Wall clock time and date at job start Mon Mar 30 2020 01:34:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 C 1.39681 * 119.99847 * 2 1 4 4 C 1.39056 * 119.98460 * 359.97438 * 3 2 1 5 5 C 1.38475 * 120.20489 * 180.02562 * 4 3 2 6 6 F 1.35099 * 119.90860 * 180.02562 * 5 4 3 7 7 C 1.38219 * 120.17944 * 359.97438 * 5 4 3 8 8 C 1.39673 * 119.96985 * 0.02562 * 7 5 4 9 9 C 1.47828 * 120.10557 * 180.02562 * 8 7 5 10 10 C 1.39677 * 120.65233 * 130.25044 * 9 8 7 11 11 C 1.38388 * 118.47444 * 180.26285 * 10 9 8 12 12 C 1.39058 * 119.72659 * 359.75270 * 11 10 9 13 13 N 1.31277 * 121.33895 * 359.97171 * 12 11 10 14 14 C 1.33701 * 121.63354 * 0.02562 * 13 12 11 15 15 C 1.40821 * 119.93564 * 179.97438 * 14 13 12 16 16 H 1.08001 * 119.99805 * 187.43482 * 15 14 13 17 17 C 1.40149 * 120.00504 * 7.44037 * 15 14 13 18 18 N 1.30696 * 120.00199 * 196.32449 * 17 15 14 19 19 Si 1.86805 * 119.99791 * 16.31739 * 17 15 14 20 20 H 1.48492 * 109.47127 * 270.00634 * 19 17 15 21 21 H 1.48503 * 109.46786 * 30.00755 * 19 17 15 22 22 H 1.48500 * 109.47135 * 150.00329 * 19 17 15 23 23 C 1.38596 * 119.98316 * 180.30222 * 3 2 1 24 24 H 1.09000 * 109.47277 * 60.00361 * 1 2 3 25 25 H 1.09000 * 109.47317 * 180.02562 * 1 2 3 26 26 H 1.09002 * 109.47176 * 300.00492 * 1 2 3 27 27 H 0.96995 * 119.99672 * 179.97438 * 2 1 3 28 28 H 1.07995 * 119.89831 * 0.05009 * 4 3 2 29 29 H 1.07999 * 120.01508 * 180.02562 * 7 5 4 30 30 H 1.08002 * 120.76065 * 0.02562 * 10 9 8 31 31 H 1.08000 * 120.14245 * 179.72450 * 11 10 9 32 32 H 1.08006 * 119.33592 * 180.02562 * 12 11 10 33 33 H 0.97000 * 119.99929 * 355.73212 * 18 17 15 34 34 H 1.07999 * 120.09310 * 359.97438 * 23 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1634 1.2097 0.0000 4 6 1.4677 2.4137 -0.0005 5 6 2.1555 3.6156 -0.0011 6 9 1.4736 4.7819 -0.0011 7 6 3.5376 3.6253 -0.0005 8 6 4.2438 2.4203 0.0000 9 6 5.7221 2.4271 0.0011 10 6 6.4371 1.6540 0.9188 11 6 7.8198 1.6987 0.8833 12 6 8.4600 2.4984 -0.0570 13 7 7.7790 3.2172 -0.9190 14 6 6.4420 3.2146 -0.9329 15 6 5.7475 4.0000 -1.8731 16 1 4.6734 4.0937 -1.8102 17 6 6.4500 4.6598 -2.8906 18 7 5.8778 5.6262 -3.5591 19 14 8.2044 4.1583 -3.2911 20 1 9.1475 4.9537 -2.4647 21 1 8.3855 2.7139 -2.9972 22 1 8.4745 4.4084 -4.7297 23 6 3.5493 1.2093 -0.0063 24 1 -0.3634 0.5138 -0.8900 25 1 -0.3634 -1.0276 0.0005 26 1 -0.3633 0.5139 0.8899 27 1 1.9499 -0.8400 0.0004 28 1 0.3878 2.4115 -0.0001 29 1 4.0713 4.5642 -0.0005 30 1 5.9226 1.0386 1.6419 31 1 8.3993 1.1152 1.5833 32 1 9.5394 2.5282 -0.0794 33 1 4.9475 5.8455 -3.3939 34 1 4.0906 0.2748 -0.0109 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001244830416.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:34:00 Heat of formation + Delta-G solvation = -4.644468 kcal Electronic energy + Delta-G solvation = -20055.788818 eV Core-core repulsion = 16866.850391 eV Total energy + Delta-G solvation = -3188.938427 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 272.102 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -48.40771 -39.30364 -38.20516 -35.27373 -33.92368 -31.92712 -30.92183 -29.65599 -28.43359 -26.06323 -25.25838 -23.13340 -21.80024 -21.25516 -20.10502 -18.45041 -17.56944 -16.28624 -15.67592 -15.65534 -15.18757 -15.04461 -14.91952 -14.40182 -14.13459 -13.99995 -13.82742 -12.81894 -12.77691 -12.40725 -12.30321 -12.09592 -11.96738 -11.86924 -11.37038 -11.13329 -10.83750 -10.52789 -10.06791 -10.04477 -9.50450 -9.16833 -8.80240 -8.34226 -7.92532 -7.63399 -7.35777 -7.14646 -4.82914 1.58067 1.90671 2.53429 2.65294 3.51288 3.52666 3.60469 3.90708 4.20962 4.33275 4.52450 4.81704 5.06081 5.25099 5.39608 5.45523 5.53629 5.59791 5.65218 5.73159 5.86141 5.92962 6.06810 6.22666 6.38477 6.47530 6.60044 6.68239 6.91420 7.05377 7.13126 7.28647 7.36960 7.45600 7.58684 7.64168 7.81316 8.04000 8.21753 8.55729 9.41627 9.87443 Molecular weight = 272.10amu Principal moments of inertia in cm(-1) A = 0.018413 B = 0.006577 C = 0.005490 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1520.272323 B = 4256.402866 C = 5098.864457 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.096 3.904 2 N -0.755 5.755 3 C 0.234 3.766 4 C -0.255 4.255 5 C 0.137 3.863 6 F -0.147 7.147 7 C -0.193 4.193 8 C 0.094 3.906 9 C -0.231 4.231 10 C -0.015 4.015 11 C -0.322 4.322 12 C 0.159 3.841 13 N -0.567 5.567 14 C 0.259 3.741 15 C -0.464 4.464 16 H 0.099 0.901 17 C 0.047 3.953 18 N -0.787 5.787 19 Si 1.142 2.858 20 H -0.284 1.284 21 H -0.279 1.279 22 H -0.326 1.326 23 C -0.208 4.208 24 H 0.050 0.950 25 H 0.069 0.931 26 H 0.049 0.951 27 H 0.400 0.600 28 H 0.123 0.877 29 H 0.135 0.865 30 H 0.104 0.896 31 H 0.104 0.896 32 H 0.128 0.872 33 H 0.287 0.713 34 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.575 -8.778 5.805 12.409 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.049 4.049 2 N -0.386 5.386 3 C 0.132 3.868 4 C -0.278 4.278 5 C 0.117 3.883 6 F -0.126 7.126 7 C -0.214 4.214 8 C 0.092 3.908 9 C -0.235 4.235 10 C -0.039 4.039 11 C -0.345 4.345 12 C -0.006 4.006 13 N -0.283 5.283 14 C 0.138 3.862 15 C -0.493 4.493 16 H 0.117 0.883 17 C -0.177 4.177 18 N -0.407 5.407 19 Si 0.975 3.025 20 H -0.211 1.211 21 H -0.206 1.206 22 H -0.259 1.259 23 C -0.231 4.231 24 H 0.068 0.932 25 H 0.088 0.912 26 H 0.068 0.932 27 H 0.234 0.766 28 H 0.141 0.859 29 H 0.152 0.848 30 H 0.122 0.878 31 H 0.122 0.878 32 H 0.145 0.855 33 H 0.099 0.901 34 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges -5.313 -7.696 4.212 10.256 hybrid contribution -1.962 -0.962 1.683 2.758 sum -7.275 -8.658 5.895 12.753 Atomic orbital electron populations 1.21469 0.80663 1.01827 1.00977 1.44315 1.05338 1.05218 1.83757 1.17277 0.90666 0.85465 0.93391 1.20269 0.99505 0.90238 1.17803 1.17277 0.89762 0.80465 1.00814 1.91442 1.80236 1.46942 1.93957 1.21154 0.91249 1.00049 1.08931 1.18133 0.92250 0.90651 0.89784 1.19106 0.90603 1.08445 1.05377 1.20981 0.93808 0.94135 0.95009 1.21070 0.94486 1.11425 1.07525 1.22240 0.98519 0.90244 0.89606 1.66822 1.08291 1.26833 1.26404 1.18442 0.87234 0.89122 0.91404 1.21092 0.97302 1.22527 1.08409 0.88313 1.27846 1.08674 0.90024 0.91191 1.70595 1.14841 1.19077 1.36217 0.82139 0.71024 0.77748 0.71628 1.21064 1.20608 1.25879 1.20710 0.91194 0.98245 1.12930 0.93175 0.91213 0.93239 0.76608 0.85911 0.84756 0.87833 0.87776 0.85473 0.90138 0.86201 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 0.90 9.94 59.85 0.59 1.50 16 2 N -0.76 -9.22 5.89 -65.44 -0.39 -9.60 16 3 C 0.23 3.76 6.64 -83.85 -0.56 3.21 16 4 C -0.25 -4.29 9.29 -39.19 -0.36 -4.65 16 5 C 0.14 2.61 7.29 -39.50 -0.29 2.32 16 6 F -0.15 -2.79 17.26 2.25 0.04 -2.75 16 7 C -0.19 -4.06 7.52 -39.05 -0.29 -4.35 16 8 C 0.09 1.95 5.07 -104.93 -0.53 1.42 16 9 C -0.23 -5.24 5.53 -104.07 -0.58 -5.82 16 10 C -0.02 -0.31 9.66 -38.99 -0.38 -0.69 16 11 C -0.32 -6.34 10.10 -39.22 -0.40 -6.74 16 12 C 0.16 3.38 11.17 -17.48 -0.20 3.19 16 13 N -0.57 -14.00 4.98 -10.91 -0.05 -14.05 16 14 C 0.26 6.56 6.30 -84.71 -0.53 6.03 16 15 C -0.46 -12.24 8.47 -37.89 -0.32 -12.56 16 16 H 0.10 2.62 5.18 -52.49 -0.27 2.35 16 17 C 0.05 1.24 5.52 -17.32 -0.10 1.14 16 18 N -0.79 -21.00 13.65 55.56 0.76 -20.24 16 19 Si 1.14 27.33 25.94 -169.99 -4.41 22.92 16 20 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 21 H -0.28 -6.70 6.52 56.52 0.37 -6.33 16 22 H -0.33 -7.67 7.11 56.52 0.40 -7.27 16 23 C -0.21 -3.73 9.39 -38.94 -0.37 -4.10 16 24 H 0.05 0.49 7.94 -51.93 -0.41 0.08 16 25 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 26 H 0.05 0.46 7.94 -51.93 -0.41 0.05 16 27 H 0.40 4.12 8.84 -40.82 -0.36 3.76 16 28 H 0.12 1.80 6.71 -52.49 -0.35 1.44 16 29 H 0.13 3.02 7.15 -52.49 -0.38 2.64 16 30 H 0.10 1.81 8.06 -52.49 -0.42 1.39 16 31 H 0.10 1.74 8.06 -52.49 -0.42 1.31 16 32 H 0.13 2.27 8.06 -52.48 -0.42 1.85 16 33 H 0.29 7.40 8.72 -40.82 -0.36 7.05 16 34 H 0.12 1.97 8.05 -52.49 -0.42 1.54 16 LS Contribution 293.19 15.07 4.42 4.42 Total: -1.00 -28.42 293.19 -7.42 -35.84 By element: Atomic # 1 Polarization: 7.06 SS G_CDS: -3.48 Total: 3.57 kcal Atomic # 6 Polarization: -15.80 SS G_CDS: -4.30 Total: -20.10 kcal Atomic # 7 Polarization: -44.22 SS G_CDS: 0.32 Total: -43.90 kcal Atomic # 9 Polarization: -2.79 SS G_CDS: 0.04 Total: -2.75 kcal Atomic # 14 Polarization: 27.33 SS G_CDS: -4.41 Total: 22.92 kcal Total LS contribution 4.42 Total: 4.42 kcal Total: -28.42 -7.42 -35.84 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001244830416.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.194 kcal (2) G-P(sol) polarization free energy of solvation -28.422 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 2.772 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.417 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.838 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.644 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds