Wall clock time and date at job start Mon Mar 30 2020 01:33:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46496 * 1 3 3 C 1.39681 * 120.00097 * 2 1 4 4 C 1.38963 * 120.00298 * 359.97438 * 3 2 1 5 5 C 1.38382 * 120.15233 * 179.72454 * 4 3 2 6 6 F 1.35103 * 119.92492 * 179.97438 * 5 4 3 7 7 C 1.38318 * 120.15234 * 359.97438 * 5 4 3 8 8 C 1.39336 * 119.99598 * 0.02562 * 7 5 4 9 9 C 1.48375 * 120.07493 * 180.02562 * 8 7 5 10 10 C 1.38890 * 119.61141 * 4.99796 * 9 8 7 11 11 C 1.40851 * 118.76674 * 180.02562 * 10 9 8 12 12 C 1.41530 * 120.99171 * 179.97438 * 11 10 9 13 13 H 1.07997 * 119.99823 * 330.87012 * 12 11 10 14 14 C 1.40039 * 120.00107 * 150.86942 * 12 11 10 15 15 N 1.30734 * 120.00234 * 161.62395 * 14 12 11 16 16 Si 1.86804 * 120.00019 * 341.61813 * 14 12 11 17 17 H 1.48504 * 109.46665 * 95.39458 * 16 14 12 18 18 H 1.48498 * 109.47376 * 215.39573 * 16 14 12 19 19 H 1.48500 * 109.47137 * 335.39690 * 16 14 12 20 20 C 1.41143 * 118.02209 * 0.02562 * 11 10 9 21 21 C 1.37742 * 119.07215 * 359.97438 * 20 11 10 22 22 N 1.31921 * 121.15379 * 359.73138 * 21 20 11 23 23 C 1.38705 * 120.00157 * 179.72378 * 3 2 1 24 24 H 1.09001 * 109.47364 * 60.00034 * 1 2 3 25 25 H 1.09000 * 109.47451 * 180.02562 * 1 2 3 26 26 H 1.09001 * 109.47444 * 300.00126 * 1 2 3 27 27 H 0.96999 * 119.99910 * 179.97438 * 2 1 3 28 28 H 1.08001 * 119.92615 * 359.69671 * 4 3 2 29 29 H 1.07998 * 120.00482 * 180.02562 * 7 5 4 30 30 H 1.07999 * 120.62182 * 0.02562 * 10 9 8 31 31 H 0.96999 * 120.00379 * 180.02562 * 15 14 12 32 32 H 1.07998 * 120.46505 * 179.97438 * 20 11 10 33 33 H 1.07997 * 119.42420 * 180.02562 * 21 20 11 34 34 H 1.07997 * 120.07016 * 0.24596 * 23 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1634 1.2097 0.0000 4 6 1.4687 2.4132 -0.0005 5 6 2.1574 3.6134 0.0052 6 9 1.4774 4.7807 0.0041 7 6 3.5406 3.6206 0.0121 8 6 4.2435 2.4176 0.0126 9 6 5.7272 2.4233 0.0205 10 6 6.4083 3.6286 0.1325 11 6 7.8167 3.6134 0.1376 12 6 8.5580 4.8138 0.2489 13 1 8.1470 5.7391 -0.1269 14 6 9.8245 4.8019 0.8464 15 7 10.6540 5.7911 0.6402 16 14 10.3287 3.3724 1.9383 17 1 11.0967 2.3851 1.1378 18 1 11.1752 3.8737 3.0506 19 1 9.1149 2.7221 2.4942 20 6 8.4668 2.3654 0.0273 21 6 7.7065 1.2218 -0.0794 22 7 6.3884 1.2757 -0.0748 23 6 3.5504 1.2097 0.0058 24 1 -0.3634 0.5138 -0.8900 25 1 -0.3634 -1.0276 0.0005 26 1 -0.3634 0.5138 0.8900 27 1 1.9499 -0.8400 0.0004 28 1 0.3887 2.4118 -0.0059 29 1 4.0757 4.5587 0.0170 30 1 5.8680 4.5602 0.2142 31 1 11.5314 5.7826 1.0538 32 1 9.5452 2.3080 0.0267 33 1 8.1980 0.2639 -0.1637 34 1 4.0916 0.2751 0.0063 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001244826909.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:33:50 Heat of formation + Delta-G solvation = -12.649500 kcal Electronic energy + Delta-G solvation = -19427.860956 eV Core-core repulsion = 16238.575405 eV Total energy + Delta-G solvation = -3189.285551 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 272.102 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -49.88200 -40.90437 -39.76717 -36.56871 -35.87814 -33.43153 -32.85135 -31.02934 -29.83261 -27.90826 -26.84207 -24.60945 -23.91953 -22.55671 -21.90359 -19.70397 -18.57573 -17.87079 -17.44898 -17.21035 -16.59778 -16.43048 -16.28350 -16.10649 -15.88665 -15.31937 -15.07193 -14.83462 -14.62109 -14.47136 -13.82968 -13.53269 -13.15764 -13.09627 -12.85940 -12.72291 -12.59688 -12.43532 -12.21652 -11.73279 -11.30192 -11.14752 -10.24688 -10.17987 -10.01825 -9.11332 -9.01408 -8.43170 -6.74536 -0.23361 0.38797 0.69148 1.02122 1.25155 1.39434 1.46986 2.07263 2.47290 2.50438 2.83070 3.20554 3.51363 3.55115 3.96394 4.14391 4.21462 4.37625 4.42408 4.46238 4.53325 4.62481 4.71335 4.72294 4.90278 4.97988 5.06049 5.11320 5.22018 5.26731 5.30304 5.60151 5.69540 5.78682 6.02453 6.20176 6.33454 6.48588 6.63969 6.80745 7.45667 8.05606 Molecular weight = 272.10amu Principal moments of inertia in cm(-1) A = 0.027953 B = 0.004559 C = 0.004044 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1001.442737 B = 6140.831258 C = 6922.903001 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.086 3.914 2 N -0.743 5.743 3 C 0.240 3.760 4 C -0.228 4.228 5 C 0.134 3.866 6 F -0.143 7.143 7 C -0.212 4.212 8 C 0.027 3.973 9 C 0.159 3.841 10 C -0.252 4.252 11 C 0.095 3.905 12 C -0.475 4.475 13 H 0.063 0.937 14 C 0.054 3.946 15 N -0.831 5.831 16 Si 0.967 3.033 17 H -0.246 1.246 18 H -0.273 1.273 19 H -0.261 1.261 20 C -0.297 4.297 21 C 0.121 3.879 22 N -0.558 5.558 23 C -0.172 4.172 24 H 0.055 0.945 25 H 0.100 0.900 26 H 0.055 0.945 27 H 0.412 0.588 28 H 0.156 0.844 29 H 0.127 0.873 30 H 0.115 0.885 31 H 0.300 0.700 32 H 0.115 0.885 33 H 0.170 0.830 34 H 0.139 0.861 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.026 -11.531 0.671 18.952 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.058 4.058 2 N -0.372 5.372 3 C 0.134 3.866 4 C -0.252 4.252 5 C 0.115 3.885 6 F -0.122 7.122 7 C -0.234 4.234 8 C 0.025 3.975 9 C 0.028 3.972 10 C -0.274 4.274 11 C 0.087 3.913 12 C -0.505 4.505 13 H 0.081 0.919 14 C -0.164 4.164 15 N -0.456 5.456 16 Si 0.789 3.211 17 H -0.171 1.171 18 H -0.199 1.199 19 H -0.185 1.185 20 C -0.319 4.319 21 C -0.034 4.034 22 N -0.272 5.272 23 C -0.195 4.195 24 H 0.074 0.926 25 H 0.119 0.881 26 H 0.074 0.926 27 H 0.247 0.753 28 H 0.173 0.827 29 H 0.144 0.856 30 H 0.133 0.867 31 H 0.110 0.890 32 H 0.133 0.867 33 H 0.187 0.813 34 H 0.156 0.844 Dipole moment (debyes) X Y Z Total from point charges -15.543 -12.082 0.610 19.696 hybrid contribution 1.325 1.121 0.324 1.766 sum -14.218 -10.961 0.934 17.977 Atomic orbital electron populations 1.21774 0.78305 1.04308 1.01427 1.44536 1.06839 1.04342 1.81476 1.17365 0.90076 0.87070 0.92066 1.20630 1.01220 0.89342 1.14035 1.17183 0.88977 0.81312 1.01070 1.91465 1.79980 1.46798 1.93949 1.20966 0.92719 0.98950 1.10727 1.18126 0.89875 0.92919 0.96549 1.19537 0.92455 0.89196 0.96035 1.22113 0.94254 0.98103 1.12978 1.18050 0.92396 0.93128 0.87736 1.19509 1.00303 0.95015 1.35664 0.91893 1.26856 0.94317 0.99305 0.95874 1.69654 1.07619 1.32937 1.35363 0.85465 0.79233 0.78142 0.78222 1.17110 1.19883 1.18466 1.22125 1.00013 0.94234 1.15498 1.22516 0.89276 0.98020 0.93575 1.67463 1.09771 1.27780 1.22196 1.20785 0.92052 0.98306 1.08377 0.92592 0.88132 0.92619 0.75252 0.82663 0.85554 0.86674 0.88951 0.86717 0.81318 0.84352 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 0.96 9.94 127.77 1.27 2.23 16 2 N -0.74 -13.00 5.89 -360.94 -2.13 -15.13 16 3 C 0.24 6.10 6.65 38.18 0.25 6.35 16 4 C -0.23 -5.86 9.28 22.48 0.21 -5.65 16 5 C 0.13 4.14 7.29 22.32 0.16 4.31 16 6 F -0.14 -4.37 17.26 44.97 0.78 -3.59 16 7 C -0.21 -7.54 9.38 22.55 0.21 -7.33 16 8 C 0.03 1.02 5.87 -20.07 -0.12 0.90 16 9 C 0.16 7.03 6.72 41.86 0.28 7.31 16 10 C -0.25 -12.15 9.24 23.07 0.21 -11.93 16 11 C 0.09 4.86 5.13 -21.12 -0.11 4.76 16 12 C -0.47 -26.24 9.63 23.52 0.23 -26.01 16 13 H 0.06 3.74 8.06 -2.91 -0.02 3.71 16 14 C 0.05 2.82 5.42 85.29 0.46 3.29 16 15 N -0.83 -43.85 13.92 21.84 0.30 -43.55 16 16 Si 0.97 41.13 24.54 68.60 1.68 42.81 16 17 H -0.25 -9.61 6.71 99.48 0.67 -8.94 16 18 H -0.27 -10.82 7.11 99.48 0.71 -10.11 16 19 H -0.26 -11.64 6.85 99.48 0.68 -10.96 16 20 C -0.30 -13.78 7.29 22.87 0.17 -13.61 16 21 C 0.12 5.03 11.15 84.56 0.94 5.97 16 22 N -0.56 -23.94 9.40 -185.37 -1.74 -25.68 16 23 C -0.17 -5.41 9.41 22.63 0.21 -5.20 16 24 H 0.06 0.62 7.94 -2.39 -0.02 0.60 16 25 H 0.10 0.60 8.14 -2.39 -0.02 0.58 16 26 H 0.06 0.62 7.95 -2.39 -0.02 0.60 16 27 H 0.41 5.97 8.84 -92.71 -0.82 5.15 16 28 H 0.16 3.09 6.71 -2.91 -0.02 3.07 16 29 H 0.13 4.64 6.20 -2.91 -0.02 4.62 16 30 H 0.12 5.35 6.21 -2.91 -0.02 5.33 16 31 H 0.30 14.03 8.29 -92.71 -0.77 13.26 16 32 H 0.12 5.11 4.76 -2.91 -0.01 5.10 16 33 H 0.17 5.55 8.06 -2.91 -0.02 5.52 16 34 H 0.14 4.27 7.54 -2.91 -0.02 4.25 16 Total: -1.00 -61.53 292.78 3.55 -57.98 By element: Atomic # 1 Polarization: 21.50 SS G_CDS: 0.27 Total: 21.78 kcal Atomic # 6 Polarization: -39.01 SS G_CDS: 4.39 Total: -34.62 kcal Atomic # 7 Polarization: -80.79 SS G_CDS: -3.56 Total: -84.36 kcal Atomic # 9 Polarization: -4.37 SS G_CDS: 0.78 Total: -3.59 kcal Atomic # 14 Polarization: 41.13 SS G_CDS: 1.68 Total: 42.81 kcal Total: -61.53 3.55 -57.98 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001244826909.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.332 kcal (2) G-P(sol) polarization free energy of solvation -61.535 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.203 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.553 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.981 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.650 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds