Wall clock time and date at job start Mon Mar 30 2020 01:33:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46497 * 1 3 3 C 1.39693 * 120.00360 * 2 1 4 4 C 1.39034 * 119.98226 * 359.97438 * 3 2 1 5 5 C 1.38464 * 120.20989 * 180.02562 * 4 3 2 6 6 F 1.35093 * 119.91393 * 179.97438 * 5 4 3 7 7 C 1.38236 * 120.17050 * 359.70196 * 5 4 3 8 8 C 1.39656 * 119.97102 * 0.57225 * 7 5 4 9 9 C 1.47826 * 120.10050 * 179.72196 * 8 7 5 10 10 N 1.32577 * 119.98813 * 136.04202 * 9 8 7 11 11 C 1.31743 * 121.71851 * 179.70453 * 10 9 8 12 12 C 1.38867 * 121.51111 * 0.58793 * 11 10 9 13 13 C 1.36894 * 119.79121 * 359.44903 * 12 11 10 14 14 C 1.41120 * 118.39262 * 0.24842 * 13 12 11 15 15 C 1.40892 * 120.71310 * 180.02562 * 14 13 12 16 16 H 1.08003 * 119.99304 * 152.85946 * 15 14 13 17 17 C 1.40065 * 120.00354 * 332.86011 * 15 14 13 18 18 N 1.30770 * 120.00193 * 345.59084 * 17 15 14 19 19 Si 1.86804 * 119.99878 * 165.59212 * 17 15 14 20 20 H 1.48497 * 109.47076 * 60.00327 * 19 17 15 21 21 H 1.48504 * 109.46901 * 180.02562 * 19 17 15 22 22 H 1.48495 * 109.46956 * 299.99830 * 19 17 15 23 23 C 1.38596 * 119.98428 * 180.02562 * 3 2 1 24 24 H 1.08999 * 109.47103 * 300.00377 * 1 2 3 25 25 H 1.09001 * 109.47383 * 59.99817 * 1 2 3 26 26 H 1.08997 * 109.47342 * 180.02562 * 1 2 3 27 27 H 0.97004 * 119.99982 * 180.02562 * 2 1 3 28 28 H 1.08000 * 119.90198 * 0.02562 * 4 3 2 29 29 H 1.08004 * 120.00637 * 180.29983 * 7 5 4 30 30 H 1.08006 * 119.24636 * 180.28841 * 11 10 9 31 31 H 1.07996 * 120.10852 * 179.71713 * 12 11 10 32 32 H 1.07997 * 120.79759 * 180.27316 * 13 12 11 33 33 H 0.96992 * 120.00339 * 180.02562 * 18 17 15 34 34 H 1.08001 * 120.09644 * 359.97438 * 23 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1635 1.2097 0.0000 4 6 1.4681 2.4136 -0.0005 5 6 2.1557 3.6155 -0.0011 6 9 1.4739 4.7817 -0.0021 7 6 3.5380 3.6250 0.0051 8 6 4.2440 2.4200 -0.0001 9 6 5.7223 2.4269 0.0003 10 7 6.3885 1.5999 0.7938 11 6 7.7055 1.5732 0.8175 12 6 8.4630 2.4204 0.0195 13 6 7.8384 3.3000 -0.8233 14 6 6.4276 3.3188 -0.8480 15 6 5.7345 4.2040 -1.6972 16 1 4.7456 3.9506 -2.0500 17 6 6.3278 5.4124 -2.0838 18 7 7.3834 5.8545 -1.4510 19 14 5.6112 6.3926 -3.5034 20 1 4.2088 6.7660 -3.1890 21 1 6.4166 7.6227 -3.7120 22 1 5.6391 5.5681 -4.7381 23 6 3.5495 1.2093 -0.0005 24 1 -0.3633 0.5139 0.8899 25 1 -0.3634 0.5139 -0.8900 26 1 -0.3634 -1.0276 0.0005 27 1 1.9500 -0.8401 -0.0004 28 1 0.3881 2.4115 -0.0005 29 1 4.0716 4.5640 0.0096 30 1 8.2075 0.8799 1.4762 31 1 9.5415 2.3825 0.0604 32 1 8.4116 3.9631 -1.4542 33 1 7.7940 6.6915 -1.7185 34 1 4.0907 0.2747 -0.0005 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001244828256.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:33:54 Heat of formation + Delta-G solvation = 2.678460 kcal Electronic energy + Delta-G solvation = -20027.643657 eV Core-core repulsion = 16839.022777 eV Total energy + Delta-G solvation = -3188.620881 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 272.102 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -48.24989 -39.08952 -37.97659 -35.03033 -34.19800 -31.35293 -30.66240 -29.48731 -28.32962 -26.02442 -25.29288 -22.82189 -21.80573 -21.25421 -19.96922 -17.56882 -17.35664 -16.12507 -15.63500 -15.46087 -15.04838 -14.96198 -14.70567 -14.32808 -14.07105 -14.00103 -13.78078 -12.75448 -12.65357 -12.26601 -12.04993 -11.83798 -11.60961 -11.55502 -11.41200 -11.09903 -11.01014 -10.82463 -10.58491 -9.90888 -9.52524 -9.43145 -8.49964 -8.14822 -8.10713 -7.43319 -7.02788 -6.93966 -4.56787 1.72790 2.09994 2.62269 2.94502 2.98399 3.02427 3.15937 3.67149 3.79773 4.38072 4.52725 4.95068 5.16348 5.34126 5.50020 5.55914 5.65516 5.72409 5.82181 6.12624 6.15852 6.19783 6.25756 6.54844 6.64682 6.77935 6.80808 6.90914 6.97928 7.14713 7.31239 7.43316 7.65706 7.73686 7.78750 7.85701 7.97112 8.33050 8.54412 8.61453 9.52043 9.93794 Molecular weight = 272.10amu Principal moments of inertia in cm(-1) A = 0.015198 B = 0.007374 C = 0.005390 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1841.907632 B = 3796.232591 C = 5193.341813 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.097 3.903 2 N -0.757 5.757 3 C 0.226 3.774 4 C -0.251 4.251 5 C 0.128 3.872 6 F -0.149 7.149 7 C -0.179 4.179 8 C 0.096 3.904 9 C 0.004 3.996 10 N -0.448 5.448 11 C -0.034 4.034 12 C -0.147 4.147 13 C -0.129 4.129 14 C 0.088 3.912 15 C -0.436 4.436 16 H 0.091 0.909 17 C 0.075 3.925 18 N -0.784 5.784 19 Si 0.909 3.091 20 H -0.259 1.259 21 H -0.276 1.276 22 H -0.261 1.261 23 C -0.189 4.189 24 H 0.048 0.952 25 H 0.048 0.952 26 H 0.068 0.932 27 H 0.400 0.600 28 H 0.121 0.879 29 H 0.143 0.857 30 H 0.121 0.879 31 H 0.099 0.901 32 H 0.127 0.873 33 H 0.286 0.714 34 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.470 -5.114 -0.312 9.058 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.048 4.048 2 N -0.388 5.388 3 C 0.125 3.875 4 C -0.275 4.275 5 C 0.108 3.892 6 F -0.127 7.127 7 C -0.200 4.200 8 C 0.094 3.906 9 C -0.134 4.134 10 N -0.155 5.155 11 C -0.196 4.196 12 C -0.167 4.167 13 C -0.155 4.155 14 C 0.084 3.916 15 C -0.465 4.465 16 H 0.109 0.891 17 C -0.145 4.145 18 N -0.407 5.407 19 Si 0.733 3.267 20 H -0.183 1.183 21 H -0.201 1.201 22 H -0.185 1.185 23 C -0.212 4.212 24 H 0.067 0.933 25 H 0.067 0.933 26 H 0.086 0.914 27 H 0.234 0.766 28 H 0.139 0.861 29 H 0.161 0.839 30 H 0.139 0.861 31 H 0.117 0.883 32 H 0.144 0.856 33 H 0.098 0.902 34 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges -8.000 -5.369 0.237 9.638 hybrid contribution 0.417 1.017 -1.124 1.572 sum -7.584 -4.352 -0.888 8.789 Atomic orbital electron populations 1.21440 0.80852 1.01655 1.00858 1.44292 1.05180 1.05267 1.84058 1.17279 0.90700 0.85419 0.94147 1.20258 0.99365 0.90302 1.17566 1.17233 0.89779 0.80373 1.01807 1.91427 1.80221 1.46988 1.94089 1.21228 0.91092 1.00413 1.07274 1.17893 0.91176 0.90763 0.90782 1.19362 0.90712 1.02433 1.00865 1.66998 1.09587 1.19874 1.19033 1.21653 0.89343 1.03668 1.04906 1.21444 0.98953 0.97717 0.98619 1.21408 0.94645 0.99060 1.00375 1.18314 0.92280 0.90747 0.90294 1.19659 1.02946 1.00646 1.23219 0.89119 1.26020 0.94095 0.98013 0.96386 1.69739 1.17415 1.19231 1.34351 0.86306 0.80374 0.78721 0.81321 1.18310 1.20072 1.18517 1.20715 0.90928 0.98595 1.10978 0.93332 0.93312 0.91366 0.76643 0.86083 0.83914 0.86107 0.88264 0.85563 0.90241 0.86034 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 0.98 9.94 59.85 0.59 1.57 16 2 N -0.76 -9.96 5.89 -65.45 -0.39 -10.34 16 3 C 0.23 3.87 6.64 -83.85 -0.56 3.31 16 4 C -0.25 -4.39 9.29 -39.20 -0.36 -4.75 16 5 C 0.13 2.51 7.29 -39.50 -0.29 2.23 16 6 F -0.15 -2.87 17.26 2.25 0.04 -2.83 16 7 C -0.18 -3.90 7.79 -39.05 -0.30 -4.20 16 8 C 0.10 2.14 5.25 -104.94 -0.55 1.59 16 9 C 0.00 0.10 6.42 -82.24 -0.53 -0.43 16 10 N -0.45 -10.85 10.15 -9.17 -0.09 -10.95 16 11 C -0.03 -0.77 11.16 -17.36 -0.19 -0.96 16 12 C -0.15 -3.30 10.03 -39.84 -0.40 -3.70 16 13 C -0.13 -3.19 8.73 -38.98 -0.34 -3.53 16 14 C 0.09 2.26 5.55 -106.41 -0.59 1.67 16 15 C -0.44 -10.84 6.77 -37.89 -0.26 -11.09 16 16 H 0.09 2.22 6.42 -52.48 -0.34 1.89 16 17 C 0.07 1.76 5.21 -17.32 -0.09 1.67 16 18 N -0.78 -18.92 10.97 55.55 0.61 -18.31 16 19 Si 0.91 17.93 29.58 -169.99 -5.03 12.90 16 20 H -0.26 -5.15 7.11 56.52 0.40 -4.74 16 21 H -0.28 -5.27 7.11 56.52 0.40 -4.87 16 22 H -0.26 -5.11 7.11 56.52 0.40 -4.71 16 23 C -0.19 -3.70 9.50 -38.95 -0.37 -4.07 16 24 H 0.05 0.49 7.94 -51.93 -0.41 0.08 16 25 H 0.05 0.49 7.94 -51.93 -0.41 0.08 16 26 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 27 H 0.40 4.58 8.84 -40.82 -0.36 4.22 16 28 H 0.12 1.83 6.71 -52.49 -0.35 1.48 16 29 H 0.14 3.32 6.76 -52.48 -0.35 2.97 16 30 H 0.12 2.35 8.06 -52.48 -0.42 1.93 16 31 H 0.10 1.91 8.06 -52.49 -0.42 1.49 16 32 H 0.13 3.14 6.34 -52.49 -0.33 2.81 16 33 H 0.29 6.31 8.29 -40.82 -0.34 5.97 16 34 H 0.12 2.31 8.06 -52.49 -0.42 1.89 16 LS Contribution 296.32 15.07 4.47 4.47 Total: -1.00 -27.20 296.32 -8.02 -35.22 By element: Atomic # 1 Polarization: 13.93 SS G_CDS: -3.39 Total: 10.54 kcal Atomic # 6 Polarization: -16.46 SS G_CDS: -4.24 Total: -20.70 kcal Atomic # 7 Polarization: -39.73 SS G_CDS: 0.13 Total: -39.60 kcal Atomic # 9 Polarization: -2.87 SS G_CDS: 0.04 Total: -2.83 kcal Atomic # 14 Polarization: 17.93 SS G_CDS: -5.03 Total: 12.90 kcal Total LS contribution 4.47 Total: 4.47 kcal Total: -27.20 -8.02 -35.22 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001244828256.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.898 kcal (2) G-P(sol) polarization free energy of solvation -27.200 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.698 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.020 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.220 kcal (6) G-S(sol) free energy of system = (1) + (5) 2.678 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds