Wall clock time and date at job start Mon Mar 30 2020 01:33:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 C 1.39684 * 119.99605 * 2 1 4 4 C 1.38963 * 120.00469 * 0.02562 * 3 2 1 5 5 C 1.38379 * 120.14976 * 179.97438 * 4 3 2 6 6 F 1.35098 * 119.92968 * 180.02562 * 5 4 3 7 7 C 1.38331 * 120.14271 * 359.97438 * 5 4 3 8 8 C 1.39304 * 120.00387 * 0.02595 * 7 5 4 9 9 C 1.48430 * 120.07375 * 179.97438 * 8 7 5 10 10 C 1.39706 * 120.40904 * 180.02562 * 9 8 7 11 11 N 1.31911 * 121.14743 * 179.97438 * 10 9 8 12 12 C 1.31526 * 122.12118 * 359.97438 * 11 10 9 13 13 C 1.40763 * 120.66422 * 0.02562 * 12 11 10 14 14 C 1.41445 * 120.60597 * 180.02562 * 13 12 11 15 15 H 1.07998 * 119.99465 * 23.41055 * 14 13 12 16 16 C 1.39931 * 119.99975 * 203.41419 * 14 13 12 17 17 N 1.30821 * 120.00257 * 17.50496 * 16 14 13 18 18 Si 1.86799 * 119.99567 * 197.50680 * 16 14 13 19 19 H 1.48503 * 109.47527 * 90.00014 * 18 16 14 20 20 H 1.48503 * 109.47008 * 209.99815 * 18 16 14 21 21 H 1.48501 * 109.47258 * 329.99658 * 18 16 14 22 22 C 1.39127 * 120.40856 * 359.97438 * 9 8 7 23 23 C 1.38709 * 120.00170 * 180.29681 * 3 2 1 24 24 H 1.09010 * 109.46623 * 179.97438 * 1 2 3 25 25 H 1.08994 * 109.47478 * 299.99567 * 1 2 3 26 26 H 1.08994 * 109.47097 * 60.00275 * 1 2 3 27 27 H 0.96996 * 120.00681 * 180.02562 * 2 1 3 28 28 H 1.08000 * 119.92725 * 0.02562 * 4 3 2 29 29 H 1.07998 * 119.99646 * 179.97438 * 7 5 4 30 30 H 1.07996 * 119.42228 * 359.97438 * 10 9 8 31 31 H 1.08000 * 119.66232 * 180.02562 * 12 11 10 32 32 H 0.97006 * 120.00242 * 179.97438 * 17 16 14 33 33 H 1.08006 * 120.95313 * 359.75081 * 22 9 8 34 34 H 1.07992 * 120.07361 * 0.02562 * 23 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1633 1.2097 0.0000 4 6 1.4685 2.4132 0.0005 5 6 2.1573 3.6134 0.0011 6 9 1.4773 4.7808 0.0021 7 6 3.5406 3.6204 0.0016 8 6 4.2433 2.4176 0.0011 9 6 5.7276 2.4234 0.0011 10 6 6.4394 1.2213 0.0000 11 7 7.7585 1.2094 -0.0005 12 6 8.4678 2.3169 -0.0006 13 6 7.8354 3.5745 0.0005 14 6 8.5995 4.7648 -0.0001 15 1 9.6130 4.7556 -0.3729 16 6 8.0421 5.9542 0.4825 17 7 6.9735 5.9173 1.2362 18 14 8.8240 7.5947 0.0502 19 1 8.2238 8.1138 -1.2050 20 1 8.5843 8.5625 1.1507 21 1 10.2856 7.4120 -0.1386 22 6 6.4272 3.6260 0.0011 23 6 3.5504 1.2099 -0.0062 24 1 -0.3633 -1.0278 -0.0005 25 1 -0.3634 0.5137 0.8900 26 1 -0.3633 0.5138 -0.8900 27 1 1.9501 -0.8400 -0.0004 28 1 0.3885 2.4119 0.0014 29 1 4.0758 4.5585 0.0016 30 1 5.9003 0.2855 -0.0004 31 1 9.5464 2.2609 -0.0014 32 1 6.5874 6.7418 1.5710 33 1 5.9059 4.5719 -0.0029 34 1 4.0916 0.2754 -0.0115 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001244829384.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:33:57 Heat of formation + Delta-G solvation = -14.744070 kcal Electronic energy + Delta-G solvation = -19615.520567 eV Core-core repulsion = 16426.144188 eV Total energy + Delta-G solvation = -3189.376378 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 272.102 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -49.90352 -40.81126 -39.67113 -36.54436 -35.98018 -33.37618 -32.36133 -30.95876 -29.68985 -27.63697 -26.76582 -24.29686 -24.14303 -22.66685 -21.60216 -19.41136 -18.60137 -17.90717 -17.57204 -17.02433 -16.68530 -16.61301 -16.37076 -15.86460 -15.64604 -15.20520 -15.05448 -14.51772 -14.39730 -13.91987 -13.62323 -13.49100 -13.25786 -13.11332 -12.95852 -12.84752 -12.45627 -12.31121 -12.13873 -11.68087 -11.33954 -11.22022 -10.38789 -10.06336 -9.81052 -9.04063 -8.70699 -8.42727 -6.47741 -0.16336 0.39498 0.90795 1.21495 1.38504 1.52215 1.52532 2.16928 2.47518 2.60667 2.88388 3.33468 3.70713 3.72245 4.00128 4.10979 4.28219 4.37815 4.42695 4.51918 4.62877 4.71861 4.78574 4.86141 4.96961 5.01426 5.13655 5.19571 5.22017 5.29503 5.48561 5.76554 5.85066 5.89417 6.01735 6.32962 6.45529 6.72984 6.74102 6.82761 7.65415 8.21370 Molecular weight = 272.10amu Principal moments of inertia in cm(-1) A = 0.020911 B = 0.005317 C = 0.004294 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1338.681381 B = 5264.953883 C = 6518.977478 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.085 3.915 2 N -0.741 5.741 3 C 0.248 3.752 4 C -0.237 4.237 5 C 0.135 3.865 6 F -0.147 7.147 7 C -0.222 4.222 8 C 0.039 3.961 9 C -0.095 4.095 10 C -0.024 4.024 11 N -0.479 5.479 12 C -0.036 4.036 13 C 0.035 3.965 14 C -0.480 4.480 15 H 0.089 0.911 16 C 0.036 3.964 17 N -0.817 5.817 18 Si 0.986 3.014 19 H -0.263 1.263 20 H -0.268 1.268 21 H -0.253 1.253 22 C -0.137 4.137 23 C -0.198 4.198 24 H 0.102 0.898 25 H 0.054 0.946 26 H 0.055 0.945 27 H 0.413 0.587 28 H 0.154 0.846 29 H 0.112 0.888 30 H 0.156 0.844 31 H 0.138 0.862 32 H 0.292 0.708 33 H 0.122 0.878 34 H 0.145 0.855 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.676 -6.040 -1.840 14.162 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.058 4.058 2 N -0.371 5.371 3 C 0.142 3.858 4 C -0.261 4.261 5 C 0.115 3.885 6 F -0.125 7.125 7 C -0.243 4.243 8 C 0.037 3.963 9 C -0.097 4.097 10 C -0.182 4.182 11 N -0.186 5.186 12 C -0.196 4.196 13 C 0.031 3.969 14 C -0.509 4.509 15 H 0.107 0.893 16 C -0.180 4.180 17 N -0.442 5.442 18 Si 0.806 3.194 19 H -0.187 1.187 20 H -0.193 1.193 21 H -0.176 1.176 22 C -0.162 4.162 23 C -0.221 4.221 24 H 0.120 0.880 25 H 0.072 0.928 26 H 0.073 0.927 27 H 0.249 0.751 28 H 0.172 0.828 29 H 0.130 0.870 30 H 0.174 0.826 31 H 0.155 0.845 32 H 0.103 0.897 33 H 0.140 0.860 34 H 0.163 0.837 Dipole moment (debyes) X Y Z Total from point charges -12.674 -6.664 -1.687 14.418 hybrid contribution 0.186 1.771 0.051 1.781 sum -12.487 -4.894 -1.636 13.511 Atomic orbital electron populations 1.21770 0.78399 1.04323 1.01345 1.44507 1.06799 1.04275 1.81474 1.17301 0.90102 0.86931 0.91466 1.20565 1.01071 0.89327 1.15105 1.17297 0.89006 0.81349 1.00815 1.91444 1.80045 1.47088 1.93953 1.20957 0.92690 0.99145 1.11548 1.18343 0.91168 0.92591 0.94160 1.19686 0.92292 0.94957 1.02776 1.22312 0.89506 0.96412 1.09976 1.66986 1.08626 1.32242 1.10739 1.22734 0.98865 0.87814 1.10166 1.18809 0.93124 0.94564 0.90387 1.19871 1.01037 0.92971 1.36992 0.89315 1.26840 0.94802 1.04880 0.91503 1.69833 1.19675 1.31988 1.22735 0.85130 0.79849 0.75446 0.78957 1.18734 1.19252 1.17646 1.21925 0.94293 0.96993 1.03036 1.20790 0.92345 0.97896 1.11027 0.87985 0.92776 0.92686 0.75085 0.82808 0.86996 0.82645 0.84498 0.89709 0.85991 0.83726 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 1.03 9.94 127.77 1.27 2.30 16 2 N -0.74 -13.29 5.89 -360.94 -2.13 -15.41 16 3 C 0.25 6.57 6.65 38.18 0.25 6.82 16 4 C -0.24 -6.66 9.28 22.48 0.21 -6.45 16 5 C 0.14 4.67 7.29 22.33 0.16 4.84 16 6 F -0.15 -5.05 17.26 44.97 0.78 -4.27 16 7 C -0.22 -8.97 9.41 22.55 0.21 -8.76 16 8 C 0.04 1.57 5.87 -20.06 -0.12 1.45 16 9 C -0.09 -4.46 5.88 -19.99 -0.12 -4.58 16 10 C -0.02 -1.08 10.60 85.04 0.90 -0.18 16 11 N -0.48 -23.52 10.32 -192.78 -1.99 -25.51 16 12 C -0.04 -1.83 10.96 85.36 0.94 -0.89 16 13 C 0.04 1.91 5.59 -21.22 -0.12 1.79 16 14 C -0.48 -25.10 9.08 23.47 0.21 -24.89 16 15 H 0.09 4.39 7.90 -2.91 -0.02 4.37 16 16 C 0.04 1.77 5.18 85.25 0.44 2.21 16 17 N -0.82 -41.88 10.91 21.82 0.24 -41.64 16 18 Si 0.99 37.07 29.59 68.60 2.03 39.10 16 19 H -0.26 -9.68 7.11 99.48 0.71 -8.97 16 20 H -0.27 -9.63 7.11 99.48 0.71 -8.93 16 21 H -0.25 -9.15 7.11 99.48 0.71 -8.44 16 22 C -0.14 -7.21 8.16 23.14 0.19 -7.02 16 23 C -0.20 -6.27 9.28 22.62 0.21 -6.06 16 24 H 0.10 0.66 8.14 -2.38 -0.02 0.64 16 25 H 0.05 0.67 7.94 -2.39 -0.02 0.65 16 26 H 0.05 0.67 7.95 -2.39 -0.02 0.65 16 27 H 0.41 5.83 8.84 -92.71 -0.82 5.01 16 28 H 0.15 3.42 6.71 -2.91 -0.02 3.40 16 29 H 0.11 5.00 6.25 -2.91 -0.02 4.98 16 30 H 0.16 5.81 6.20 -2.91 -0.02 5.79 16 31 H 0.14 6.47 8.06 -2.91 -0.02 6.45 16 32 H 0.29 13.57 8.30 -92.70 -0.77 12.80 16 33 H 0.12 6.62 4.44 -2.91 -0.01 6.61 16 34 H 0.15 3.99 6.21 -2.91 -0.02 3.97 16 Total: -1.00 -62.09 295.42 3.91 -58.17 By element: Atomic # 1 Polarization: 28.64 SS G_CDS: 0.34 Total: 28.98 kcal Atomic # 6 Polarization: -44.05 SS G_CDS: 4.64 Total: -39.41 kcal Atomic # 7 Polarization: -78.69 SS G_CDS: -3.88 Total: -82.56 kcal Atomic # 9 Polarization: -5.05 SS G_CDS: 0.78 Total: -4.27 kcal Atomic # 14 Polarization: 37.07 SS G_CDS: 2.03 Total: 39.10 kcal Total: -62.09 3.91 -58.17 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001244829384.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.428 kcal (2) G-P(sol) polarization free energy of solvation -62.086 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.658 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.914 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.172 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.744 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds