Wall clock time and date at job start Mon Mar 30 2020 01:33:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 C 1.39684 * 119.99605 * 2 1 4 4 C 1.38963 * 120.00469 * 0.02562 * 3 2 1 5 5 C 1.38379 * 120.14976 * 179.97438 * 4 3 2 6 6 F 1.35098 * 119.92968 * 180.02562 * 5 4 3 7 7 C 1.38331 * 120.14271 * 359.97438 * 5 4 3 8 8 C 1.39304 * 120.00387 * 0.02595 * 7 5 4 9 9 C 1.48430 * 120.07375 * 179.97438 * 8 7 5 10 10 C 1.39706 * 120.40904 * 180.02562 * 9 8 7 11 11 N 1.31911 * 121.14743 * 179.97438 * 10 9 8 12 12 C 1.31526 * 122.12118 * 359.97438 * 11 10 9 13 13 C 1.40763 * 120.66422 * 0.02562 * 12 11 10 14 14 C 1.41445 * 120.60597 * 180.02562 * 13 12 11 15 15 H 1.07998 * 119.99465 * 23.41055 * 14 13 12 16 16 C 1.39931 * 119.99975 * 203.41419 * 14 13 12 17 17 N 1.30821 * 120.00257 * 17.50496 * 16 14 13 18 18 Si 1.86799 * 119.99567 * 197.50680 * 16 14 13 19 19 H 1.48503 * 109.47527 * 90.00014 * 18 16 14 20 20 H 1.48503 * 109.47008 * 209.99815 * 18 16 14 21 21 H 1.48501 * 109.47258 * 329.99658 * 18 16 14 22 22 C 1.39127 * 120.40856 * 359.97438 * 9 8 7 23 23 C 1.38709 * 120.00170 * 180.29681 * 3 2 1 24 24 H 1.09010 * 109.46623 * 179.97438 * 1 2 3 25 25 H 1.08994 * 109.47478 * 299.99567 * 1 2 3 26 26 H 1.08994 * 109.47097 * 60.00275 * 1 2 3 27 27 H 0.96996 * 120.00681 * 180.02562 * 2 1 3 28 28 H 1.08000 * 119.92725 * 0.02562 * 4 3 2 29 29 H 1.07998 * 119.99646 * 179.97438 * 7 5 4 30 30 H 1.07996 * 119.42228 * 359.97438 * 10 9 8 31 31 H 1.08000 * 119.66232 * 180.02562 * 12 11 10 32 32 H 0.97006 * 120.00242 * 179.97438 * 17 16 14 33 33 H 1.08006 * 120.95313 * 359.75081 * 22 9 8 34 34 H 1.07992 * 120.07361 * 0.02562 * 23 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1633 1.2097 0.0000 4 6 1.4685 2.4132 0.0005 5 6 2.1573 3.6134 0.0011 6 9 1.4773 4.7808 0.0021 7 6 3.5406 3.6204 0.0016 8 6 4.2433 2.4176 0.0011 9 6 5.7276 2.4234 0.0011 10 6 6.4394 1.2213 0.0000 11 7 7.7585 1.2094 -0.0005 12 6 8.4678 2.3169 -0.0006 13 6 7.8354 3.5745 0.0005 14 6 8.5995 4.7648 -0.0001 15 1 9.6130 4.7556 -0.3729 16 6 8.0421 5.9542 0.4825 17 7 6.9735 5.9173 1.2362 18 14 8.8240 7.5947 0.0502 19 1 8.2238 8.1138 -1.2050 20 1 8.5843 8.5625 1.1507 21 1 10.2856 7.4120 -0.1386 22 6 6.4272 3.6260 0.0011 23 6 3.5504 1.2099 -0.0062 24 1 -0.3633 -1.0278 -0.0005 25 1 -0.3634 0.5137 0.8900 26 1 -0.3633 0.5138 -0.8900 27 1 1.9501 -0.8400 -0.0004 28 1 0.3885 2.4119 0.0014 29 1 4.0758 4.5585 0.0016 30 1 5.9003 0.2855 -0.0004 31 1 9.5464 2.2609 -0.0014 32 1 6.5874 6.7418 1.5710 33 1 5.9059 4.5719 -0.0029 34 1 4.0916 0.2754 -0.0115 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001244829384.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:33:58 Heat of formation + Delta-G solvation = 0.730635 kcal Electronic energy + Delta-G solvation = -19614.849533 eV Core-core repulsion = 16426.144188 eV Total energy + Delta-G solvation = -3188.705345 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 272.102 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -48.52207 -39.31778 -38.07699 -35.36712 -34.15034 -31.84030 -30.54289 -29.68050 -28.16727 -26.07945 -25.49188 -22.77958 -22.55160 -21.06863 -20.08301 -17.84358 -17.09850 -16.38926 -16.11345 -15.41138 -15.24430 -15.10620 -15.09838 -14.45141 -14.20922 -14.09331 -13.71440 -12.93886 -12.65501 -12.50836 -12.20963 -11.95696 -11.90955 -11.73819 -11.39024 -11.29272 -11.01745 -10.75627 -10.57591 -10.05509 -9.91524 -9.43751 -8.92295 -8.19199 -7.95345 -7.45433 -7.22611 -6.90640 -4.56047 1.34038 1.76961 2.64973 2.93893 3.00833 3.03665 3.14678 3.44191 3.81353 4.15059 4.58145 4.67649 5.00621 5.11799 5.34292 5.39579 5.49820 5.57803 5.59918 5.77314 5.83510 5.97388 6.24446 6.34155 6.50429 6.54236 6.66284 6.75212 6.95860 7.02333 7.07824 7.22521 7.46690 7.61096 7.72152 7.77414 7.85364 8.33424 8.59727 8.62166 9.53802 9.99413 Molecular weight = 272.10amu Principal moments of inertia in cm(-1) A = 0.020911 B = 0.005317 C = 0.004294 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1338.681381 B = 5264.953883 C = 6518.977478 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.095 3.905 2 N -0.754 5.754 3 C 0.235 3.765 4 C -0.249 4.249 5 C 0.141 3.859 6 F -0.145 7.145 7 C -0.200 4.200 8 C 0.065 3.935 9 C -0.099 4.099 10 C -0.019 4.019 11 N -0.471 5.471 12 C -0.015 4.015 13 C 0.060 3.940 14 C -0.449 4.449 15 H 0.085 0.915 16 C 0.074 3.926 17 N -0.788 5.788 18 Si 0.913 3.087 19 H -0.266 1.266 20 H -0.276 1.276 21 H -0.260 1.260 22 C -0.110 4.110 23 C -0.202 4.202 24 H 0.070 0.930 25 H 0.050 0.950 26 H 0.050 0.950 27 H 0.402 0.598 28 H 0.125 0.875 29 H 0.138 0.862 30 H 0.123 0.877 31 H 0.128 0.872 32 H 0.285 0.715 33 H 0.135 0.865 34 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.659 -4.822 -1.653 11.815 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.050 4.050 2 N -0.384 5.384 3 C 0.133 3.867 4 C -0.273 4.273 5 C 0.121 3.879 6 F -0.124 7.124 7 C -0.220 4.220 8 C 0.063 3.937 9 C -0.101 4.101 10 C -0.177 4.177 11 N -0.177 5.177 12 C -0.176 4.176 13 C 0.055 3.945 14 C -0.478 4.478 15 H 0.103 0.897 16 C -0.145 4.145 17 N -0.412 5.412 18 Si 0.737 3.263 19 H -0.191 1.191 20 H -0.201 1.201 21 H -0.184 1.184 22 C -0.135 4.135 23 C -0.225 4.225 24 H 0.089 0.911 25 H 0.069 0.931 26 H 0.069 0.931 27 H 0.236 0.764 28 H 0.143 0.857 29 H 0.156 0.844 30 H 0.140 0.860 31 H 0.145 0.855 32 H 0.096 0.904 33 H 0.152 0.848 34 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges -10.639 -5.390 -1.502 12.020 hybrid contribution -0.217 1.551 -0.021 1.567 sum -10.855 -3.838 -1.524 11.614 Atomic orbital electron populations 1.21489 0.80534 1.01992 1.01014 1.44338 1.05431 1.05228 1.83451 1.17296 0.90664 0.85573 0.93174 1.20304 0.99714 0.90248 1.16991 1.17244 0.89704 0.80503 1.00446 1.91453 1.80269 1.46749 1.93891 1.21114 0.91578 1.00048 1.09290 1.18450 0.92717 0.91145 0.91370 1.19395 0.90292 0.95650 1.04792 1.21769 0.89798 0.95163 1.11009 1.66954 1.07780 1.32495 1.10513 1.22558 0.98189 0.87799 1.09051 1.18480 0.92432 0.93733 0.89830 1.19586 1.00515 0.92030 1.35676 0.89689 1.25980 0.94497 1.01675 0.92322 1.69772 1.18547 1.30707 1.22190 0.86221 0.80650 0.80246 0.79198 1.19064 1.20124 1.18384 1.21899 0.94209 0.96374 1.01014 1.20682 0.91292 0.98628 1.11877 0.91088 0.93124 0.93145 0.76415 0.85660 0.84416 0.85977 0.85490 0.90354 0.84789 0.85397 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 0.80 9.94 59.85 0.59 1.39 16 2 N -0.75 -8.41 5.89 -65.43 -0.39 -8.80 16 3 C 0.24 3.50 6.65 -83.84 -0.56 2.94 16 4 C -0.25 -3.84 9.28 -39.26 -0.36 -4.20 16 5 C 0.14 2.48 7.29 -39.50 -0.29 2.19 16 6 F -0.14 -2.52 17.26 2.25 0.04 -2.49 16 7 C -0.20 -3.91 9.41 -39.15 -0.37 -4.28 16 8 C 0.06 1.29 5.87 -104.93 -0.62 0.68 16 9 C -0.10 -2.27 5.88 -104.82 -0.62 -2.88 16 10 C -0.02 -0.44 10.60 -16.97 -0.18 -0.62 16 11 N -0.47 -11.44 10.32 -12.29 -0.13 -11.57 16 12 C -0.02 -0.38 10.96 -16.73 -0.18 -0.56 16 13 C 0.06 1.54 5.59 -106.71 -0.60 0.94 16 14 C -0.45 -11.28 9.08 -37.73 -0.34 -11.62 16 15 H 0.09 2.03 7.90 -52.49 -0.41 1.61 16 16 C 0.07 1.77 5.18 -17.35 -0.09 1.68 16 17 N -0.79 -19.40 10.91 55.55 0.61 -18.79 16 18 Si 0.91 17.83 29.59 -169.99 -5.03 12.80 16 19 H -0.27 -5.16 7.11 56.52 0.40 -4.76 16 20 H -0.28 -5.31 7.11 56.52 0.40 -4.91 16 21 H -0.26 -5.00 7.11 56.52 0.40 -4.60 16 22 C -0.11 -2.75 8.16 -38.24 -0.31 -3.06 16 23 C -0.20 -3.40 9.28 -39.03 -0.36 -3.77 16 24 H 0.07 0.42 8.14 -51.92 -0.42 0.00 16 25 H 0.05 0.43 7.94 -51.93 -0.41 0.02 16 26 H 0.05 0.42 7.95 -51.93 -0.41 0.01 16 27 H 0.40 3.76 8.84 -40.82 -0.36 3.40 16 28 H 0.13 1.65 6.71 -52.49 -0.35 1.30 16 29 H 0.14 2.84 6.25 -52.49 -0.33 2.51 16 30 H 0.12 2.40 6.20 -52.49 -0.33 2.07 16 31 H 0.13 2.89 8.06 -52.49 -0.42 2.47 16 32 H 0.29 6.41 8.30 -40.82 -0.34 6.07 16 33 H 0.13 3.39 4.44 -52.48 -0.23 3.16 16 34 H 0.13 1.96 6.21 -52.49 -0.33 1.63 16 LS Contribution 295.42 15.07 4.45 4.45 Total: -1.00 -27.71 295.42 -7.87 -35.58 By element: Atomic # 1 Polarization: 13.13 SS G_CDS: -3.15 Total: 9.98 kcal Atomic # 6 Polarization: -16.88 SS G_CDS: -4.28 Total: -21.17 kcal Atomic # 7 Polarization: -39.25 SS G_CDS: 0.09 Total: -39.16 kcal Atomic # 9 Polarization: -2.52 SS G_CDS: 0.04 Total: -2.49 kcal Atomic # 14 Polarization: 17.83 SS G_CDS: -5.03 Total: 12.80 kcal Total LS contribution 4.45 Total: 4.45 kcal Total: -27.71 -7.87 -35.58 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001244829384.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.309 kcal (2) G-P(sol) polarization free energy of solvation -27.705 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 8.604 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.874 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.579 kcal (6) G-S(sol) free energy of system = (1) + (5) 0.731 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds