Wall clock time and date at job start Mon Mar 30 2020 01:02:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50708 * 1 3 3 C 1.38868 * 119.24291 * 2 1 4 4 C 1.36887 * 119.79472 * 179.97438 * 3 2 1 5 5 C 1.41128 * 118.39635 * 359.73881 * 4 3 2 6 6 C 1.40882 * 120.71997 * 180.28226 * 5 4 3 7 7 H 1.08007 * 119.99680 * 155.84399 * 6 5 4 8 8 C 1.40073 * 120.00268 * 335.84605 * 6 5 4 9 9 N 1.30777 * 119.99762 * 344.23877 * 8 6 5 10 10 Si 1.86794 * 120.00194 * 164.24336 * 8 6 5 11 11 H 1.48508 * 109.47088 * 59.99647 * 10 8 6 12 12 H 1.48508 * 109.47272 * 179.97438 * 10 8 6 13 13 H 1.48497 * 109.47451 * 299.99923 * 10 8 6 14 14 C 1.41861 * 118.55774 * 0.49727 * 5 4 3 15 15 C 1.47828 * 119.99176 * 179.75989 * 14 5 4 16 16 C 1.39681 * 120.55466 * 309.06300 * 15 14 5 17 17 N 1.31640 * 120.60519 * 179.97438 * 16 15 14 18 18 C 1.31943 * 121.91467 * 359.97438 * 17 16 15 19 19 C 1.38584 * 121.06117 * 0.25790 * 18 17 16 20 20 F 1.35098 * 120.36705 * 179.71888 * 19 18 17 21 21 C 1.38573 * 119.26375 * 359.49667 * 19 18 17 22 22 C 1.50695 * 120.86643 * 180.23890 * 21 19 18 23 23 N 1.31740 * 119.24665 * 179.97438 * 2 1 3 24 24 H 1.08998 * 109.46960 * 270.02081 * 1 2 3 25 25 H 1.09000 * 109.47341 * 30.02039 * 1 2 3 26 26 H 1.08996 * 109.46903 * 150.02180 * 1 2 3 27 27 H 1.07995 * 120.10312 * 0.02692 * 3 2 1 28 28 H 1.08001 * 120.80377 * 179.97438 * 4 3 2 29 29 H 0.97000 * 119.99665 * 180.02562 * 9 8 6 30 30 H 1.07996 * 119.69551 * 359.94724 * 16 15 14 31 31 H 1.08000 * 119.47117 * 179.97438 * 18 17 16 32 32 H 1.08999 * 109.47182 * 267.99365 * 22 21 19 33 33 H 1.08994 * 109.47311 * 27.99814 * 22 21 19 34 34 H 1.09008 * 109.46488 * 147.99600 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1855 1.2117 0.0000 4 6 3.5543 1.2249 0.0005 5 6 4.2373 -0.0101 0.0067 6 6 5.6455 -0.0536 0.0135 7 1 6.1570 -0.9224 0.4008 8 6 6.3821 1.0299 -0.4820 9 7 5.7964 1.9349 -1.2223 10 14 8.2011 1.1821 -0.0853 11 1 8.9220 -0.0087 -0.6030 12 1 8.7464 2.4068 -0.7242 13 1 8.3814 1.2687 1.3862 14 6 3.4753 -1.2066 0.0013 15 6 4.1582 -2.5177 0.0022 16 6 5.1628 -2.7957 -0.9278 17 7 5.7719 -3.9626 -0.9276 18 6 5.4658 -4.9091 -0.0607 19 6 4.4776 -4.7145 0.8912 20 9 4.1716 -5.6953 1.7684 21 6 3.8100 -3.5010 0.9362 22 6 2.7331 -3.2486 1.9596 23 7 2.1507 -1.1495 0.0005 24 1 -0.3633 0.0004 1.0277 25 1 -0.3634 0.8898 -0.5141 26 1 -0.3633 -0.8902 -0.5135 27 1 1.6348 2.1407 0.0004 28 1 4.0984 2.1578 0.0001 29 1 6.3066 2.6849 -1.5657 30 1 5.4419 -2.0465 -1.6538 31 1 5.9907 -5.8523 -0.0965 32 1 1.7635 -3.5184 1.5409 33 1 2.9263 -3.8517 2.8467 34 1 2.7305 -2.1930 2.2314 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001244833079.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:02:17 Heat of formation + Delta-G solvation = -1.494740 kcal Electronic energy + Delta-G solvation = -20366.439367 eV Core-core repulsion = 17177.637522 eV Total energy + Delta-G solvation = -3188.801844 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 272.102 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -48.54914 -39.70385 -38.30617 -34.52418 -33.68424 -31.84700 -30.86499 -29.56919 -27.99866 -27.26082 -24.74901 -23.17827 -21.87307 -20.86497 -20.50646 -17.56654 -16.92197 -16.70109 -15.78160 -15.71604 -15.39618 -14.77766 -14.37394 -13.95418 -13.53726 -13.21378 -13.02692 -12.71517 -12.43770 -12.36429 -12.14634 -11.98632 -11.87285 -11.60001 -11.57723 -11.23090 -11.11720 -11.03741 -10.68669 -10.07419 -9.53923 -9.15973 -8.93871 -8.54266 -8.22677 -8.18743 -7.56349 -7.05706 -4.68046 1.41042 1.62027 2.47262 2.81246 2.91752 2.95196 3.06163 3.70518 4.20813 4.35782 4.54208 4.94278 5.14637 5.23545 5.34617 5.35589 5.65934 5.94367 5.95548 6.08995 6.12037 6.26332 6.32981 6.35140 6.38754 6.43741 6.49509 6.66811 6.79854 6.83841 6.95902 7.03234 7.23320 7.52235 7.64797 7.76057 8.19707 8.40592 8.42352 8.49960 9.42299 9.80223 Molecular weight = 272.10amu Principal moments of inertia in cm(-1) A = 0.013081 B = 0.008971 C = 0.005780 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2139.940776 B = 3120.418579 C = 4842.732438 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 C -0.009 4.009 3 C -0.138 4.138 4 C -0.128 4.128 5 C 0.087 3.913 6 C -0.435 4.435 7 H 0.086 0.914 8 C 0.076 3.924 9 N -0.777 5.777 10 Si 0.911 3.089 11 H -0.258 1.258 12 H -0.275 1.275 13 H -0.261 1.261 14 C 0.004 3.996 15 C 0.008 3.992 16 C 0.112 3.888 17 N -0.468 5.468 18 C 0.047 3.953 19 C 0.034 3.966 20 F -0.140 7.140 21 C -0.075 4.075 22 C -0.097 4.097 23 N -0.439 5.439 24 H 0.050 0.950 25 H 0.052 0.948 26 H 0.055 0.945 27 H 0.100 0.900 28 H 0.131 0.869 29 H 0.288 0.712 30 H 0.168 0.832 31 H 0.155 0.845 32 H 0.077 0.923 33 H 0.057 0.943 34 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.447 -3.264 2.536 4.379 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.152 4.152 3 C -0.158 4.158 4 C -0.154 4.154 5 C 0.082 3.918 6 C -0.464 4.464 7 H 0.104 0.896 8 C -0.145 4.145 9 N -0.400 5.400 10 Si 0.734 3.266 11 H -0.183 1.183 12 H -0.199 1.199 13 H -0.185 1.185 14 C -0.134 4.134 15 C 0.005 3.995 16 C -0.046 4.046 17 N -0.176 5.176 18 C -0.110 4.110 19 C 0.012 3.988 20 F -0.119 7.119 21 C -0.084 4.084 22 C -0.153 4.153 23 N -0.148 5.148 24 H 0.069 0.931 25 H 0.071 0.929 26 H 0.074 0.926 27 H 0.118 0.882 28 H 0.149 0.851 29 H 0.100 0.900 30 H 0.185 0.815 31 H 0.172 0.828 32 H 0.096 0.904 33 H 0.076 0.924 34 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -1.222 -4.007 1.803 4.561 hybrid contribution 0.637 1.054 0.855 1.499 sum -0.585 -2.953 2.657 4.016 Atomic orbital electron populations 1.20283 0.91434 1.00983 1.00455 1.20243 0.94849 0.88438 1.11695 1.21281 0.95416 0.97216 1.01924 1.21474 0.92646 0.98865 1.02388 1.18271 0.93924 0.90767 0.88800 1.19605 0.91007 1.02015 1.33731 0.89590 1.26034 1.01871 0.94254 0.92329 1.69737 1.39207 1.09660 1.21413 0.86277 0.80943 0.79102 0.80272 1.18257 1.19938 1.18501 1.18999 0.88496 0.90170 1.15766 1.19255 0.94710 0.92392 0.93099 1.23139 0.91777 0.92851 0.96866 1.67651 1.26217 1.01343 1.22360 1.22639 0.96260 0.99530 0.92617 1.18565 1.00350 0.86801 0.93059 1.91428 1.92545 1.60574 1.67386 1.20540 0.98009 0.91910 0.97908 1.20548 0.96280 1.03004 0.95483 1.66833 1.09277 1.29324 1.09332 0.93147 0.92866 0.92591 0.88196 0.85121 0.90035 0.81462 0.82766 0.90431 0.92442 0.90556 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -1.25 10.15 36.01 0.37 -0.88 16 2 C -0.01 -0.20 6.79 -82.39 -0.56 -0.76 16 3 C -0.14 -2.97 9.64 -39.84 -0.38 -3.35 16 4 C -0.13 -3.02 8.75 -38.98 -0.34 -3.36 16 5 C 0.09 2.11 5.59 -106.42 -0.59 1.52 16 6 C -0.44 -10.31 7.28 -37.89 -0.28 -10.58 16 7 H 0.09 2.03 6.56 -52.48 -0.34 1.68 16 8 C 0.08 1.71 5.21 -17.31 -0.09 1.62 16 9 N -0.78 -17.84 10.85 55.55 0.60 -17.24 16 10 Si 0.91 17.20 29.59 -169.99 -5.03 12.17 16 11 H -0.26 -4.93 7.11 56.52 0.40 -4.53 16 12 H -0.27 -5.03 7.11 56.52 0.40 -4.63 16 13 H -0.26 -4.95 7.11 56.52 0.40 -4.55 16 14 C 0.00 0.08 5.47 -82.24 -0.45 -0.37 16 15 C 0.01 0.18 5.03 -104.77 -0.53 -0.35 16 16 C 0.11 2.33 9.17 -17.10 -0.16 2.18 16 17 N -0.47 -9.09 10.34 -12.82 -0.13 -9.22 16 18 C 0.05 0.82 11.16 -17.38 -0.19 0.62 16 19 C 0.03 0.61 7.28 -39.33 -0.29 0.32 16 20 F -0.14 -2.36 16.57 2.25 0.04 -2.32 16 21 C -0.07 -1.47 5.95 -103.83 -0.62 -2.09 16 22 C -0.10 -1.73 8.87 36.00 0.32 -1.41 16 23 N -0.44 -9.98 8.95 -5.44 -0.05 -10.03 16 24 H 0.05 0.78 8.14 -51.93 -0.42 0.36 16 25 H 0.05 0.79 8.07 -51.93 -0.42 0.37 16 26 H 0.06 0.93 8.14 -51.93 -0.42 0.50 16 27 H 0.10 1.87 8.06 -52.49 -0.42 1.45 16 28 H 0.13 3.12 6.16 -52.49 -0.32 2.80 16 29 H 0.29 6.03 8.29 -40.82 -0.34 5.69 16 30 H 0.17 3.54 7.39 -52.49 -0.39 3.16 16 31 H 0.16 2.16 8.06 -52.49 -0.42 1.73 16 32 H 0.08 1.35 8.14 -51.93 -0.42 0.93 16 33 H 0.06 0.91 7.67 -51.93 -0.40 0.51 16 34 H 0.08 1.48 7.00 -51.92 -0.36 1.11 16 LS Contribution 295.66 15.07 4.46 4.46 Total: -1.00 -25.08 295.66 -7.39 -32.48 By element: Atomic # 1 Polarization: 10.08 SS G_CDS: -3.48 Total: 6.59 kcal Atomic # 6 Polarization: -13.09 SS G_CDS: -3.79 Total: -16.89 kcal Atomic # 7 Polarization: -36.91 SS G_CDS: 0.42 Total: -36.49 kcal Atomic # 9 Polarization: -2.36 SS G_CDS: 0.04 Total: -2.32 kcal Atomic # 14 Polarization: 17.20 SS G_CDS: -5.03 Total: 12.17 kcal Total LS contribution 4.46 Total: 4.46 kcal Total: -25.08 -7.39 -32.48 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001244833079.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.982 kcal (2) G-P(sol) polarization free energy of solvation -25.084 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.898 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.393 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -32.477 kcal (6) G-S(sol) free energy of system = (1) + (5) -1.495 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds