Wall clock time and date at job start Mon Mar 30 2020 01:33:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46497 * 1 3 3 C 1.39693 * 120.00360 * 2 1 4 4 C 1.39034 * 119.98226 * 359.97438 * 3 2 1 5 5 C 1.38464 * 120.20989 * 180.02562 * 4 3 2 6 6 F 1.35093 * 119.91393 * 179.97438 * 5 4 3 7 7 C 1.38236 * 120.17050 * 359.70196 * 5 4 3 8 8 C 1.39656 * 119.97102 * 0.57225 * 7 5 4 9 9 C 1.47826 * 120.10050 * 179.72196 * 8 7 5 10 10 N 1.32577 * 119.98813 * 136.04202 * 9 8 7 11 11 C 1.31743 * 121.71851 * 179.70453 * 10 9 8 12 12 C 1.38867 * 121.51111 * 0.58793 * 11 10 9 13 13 C 1.36894 * 119.79121 * 359.44903 * 12 11 10 14 14 C 1.41120 * 118.39262 * 0.24842 * 13 12 11 15 15 C 1.40892 * 120.71310 * 180.02562 * 14 13 12 16 16 H 1.08003 * 119.99304 * 152.85946 * 15 14 13 17 17 C 1.40065 * 120.00354 * 332.86011 * 15 14 13 18 18 N 1.30770 * 120.00193 * 345.59084 * 17 15 14 19 19 Si 1.86804 * 119.99878 * 165.59212 * 17 15 14 20 20 H 1.48497 * 109.47076 * 60.00327 * 19 17 15 21 21 H 1.48504 * 109.46901 * 180.02562 * 19 17 15 22 22 H 1.48495 * 109.46956 * 299.99830 * 19 17 15 23 23 C 1.38596 * 119.98428 * 180.02562 * 3 2 1 24 24 H 1.08999 * 109.47103 * 300.00377 * 1 2 3 25 25 H 1.09001 * 109.47383 * 59.99817 * 1 2 3 26 26 H 1.08997 * 109.47342 * 180.02562 * 1 2 3 27 27 H 0.97004 * 119.99982 * 180.02562 * 2 1 3 28 28 H 1.08000 * 119.90198 * 0.02562 * 4 3 2 29 29 H 1.08004 * 120.00637 * 180.29983 * 7 5 4 30 30 H 1.08006 * 119.24636 * 180.28841 * 11 10 9 31 31 H 1.07996 * 120.10852 * 179.71713 * 12 11 10 32 32 H 1.07997 * 120.79759 * 180.27316 * 13 12 11 33 33 H 0.96992 * 120.00339 * 180.02562 * 18 17 15 34 34 H 1.08001 * 120.09644 * 359.97438 * 23 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1635 1.2097 0.0000 4 6 1.4681 2.4136 -0.0005 5 6 2.1557 3.6155 -0.0011 6 9 1.4739 4.7817 -0.0021 7 6 3.5380 3.6250 0.0051 8 6 4.2440 2.4200 -0.0001 9 6 5.7223 2.4269 0.0003 10 7 6.3885 1.5999 0.7938 11 6 7.7055 1.5732 0.8175 12 6 8.4630 2.4204 0.0195 13 6 7.8384 3.3000 -0.8233 14 6 6.4276 3.3188 -0.8480 15 6 5.7345 4.2040 -1.6972 16 1 4.7456 3.9506 -2.0500 17 6 6.3278 5.4124 -2.0838 18 7 7.3834 5.8545 -1.4510 19 14 5.6112 6.3926 -3.5034 20 1 4.2088 6.7660 -3.1890 21 1 6.4166 7.6227 -3.7120 22 1 5.6391 5.5681 -4.7381 23 6 3.5495 1.2093 -0.0005 24 1 -0.3633 0.5139 0.8899 25 1 -0.3634 0.5139 -0.8900 26 1 -0.3634 -1.0276 0.0005 27 1 1.9500 -0.8401 -0.0004 28 1 0.3881 2.4115 -0.0005 29 1 4.0716 4.5640 0.0096 30 1 8.2075 0.8799 1.4762 31 1 9.5415 2.3825 0.0604 32 1 8.4116 3.9631 -1.4542 33 1 7.7940 6.6915 -1.7185 34 1 4.0907 0.2747 -0.0005 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001244828256.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:33:54 Heat of formation + Delta-G solvation = -12.310697 kcal Electronic energy + Delta-G solvation = -20028.293636 eV Core-core repulsion = 16839.022777 eV Total energy + Delta-G solvation = -3189.270859 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 272.102 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -49.79747 -40.72480 -39.56209 -36.36150 -35.97119 -32.99452 -32.47407 -30.91547 -29.91090 -27.67611 -26.56166 -24.45957 -23.46822 -22.88911 -21.57058 -19.32371 -18.86970 -17.62787 -17.28703 -16.96990 -16.60072 -16.50699 -16.23745 -16.00810 -15.53267 -15.32843 -14.98487 -14.40643 -14.34940 -13.84275 -13.59409 -13.31046 -13.19917 -13.01035 -12.86841 -12.77703 -12.52710 -12.40275 -12.14125 -11.63548 -11.21894 -10.91592 -10.22030 -9.96008 -9.86486 -9.16537 -8.72220 -8.33172 -6.42755 0.12510 0.54768 0.88424 1.17584 1.36179 1.46338 1.51331 2.15448 2.54537 2.69136 2.86127 3.41038 3.74199 3.79969 4.19201 4.27665 4.43575 4.48579 4.54926 4.61424 4.67259 4.73894 4.82735 4.98111 5.03001 5.07058 5.17896 5.25904 5.26548 5.43319 5.73519 5.78926 5.94370 5.98693 6.02902 6.42690 6.48864 6.70775 6.77788 6.86818 7.68483 8.19268 Molecular weight = 272.10amu Principal moments of inertia in cm(-1) A = 0.015198 B = 0.007374 C = 0.005390 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1841.907632 B = 3796.232591 C = 5193.341813 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.088 3.912 2 N -0.745 5.745 3 C 0.241 3.759 4 C -0.242 4.242 5 C 0.126 3.874 6 F -0.148 7.148 7 C -0.201 4.201 8 C 0.072 3.928 9 C -0.010 4.010 10 N -0.462 5.462 11 C -0.039 4.039 12 C -0.145 4.145 13 C -0.152 4.152 14 C 0.059 3.941 15 C -0.456 4.456 16 H 0.083 0.917 17 C 0.040 3.960 18 N -0.811 5.811 19 Si 0.973 3.027 20 H -0.262 1.262 21 H -0.262 1.262 22 H -0.257 1.257 23 C -0.195 4.195 24 H 0.053 0.947 25 H 0.053 0.947 26 H 0.101 0.899 27 H 0.410 0.590 28 H 0.152 0.848 29 H 0.115 0.885 30 H 0.155 0.845 31 H 0.132 0.868 32 H 0.117 0.883 33 H 0.294 0.706 34 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.146 -6.388 -0.501 11.167 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.056 4.056 2 N -0.375 5.375 3 C 0.136 3.864 4 C -0.265 4.265 5 C 0.106 3.894 6 F -0.127 7.127 7 C -0.223 4.223 8 C 0.070 3.930 9 C -0.148 4.148 10 N -0.170 5.170 11 C -0.200 4.200 12 C -0.165 4.165 13 C -0.178 4.178 14 C 0.055 3.945 15 C -0.484 4.484 16 H 0.101 0.899 17 C -0.177 4.177 18 N -0.436 5.436 19 Si 0.793 3.207 20 H -0.186 1.186 21 H -0.186 1.186 22 H -0.181 1.181 23 C -0.218 4.218 24 H 0.072 0.928 25 H 0.071 0.929 26 H 0.120 0.880 27 H 0.245 0.755 28 H 0.170 0.830 29 H 0.133 0.867 30 H 0.172 0.828 31 H 0.150 0.850 32 H 0.135 0.865 33 H 0.105 0.895 34 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges -9.690 -6.688 0.058 11.774 hybrid contribution 0.867 1.269 -0.972 1.819 sum -8.823 -5.419 -0.914 10.394 Atomic orbital electron populations 1.21736 0.78419 1.04151 1.01252 1.44472 1.06717 1.04192 1.82158 1.17268 0.89931 0.86969 0.92184 1.20496 1.00768 0.89244 1.16018 1.17289 0.89073 0.81252 1.01757 1.91422 1.79958 1.47211 1.94095 1.20977 0.92148 0.99229 1.09935 1.17920 0.90356 0.92002 0.92724 1.19763 0.92176 1.02238 1.00584 1.67075 1.10462 1.20227 1.19222 1.22273 0.89112 1.03777 1.04861 1.21759 1.00698 0.96588 0.97468 1.21471 0.94609 1.00137 1.01580 1.18668 0.93063 0.91690 0.91115 1.19721 1.02943 1.01578 1.24202 0.89870 1.26736 0.94317 0.98418 0.98235 1.69771 1.18428 1.19958 1.35433 0.85367 0.79421 0.77703 0.78204 1.18634 1.18617 1.18113 1.20714 0.92184 0.97553 1.11375 0.92810 0.92861 0.88049 0.75498 0.83003 0.86735 0.82770 0.85019 0.86478 0.89492 0.85849 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 1.39 9.94 127.77 1.27 2.66 16 2 N -0.75 -17.07 5.89 -360.97 -2.13 -19.19 16 3 C 0.24 7.75 6.64 38.16 0.25 8.00 16 4 C -0.24 -7.92 9.29 22.51 0.21 -7.71 16 5 C 0.13 4.93 7.29 22.32 0.16 5.10 16 6 F -0.15 -5.67 17.26 44.97 0.78 -4.89 16 7 C -0.20 -9.12 7.79 22.61 0.18 -8.94 16 8 C 0.07 3.31 5.25 -20.07 -0.11 3.20 16 9 C -0.01 -0.52 6.42 42.47 0.27 -0.25 16 10 N -0.46 -22.64 10.15 -182.92 -1.86 -24.50 16 11 C -0.04 -1.74 11.16 84.86 0.95 -0.80 16 12 C -0.15 -6.49 10.03 22.10 0.22 -6.27 16 13 C -0.15 -7.73 8.73 22.66 0.20 -7.53 16 14 C 0.06 3.16 5.55 -21.03 -0.12 3.04 16 15 C -0.46 -23.72 6.77 23.36 0.16 -23.57 16 16 H 0.08 4.31 6.42 -2.91 -0.02 4.29 16 17 C 0.04 1.95 5.21 85.29 0.44 2.40 16 18 N -0.81 -40.40 10.97 21.85 0.24 -40.16 16 19 Si 0.97 37.39 29.58 68.60 2.03 39.42 16 20 H -0.26 -10.11 7.11 99.48 0.71 -9.40 16 21 H -0.26 -9.40 7.11 99.48 0.71 -8.69 16 22 H -0.26 -9.64 7.11 99.48 0.71 -8.93 16 23 C -0.19 -7.57 9.50 22.68 0.22 -7.35 16 24 H 0.05 0.84 7.94 -2.39 -0.02 0.82 16 25 H 0.05 0.84 7.94 -2.39 -0.02 0.82 16 26 H 0.10 0.98 8.14 -2.39 -0.02 0.96 16 27 H 0.41 8.01 8.84 -92.71 -0.82 7.19 16 28 H 0.15 4.01 6.71 -2.91 -0.02 3.99 16 29 H 0.11 5.73 6.76 -2.91 -0.02 5.71 16 30 H 0.16 5.68 8.06 -2.91 -0.02 5.66 16 31 H 0.13 4.89 8.06 -2.91 -0.02 4.87 16 32 H 0.12 6.06 6.34 -2.91 -0.02 6.04 16 33 H 0.29 13.21 8.29 -92.71 -0.77 12.44 16 34 H 0.12 4.65 8.06 -2.91 -0.02 4.63 16 Total: -1.00 -60.64 296.32 3.70 -56.94 By element: Atomic # 1 Polarization: 30.08 SS G_CDS: 0.33 Total: 30.41 kcal Atomic # 6 Polarization: -42.32 SS G_CDS: 4.31 Total: -38.02 kcal Atomic # 7 Polarization: -80.11 SS G_CDS: -3.74 Total: -83.85 kcal Atomic # 9 Polarization: -5.67 SS G_CDS: 0.78 Total: -4.89 kcal Atomic # 14 Polarization: 37.39 SS G_CDS: 2.03 Total: 39.42 kcal Total: -60.64 3.70 -56.94 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001244828256.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.627 kcal (2) G-P(sol) polarization free energy of solvation -60.637 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.009 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.699 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.938 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.311 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds