 0.87345 0.85389 0.84463 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 0.74 9.94 59.84 0.59 1.34 16 2 N -0.75 -8.10 5.89 -65.44 -0.39 -8.49 16 3 C 0.23 3.25 6.65 -83.84 -0.56 2.69 16 4 C -0.24 -3.44 9.28 -39.26 -0.36 -3.81 16 5 C 0.14 2.19 7.29 -39.50 -0.29 1.91 16 6 F -0.14 -2.27 17.26 2.25 0.04 -2.23 16 7 C -0.20 -3.46 9.38 -39.14 -0.37 -3.82 16 8 C 0.05 1.03 5.87 -104.93 -0.62 0.42 16 9 C 0.15 3.40 6.72 -83.04 -0.56 2.84 16 10 C -0.23 -5.30 9.24 -38.35 -0.35 -5.65 16 11 C 0.11 2.66 5.13 -106.55 -0.55 2.11 16 12 C -0.44 -11.42 9.63 -37.65 -0.36 -11.78 16 13 H 0.10 2.59 8.06 -52.49 -0.42 2.17 16 14 C 0.09 2.19 5.42 -17.34 -0.09 2.09 16 15 N -0.79 -20.30 13.92 55.55 0.77 -19.53 16 16 Si 0.91 20.00 24.54 -169.99 -4.17 15.83 16 17 H -0.27 -5.60 6.71 56.52 0.38 -5.22 16 18 H -0.29 -6.06 7.11 56.52 0.40 -5.66 16 19 H -0.25 -5.59 6.85 56.52 0.39 -5.21 16 20 C -0.28 -6.65 7.29 -38.66 -0.28 -6.93 16 21 C 0.12 2.59 11.15 -17.69 -0.20 2.40 16 22 N -0.56 -12.40 9.40 -9.94 -0.09 -12.49 16 23 C -0.17 -2.84 9.41 -39.03 -0.37 -3.21 16 24 H 0.05 0.40 7.94 -51.93 -0.41 -0.01 16 25 H 0.07 0.39 8.14 -51.93 -0.42 -0.03 16 26 H 0.05 0.40 7.95 -51.93 -0.41 -0.01 16 27 H 0.40 3.72 8.84 -40.82 -0.36 3.36 16 28 H 0.13 1.54 6.71 -52.49 -0.35 1.19 16 29 H 0.14 2.38 6.20 -52.49 -0.33 2.06 16 30 H 0.11 2.46 6.21 -52.49 -0.33 2.14 16 31 H 0.29 6.64 8.29 -40.82 -0.34 6.30 16 32 H 0.11 2.47 4.76 -52.49 -0.25 2.22 16 33 H 0.13 2.34 8.06 -52.49 -0.42 1.91 16 34 H 0.14 2.27 7.54 -52.49 -0.40 1.87 16 LS Contribution 292.78 15.07 4.41 4.41 Total: -1.00 -27.77 292.78 -7.06 -34.83 By element: Atomic # 1 Polarization: 10.35 SS G_CDS: -3.27 Total: 7.07 kcal Atomic # 6 Polarization: -15.05 SS G_CDS: -4.36 Total: -19.41 kcal Atomic # 7 Polarization: -40.80 SS G_CDS: 0.29 Total: -40.51 kcal Atomic # 9 Polarization: -2.27 SS G_CDS: 0.04 Total: -2.23 kcal Atomic # 14 Polarization: 20.00 SS G_CDS: -4.17 Total: 15.83 kcal Total LS contribution 4.41 Total: 4.41 kcal Total: -27.77 -7.06 -34.83 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001244826909.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.731 kcal (2) G-P(sol) polarization free energy of solvation -27.768 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.963 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.060 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.828 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.903 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds